2024-04-30 00:25:01, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_006250372 5275 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus nuclear VCP-like (Nvl), transcript variant X6, mRNA. ACCESSION XM_006250372 VERSION XM_006250372.4 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051348.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 21, 2021 this sequence version replaced XM_006250372.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5275 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="13" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..5275 /gene="Nvl" /note="nuclear VCP-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 ESTs, 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns" /db_xref="GeneID:289323" /db_xref="RGD:1311270" CDS 304..2397 /gene="Nvl" /codon_start=1 /product="nuclear valosin-containing protein-like isoform X5" /protein_id="XP_006250434.1" /db_xref="GeneID:289323" /db_xref="RGD:1311270" /translation="
MPLKTPAREPEGGWFIDKTPGGQKESLPLDLSDDQSNCKKQDPGIQNLKDSSLLESDKKRKSRAKGKGNKRKTEGLQEADGEIEAILQKRAKAKSTELQISSVKFEDVGGNDATLKEVCKMLIHMRHPEVYQHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRDLFDQAVSNAPCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVVGATNRPDSLDPALRRAGRFDREVCLGIPDEASRERILQTLCRKLRLPETFNFSHLAHLTPGFVGADLMALCREAAVCAVHRVLMRRQEQQRTEPETGGLPSDGEQGRSLGAEPPSETQDELQRLLGLLRDQDPISEEQMQGLCLELNDFIVALSEVQPSAKREGFVTVPNVTWADVGALEDIREELTMAILAPVRNPEQFRALGLVAPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLETRQQVFILAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVDLEAIANDHRCDCYTGADLSALVREASLCALRQEITGQKNGIGTAELTVSHKHFEEAFRKVKPSISVKDQRMYEALQRSLSQ"
misc_feature <592..2394 /gene="Nvl" /note="AAA family ATPase, CDC48 subfamily; Region: CDC48; TIGR01243" /db_xref="CDD:273521" ORIGIN
ctgaagcaacgagtcattcagtacctcagtagtaatagatgtggcaaatatgtggacactggaatcttagcatccgacttgcaaagaatgtacagattatggtcgaagaaaaagaaatgcttttagaatccaggtggaaaaagtgtttaacataattagtagtgagaaagaacataagaatcttaaagaactagaagatggacatctggcaaaaagagcaagacaagatgaagatgatgagtacactgaaagctattctgatgatgattcaaacatggaagattacccagatccacagactccatgccattgaagacccctgcccgagaacctgagggaggatggtttattgacaaaaccccaggtggacagaaagaaagtcttcccttggacctgtcagatgaccaaagcaactgtaaaaagcaggatcctgggattcagaatttaaaagattcttctcttctggaaagtgacaagaaaaggaaaagtagggcaaaaggcaaaggaaacaaaagaaagacagagggtcttcaagaagcggatggagagatagaagctattctgcaaaagagagctaaagcgaagagtacagagttgcagatttccagtgtgaagtttgaagatgtcggaggcaatgatgcgacattaaaagaagtctgcaagatgctgattcacatgcgtcatccagaggtgtaccagcaccttggtgtcgtgccccctcgtggagttcttctgcatggaccaccaggctgtgggaagacattacttgcacatgcgatagcaggggagcttgacttgccgattctgaaagtggctgccccagagatcgtgtcgggagtgtctggagagtctgagcaaaagctcagggatttatttgaccaggccgtgtcaaacgcaccatgtattgtgttcattgatgaaattgatgcaatcacccccaaaagagaagttgcttcaaaagatatggaacgaaggatcgtggcccagcttctaacctgcatggacgatctgaataacgtggcagctacagcccgagtcctagttgttggagctactaaccggccagactcattggatcctgctctgagacgtgcgggaaggtttgatcgagaagtctgcttgggtatcccagatgaggcatccagagaaagaattctccaaactttgtgccgaaaactgagacttccagaaacctttaatttttctcatttagcacacctgacaccaggctttgttggtgctgacctgatggctctttgtcgagaggcagccgtgtgtgcggtgcacagggtcttgatgagacggcaggagcagcagaggacagagcctgagactgggggtttgccctctgacggagagcaggggagaagcctgggagcagagcccccttctgaaacacaggatgaattgcaaaggctgttggggttgctaagagaccaagatcccatctcagaggagcagatgcaaggactgtgccttgaattaaatgatttcattgttgctctatcagaagtccagccttctgccaaaagggaaggctttgtaactgtccctaatgtgacatgggctgatgtcggtgccctggaagatatcagagaggagctcaccatggcaatattggcacctgttcgaaacccagagcagttcagggctcttggtttggtggccccagctggtgtcctcctagccggacctcctgggtgtgggaaaacgctgctggcaaaggctgtggcaaatgagtctggactaaattttatatctgtcaaaggccctgaattattaaatatgtatgtcggggagagtgagcgcgctgtgcgacaggtttttcagcgagccaagaactcggcgccctgcgtgatattctttgatgaggtggatgccttatgcccccggagatcagaccgagaaacaggtgctagtgtccgtgtggtgaatcagctgctgacagaaatggatggtttagaaacacgccagcaagtttttattttggctgccactaatagaccagatatcattgaccctgctattctgcgccccggccggctggacaaaacactctttgtgggtttgccacccccagcagaccgtgttgccatattaaagactattacaaaaaatggcaccaaacctcccctggatgaagatgtagatttggaagcaattgctaatgaccatcgttgtgattgctatacgggtgcagacctttctgctttggtccgagaagcttctctctgtgccctgagacaagaaataacaggacagaagaatggcattggaacagctgagctgacggtcagtcataagcactttgaagaagctttcaggaaagtgaaaccatccatatcagtaaaggatcaaaggatgtacgaagctctacagaggtccctcagtcagtgacgtccacgcccagtgcgtgggactcaccacgaaccacactcacctgacgggtctgctttcaacttgacacaggtggtcttcttgtaagcatttcattttcaagttaatgaggccaaatcgaagaaaatggtgtttcctatctgaccagctttgtggaaaaactctctacctcctttttaagaaagagaaaaaaagaaatgataaaaccttattcaaataaaattttattttgaactatcttgatcacgcataaacagtttccttgagaattgatcaccttacatcccatcatctcagttacacattcatatcagaacatttttctgcattaccaaccatcagtacattgacacattgctacagtttcactccaatcagtcttactcagctcttctgatgtcatttatagtagagggatctggtctaagttacctattccagtgtgttaagtcttccttagagtttccacaagtttttgttgttgctggattttgcgttttgtttggggatagtttgtatgtacccctgtctggcctggaacttactgtatagagtaggctggcctcagactcccagagttctgtgtgcctctgcttcctgagtgctgcgattaaaggtgtgtgccccatatccagcttttctcccgttcttaggtcagtgattggattggcttaattttatctccttgaagatacatagtaaagccagtctcggcatcctctcaggcgctaatacagctctctggtccttcaaactgtccctgcagtcacttgattcacgtggtctaggaggctcctacactgcagtcactgcttttcctttttaattcactcctgtgttgggaagataatttcccttctcatacatgtgttccaccctcgccagatccaggggagagtgtttttcagtgttttattcatcgtcatgttggatgttcagattgtctcgaattgtgtctttagtgaatctctaagctaatgttttatgaggaagtttatgctgtgtcatggttatttcaaccagccattcaagcattgctgttgctgtacaaacaggtctgcttatttcattctcttcctaaatttttttttttttttggttctttttttcggagctggggaccgaacccagggccttgtgcttcctaggtaagcgctctaccactgagctaaatccccagccccctcttcctaaatttttattctatctctttctgcaaagtctttgaggttccttttaagaatttaagaatgatggagctgaagaaatggcttagtaattaagagtacatactgctctttcagaggaccaagtttgattcccagcacctacataggcagctcaaaactgcctgtactcctagctacaggaggtcctgcatttctggcttccacattacctgtgctcacatgtgtataacaccctccccccacacacacccccaacactttttagaaattaaacatttttataaaaccaatgaaattgataatgggttggtgaaatgattcagcaggtaaaaacacttgctaccaagcgttacaacctgatcttgatcctggggagtcacgtggtgggaagaactaactcctaaaagctgtactctgaccctgtggatctcagtcgagatctctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacgcaaacacacacattaaattggaaaaatacaactgaaataaaattagagttatggttgcaaaggtcaacatgacctttatcatggggacttggcagaggtttataggtacagaatgacactgttcaatgaagaacgtaaaggaaacaactggatcccagaatgagggcgattggagagttagaaataagtgccagaaaaacctttaatagtgagcctgagctgttgagcctgatgccacacttgctgtatgccaaatgaaaacgctgtctgccatgtcggatcttctcgacaactgaatgctgggtctaagtgcatgtattcctggtgacctggacataaaatgcaggttgtgtctgctgtggtacaagtggaacagaagtcagttactgagcagaaaatggattacaacatttcttcaaatagcaccttttgaacatactctgtggagtgcttgacactcgtgtgtcttatgtggtgttcccagctcagtaggctcttttcacatacacactttatagaaatgaagatggagagtttgctaatacaagaggagtggaggctggtggcttcataaattggcactcggaagtgctgttaacgtcttggttggggatgtttctttaccaattttttcatgactggctcacctgtgcccttttgtacaagaacccttgaggacctgttcttccaacttaaggataagaagcttacttaggggttggagaaagagcacagcagttaagagttcagttcccagcaaacatggtggctcacaaccatctgtcatggggtctggtgccctcttcctggtgtttgttgtacataaagacagctatagtgtgctcacgtacacaaataacatctttaaaaaaagtgcctgtgtgggagtgcccagaagtactgccctgatggggaaagatagcaccttagactcaatttcaggttgctctgctgtctgccagtgaacttacctgactatcttgtcagggtccttagccggccctaagccggcccgctgagtgtggcagcacattcagggttttctgtgactgacatccttatagctttcgcctttataaatgctgcatctgtgagctttgggtcaaaacttctttgtgacaagagcctgctctctatcttaaataaagactgcttgcttggcctta
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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