LOCUS       XM_006238072            2393 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DnaJ heat shock protein family (Hsp40)
            member B5 (Dnajb5), transcript variant X2, mRNA.
ACCESSION   XM_006238072
VERSION     XM_006238072.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006238072.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2393
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2393
                     /gene="Dnajb5"
                     /note="DnaJ heat shock protein family (Hsp40) member B5;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 50 ESTs, 10 long SRA reads, 20
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 220 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:313811"
                     /db_xref="RGD:1307453"
     CDS             167..1213
                     /gene="Dnajb5"
                     /codon_start=1
                     /product="dnaJ homolog subfamily B member 5 isoform X2"
                     /protein_id="XP_006238134.1"
                     /db_xref="GeneID:313811"
                     /db_xref="RGD:1307453"
                     /translation="

MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRSLYDQYGEEGLKTGGGTSGGSGGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPFSGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGCTVNIPTIDGRVIPLPCNDVIKPGTVKRLRGEGLPFPKVPTQRGDLIVEFKVRFPDRLTPQTRQILKQHLPCS"

     misc_feature    167..1195
                     /gene="Dnajb5"
                     /note="DnaJ-class molecular chaperone with C-terminal Zn
                     finger domain [Posttranslational modification, protein
                     turnover, chaperones]; Region: DnaJ; COG0484"
                     /db_xref="CDD:223560"
ORIGIN      

gggctcccggtcccgctgtctgcggccggcgggcaggcgactcctgtcccgagtggaggcggcggagccggagccgggggagggggcagcggctgatagaaggaccgcggcggcgcccgcagctcctcaccgaaacaaggagcccagcaccggtccagtggctgtgatgggaaaagattattacaagattcttggaatcccgtctggggccaacgaagatgagatcaagaaagcctatcgaaagatggccttgaagtaccacccagacaagaacaaagaacccaacgctgaggagaagtttaaggagattgccgaggcctacgacgtgctgagtgaccctaagaaacggagcctgtatgaccagtatggggaggaaggcctcaagaccggcggtggtacctcaggtggctccggtggctcctttcactacacctttcacggggaccctcatgccacctttgcttccttctttggtggctccaaccccttcgatatcttctttgccagcagccgctccactcggcctttcagtggctttgacccagatgacatggatgtggatgaagatgaggacccatttggtgcctttggccgctttggcttcaatgggctgagtaggggtccgaggcgagccccagaaccactgtacccccggcgcaaggtacaggacccccctgtggtgcatgagctgcgggtgtccctggaggagatctaccacggctccaccaagcgcatgaagatcacaaggcgacgccttaaccccgatgggcgaactgtgcgcaccgaggacaaaatcctgcacattgtcatcaaacgtggctggaaggagggcaccaagattaccttccccaaagagggcgatgccacacccgacaacatcccagccgacattgtcttcgtgctcaaagacaagcctcatgcgcactttcgccgagatggcaccaacgtgctctacagtgcactcatcagcctcaaggaggcgctgtgtggctgcaccgtgaacattcccaccattgatggccgagtgatccctttaccctgcaatgatgttattaaaccaggcaccgtgaagagactccgtggggagggacttcccttccccaaggtgcccactcagcggggagacctcattgttgagttcaaagttcgattcccagacagattaaccccacagacacggcagatccttaaacagcacctaccctgctcctaggctctccctagcctgtctggagcccaccacagcaatacccccacactcaccaatctcatgtggacccggctggatgtccaccggacactggcactttcctaaaatgcaagaagccactgattttcaggaaaatgttcctcttcccgacaacccctttcggagctgggctgctttgggggaatgggagggcggtggggagaactagcccagaccaggggtcaatttttttgtcacgtgctttgaatccagttcccactgcagtggctggagagtgacttgagagctactcggagctatagattccttgtcctgcctgtaaatagcatgtcctcccccttctcagccttgctaacacctttcctctcccttcccctcggcttcctcctgtttctggagaaagaagttagaaaggacaccgcttcccaccccacccccaggtctgtagtgtccgaggctattttgcacaagtgttcgtgcacatgaagcactcgccaaaatggtccgtgtctctctgagagacaagaaaggacaggaggtaggaaggtcccttaccgatgaacaaggctgtcatttgagcacgagacacttttcatttggggcagggaggtgagccaacccttaggagccttcccaacagctgccctgcctacaccccacagagttggaggatctgtccccctcagctgctctggggagtgttcaggggtggagagaagaaaggagggcctgaaccatccaccacagctaagaggtggggcaggacccatctcccagccatcaccaggaaggaaaagggctttgggatcaggtggcagctgttccccaccaagagattcaggatcacaggttccttcccatatctctgaactcagggcctagccaccccaaacttccaagccccacttttgcgatatgtgaagctacttatttcttacttttcttggaggctgtgtcggaaatttccagcctctctgcctgtgtgaccctcaccccaccccactcccacagttgtataaaagtcgaatagtgaaggagctgggagaaaactgcttcagttggtcctggggtggggtctttaggttttctcactttgacaagcccctgaatgtttttatagtagttttttgtatttttttgtaatgacagtattatgaaaaaaataaagtattttaaaaatatg

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