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2024-04-20 13:36:27, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Rattus norvegicus enolase 1 (Eno1), transcript variant 1, mRNA. (1754 bp)
ggtgccccctgccgatctgagcgcctggccaagtacaatcagatccttagaatcgaggaggagctgggcagcaaagccaagtttgccggcaggtccttcaggaaccccctggccaagtaaggcatggaccggagatccctggagctaccagatcctctgtctctgtcatccaggcggctcaaggctggcccagtgcttgcccctcccatgtcactgcttccttagatgtccaccccgaccacctggagccctgctggagcccccagctttgtaatcatgtgatcagtctgaatcattgtttctgtcacctgactttccagctagtgtctggagccctctgaactccagcgtaatctctagggtgcccacaccatcaagactccccccagtggtttacttgcaaaaataaaagctgcagaagcccaaaaaaaaaaaaaaaaaaaaaaaa
position 1595
Synonym: Nne
NM_012554.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus enolase 1 (Eno1), transcript variant 2, mRNA. (1803 bp)
ggtgccccctgccgatctgagcgcctggccaagtacaatcagatccttagaatcgaggaggagctgggcagcaaagccaagtttgccggcaggtccttcaggaaccccctggccaagtaaggcatggaccggagatccctggagctaccagatcctctgtctctgtcatccaggcggctcaaggctggcccagtgcttgcccctcccatgtcactgcttccttagatgtccaccccgaccacctggagccctgctggagcccccagctttgtaatcatgtgatcagtctgaatcattgtttctgtcacctgactttccagctagtgtctggagccctctgaactccagcgtaatctctagggtgcccacaccatcaagactccccccagtggtttacttgcaaaaataaaagctgcagaagcccaaaaaaaaaaaaaaaaaaaaaaaa
position 1644
Synonym: Nne
NM_001109908.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus enolase 1 (Eno1), transcript variant X1, mRNA. (1639 bp)
ggtgccccctgccgatctgagcgcctggccaagtacaatcagatccttagaatcgaggaggagctgggcagcaaagccaagtttgccggcaggtccttcaggaaccccctggccaagtaaggcatggaccggagatccctggagctaccagatcctctgtctctgtcatccaggcggctcaaggctggcccagtgcttgcccctcccatgtcactgcttccttagatgtccaccccgaccacctggagccctgctggagcccccagctttgtaatcatgtgatcagtctgaatcattgtttctgtcacctgactttccagctagtgtctggagccctctgaactccagcgtaatctctagggtgcccacaccatcaagactccccccagtggtttacttgcaaaaataaaagctgcagaagccca
position 1503
Synonym: Nne
XM_039109257.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus enolase 1, pseudogene 6 (Eno1-ps6), misc_RNA. (1665 bp)
gccccctgcagatctgagcgcctggccaagtacaatcagatccttagaatcgaggaggagctgggcagcaaagccaagtttgccggcaggtccttcaggaaacccctggccaagtaaggcatggaccggagatccctggagctaccagatcctctgtctctgatgtcatccaggcggctcaaggctggcccagtgcttgcccctcccatgtcactgcttctttagatgtccaccccgaccacctggagccctgctggagcccccagctttgtaatcatgtgatcggtctgaatcattgtttctgtcacctgactttccagctagtgtctggagccctctgaactccagcgtaatctctagggtgcccacaccatcaagactccccccagtggtttacttgcaaaaataaaagctgcagaagcccaaaaaaaaaaaaaaa
position 1515
XR_362392.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus enolase 1 (Eno1), transcript variant X2, mRNA. (1666 bp)
ggtgccccctgccgatctgagcgcctggccaagtacaatcagatccttagaatcgaggaggagctgggcagcaaagccaagtttgccggcaggtccttcaggaaccccctggccaagtaaggcatggaccggagatccctggagctaccagatcctctgtctctgtcatccaggcggctcaaggctggcccagtgcttgcccctcccatgtcactgcttccttagatgtccaccccgaccacctggagccctgctggagcccccagctttgtaatcatgtgatcagtctgaatcattgtttctgtcacctgactttccagctagtgtctggagccctctgaactccagcgtaatctctagggtgcccacaccatcaagactccccccagtggtttacttgcaaaaataaaagctgcagaagccca
position 1530
Synonym: Nne
XM_039109258.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus enolase 1, pseudogene 20 (Eno1-ps20), misc_RNA. (1742 bp)
gccccctgccgatctgagcgcctggccaagtacaatcagatccttagaatcgaggaggagctgggcagcaaagccaagtttgccggcaggtccttcaggaaccccctggccaagtaaggcatggaccggagatccctggagctaccagatcctctgtctctgatgtcatccaggcggctcaaggctggcccagtgcttgcccctcccatgtcactgcttccttagacgtccaccccgaccacctggagccctgctggagcccccagctttgtaatcatgtgatcggtctgaatcattgtttctgtcacctgactttccagctagtgtctggagccctctgaactccagcgtaatctctagggtgcccacaccatcaagactccccccagtggtttacttgcaaaaataaaagctgcagaagccca
position 1606
XR_353580.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus enolase 1 (Eno1), transcript variant X3, mRNA. (1777 bp)
ggtgccccctgccgatctgagcgcctggccaagtacaatcagatccttagaatcgaggaggagctgggcagcaaagccaagtttgccggcaggtccttcaggaaccccctggccaagtaaggcatggaccggagatccctggagctaccagatcctctgtctctgtcatccaggcggctcaaggctggcccagtgcttgcccctcccatgtcactgcttccttagatgtccaccccgaccacctggagccctgctggagcccccagctttgtaatcatgtgatcagtctgaatcattgtttctgtcacctgactttccagctagtgtctggagccctctgaactccagcgtaatctctagggtgcccacaccatcaagactccccccagtggtttacttgcaaaaataaaagctgcagaagccca
position 1641
Synonym: Nne
XM_006239444.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1) (LOC289134), transcript variant X2, ncRNA. (5717 bp)
ctctgcactgggcagatcaagactggtgtccaatctgagcacctggccaagtacaatcagatccttagagttgaggaagagctgggcaggtccttcaggaacccactgaccaagtaaggcatggactggagatccctggagctaccggatcctctgtccctgatgtcatccaggtagctcaaggctggcccagtgcttacccctcccatgtcactgcttccttagatgtccaccctgaccacctggagccctgctggagactccagctttgtaatcacgtgactggtctgaatcattgtttctgtcacctgacttcccagctagtgtctggagccctcaggactccagtaatctctagggtgcccataccgtcaagactcccccaatggtttacatgcaaaaatataagccacagaagcccagaaaaaaaatttttttagagttaggaaggtaaatgaactttaccagcactgtccaccattgcagataccattgtttacagtgttatttcagtcactgagttatcctgtggttgagatgctgctcaattaatgcatagagggagggagtgccctgcagccaaatcaccttccgaagggg...
position 1579
XR_005492565.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1) (LOC289134), transcript variant X1, ncRNA. (5999 bp)
ctctgcactgggcagatcaagactggtgtccaatctgagcacctggccaagtacaatcagatccttagagttgaggaagagctgggcaggtccttcaggaacccactgaccaagtaaggcatggactggagatccctggagctaccggatcctctgtccctgatgtcatccaggtagctcaaggctggcccagtgcttacccctcccatgtcactgcttccttagatgtccaccctgaccacctggagccctgctggagactccagctttgtaatcacgtgactggtctgaatcattgtttctgtcacctgacttcccagctagtgtctggagccctcaggactccagtaatctctagggtgcccataccgtcaagactcccccaatggtttacatgcaaaaatataagccacagaagcccagaaaaaaaatttttttagagttaggaaggtaaatgaactttaccagcactgtccaccattgcagataccattgtttacagtgttatttcagtcactgagttatcctgtggttgagatgctgctcaattaatgcatagagggagggagtgccctgcagccaaatcaccttccgaagggg...
position 1861
XR_005492564.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/rn/seq%3aTGAATCATTGTTTCTGTCACCTGAC
lang : en | div : | spe : rn | query_string : seq:TGAATCATTGTTTCTGTCACCTGAC | format : html | download : 

0.000 | 0.000 | search_start;
0.085 | 0.085 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:TGAATCATTGTTTCTGTCACCTGAC)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.104 | 0.020 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:TGAATCATTGTTTCTGTCACCTGAC)?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.106 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]