2024-05-04 23:00:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_006254827 4269 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus thioredoxin-like 1 (Txnl1), transcript variant X1, mRNA. ACCESSION XM_006254827 VERSION XM_006254827.4 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051353.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 21, 2021 this sequence version replaced XM_006254827.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4269 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="18" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..4269 /gene="Txnl1" /gene_synonym="Txnl" /note="thioredoxin-like 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 77 ESTs, 11 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns" /db_xref="GeneID:140922" /db_xref="RGD:621717" CDS 236..1114 /gene="Txnl1" /gene_synonym="Txnl" /codon_start=1 /product="thioredoxin-like protein 1 isoform X1" /protein_id="XP_006254889.1" /db_xref="GeneID:140922" /db_xref="RGD:621717" /translation="
MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIPKGYMDLMPFINKAGCECLNESDEHGFDNCLRKDLSFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTLFVQSNQGEEETTRISYFTFIGTPVQATNMNDFKRRIHIGKLRVVSL"
misc_feature 269..547 /gene="Txnl1" /gene_synonym="Txnl" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947" /db_xref="CDD:239245" misc_feature order(335..337,344..346) /gene="Txnl1" /gene_synonym="Txnl" /note="catalytic residues [active]" /db_xref="CDD:239245" misc_feature 611..1039 /gene="Txnl1" /gene_synonym="Txnl" /note="PITH domain; Region: PITH; pfam06201" /db_xref="CDD:428821" ORIGIN
gctgggtgttgcgcgccttgcccctctagctcccctcccagcccgcgtctcctccccctccgctcgcctgctccctggcgtgactcggcactcgcagcaccgggaggacacgtcgtggtcgccgttcccgcccaggccccggcctcctgcagcctctctccggcctctctcgggctttcgtcttaagttttgaggccggaggcgtcgtggccgtcctgccgggctctctgtaaggatggtgggagtgaagccggtcgggagcgatccagatttccagccggagctgagtggggcgggctccagacttgctgtggtcaagttcaccatgagagggtgtggaccatgtttgaggatcgccccggcattcagttctatgagtaataagtacccacaggcagtcttcttggaagtagatgtgcatcagtgccagggaacagctgccaccaacaatatatcagcaacacctacatttttgttttttcgaaacaaagtgagaattgatcagtatcaaggagcagatgctgtgggactggaagaaaaaatcaagcagcatttagaaaatgaccctggaagcaatgaggacacagacattcccaagggctatatggatttaatgccttttattaacaaagctggctgcgaatgtctcaatgaaagtgatgagcacggctttgacaactgcttacgaaaagacctgtccttcttggagtctgactgcgacgagcagctgcttattactgtggcattcaatcaaccagttaaactttattccatgaagtttcaaggaccagataatggtcagggtcctaaatatgtaaaaatttttatcaacctaccccgatctatggactttgaggaggcagaaaggagtgagccaacccaagctctggaactgacagaagatgacattaaagaagatggcattgttcctcttcgttatgttaaatttcagaatgtgaacagtgtaactttgtttgttcagtctaatcaaggagaagaagaaacaacaagaatttcctattttactttcattggtactcccgtccaggcaacaaatatgaatgacttcaaacgaagaatacatattggcaagttgagagttgtcagcctgtgaaacagtagttggcaaaaagggggaaagccattagggtacaaaagacactggaagactactgcagtcagatttgcagctcctggataattgcttgattctcttcggaaactgttaatcttttatttgttgccagtaccaataaatcattgcttttgttcagatggtaatactagtgtttctattgtaatcttgatacatgcagttgtaaataaaagtcattactttgccaagcttaaatttttgtcattctgtataaatgcattctctctctttttatttgaacataggctaagcttttgttttagaagagttgttgactaaaagctagtctgtctctaaaggagcggaatgttgcaggacttgggagcactgtctatacatgtggagtgttttgatatggacttgagacatccgtatatgtggaatgttttgatgcatggatttgggatggttaatcaagttcaagaccatactgacttattctatcaaaagatatttagggatctaggctttataaatttactcaattctaagcatctattactcctgtcactggcagttaacaggtttacaaatgttttgtttctaagttatcttcaccattgatatccttgtgtacctgccgcccagatggtgggattgtaagcatataccactctcgtgccaagattttaactctctgtataaacctaaaagttagagttagctattccctttaataaggcaggcattaatactaaattcagaaaatttggaaaaatataatacaacgaatttatcgaaatttagaagtggaatctaatctaatttattatcttaagttcaccaaaacattcactctaaatatatagatagataaagcttaaaatgagttgtctcaactgattgaaaggtctttcacaatagactggctaagacaaatatttgttcttacatgcttttttaacacttaatattggcaaatttaatgtttaaatactttattttttatgtgcatgtgtgttttgcctccgtgtgtgtattcatgtgggtgtggtgcctaacagaggccagaagagcctcagaaaccctggaaaaggggtgggagctgcttgggaactgccgtgtgggtggtaggaacaaaccccggcctctacaagactgctgctccagcccacaaggttgtcttgtacttgattactttaaaagcatatgtaagactataatttgtaattcagttacacatttgaggacattcttatctagaaatagtacagagattcgccctttggatactaatgtatttatacataattatgaaaaaactatcgtcgttgttgaagtagtgttgaagtactccttttctgaaacttgtgtccttacgtgatgttcagatcatttgtatgtgagtacagtaactggtctgtgttgcggctgtattttatgtatttcacagagtttgttgactcggaacaaatggaagacaacaaaataaaagtttatagtacctgtaaaccatcttgaagttaatcacacctgaaatggagaatacgattaacaagaaaagttgtagtttatacttatcctttttggggggaatcataaaagtgcctcatctcaggtgtaaatggtctcatcctattcgactacttgaaaaaccaagtaaaagtggtttcacatttgcaaaggatcagacatgagatttcctgttgttcatatgattcctgttacttttttgcaacttacagacattccatcattcaagttgtaaatagtgaagaatgctagtaggaaacttacatgtgtcacaaacaaatacgcataattgagatataaaaccaagctaaaatgctgttttctgttaagctagttaatataaatatatatttaaatataaataagtatatttacatgtaagtttttctcaaaagaacatgaggaatgtgtagccttagctcttttatcattagccatccattaatgttttctagaaaactaatatttattaccaaaaatctgcatgcatcgtttttcaagtcaggctgcctagttgagacatacaatgaaatgctctgtcagcagaaacaaagtattgccaaagtattgcttttcagagaaagcctaacaataagaccagcccttgttactccactcaagagttcccgttggtctttatactttgactatctgctgtcaagtaccaaataggaccctctcggcatacgaatgtattggatggagttagtcacctagccttctgccaaccgtgtttctttaaatgattaaagatgtgtaagattttttttgtactgttaatagtttttgctattagtgtatatttaataccagcatttgttttatggatgttgttagtatcagattgagagcattgacatcacaatgtcagcaacgagatacagtctgtacatgacaaagagttacatccttgtcagatcttaacgatatgaacaagacctgtacaatgacaccgtcagctgacttgccaaaatggatgtcgtacaaggccagatctctacatgaaaagctactaagaaccagtcttacccggggaaaggtctcttggtaagttatccaatcccaagtggccagccctaaatacaaacgagcaatcccaaatgtacttgcaggttatattcacgtacatgcatatgtggacatgtctgctattgctgtgaatacccctgaccaaggcgtgcttcagaagaactcattgaccctgactcagagggtgagtctgagcgttgtgttggggagcatggcaggaggcaagcgggcatggtactgggagggtagctgaattcctgcgtacagtctgatccagaactatgaggcaaggagagccaactgggaatggtgtgggcctttgaaatcacagcagaaaaaggagggattatgttacaattacatttaaaaatataaggtgactgatacgtagcttatttgaatcaataccaatacccttggtttctttttttattacaccaaagacaatttttgtctacaatttcttaagtgttgtttatatatgaaaatttcaatgtctcatttgtctactcacctcacttgattatcatgtttgagaaatattgatacaggagaaattggaatttactcctaaagtttttagtctcattaataaagtgcattttaatata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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