2024-04-30 00:26:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_058210 2762 bp mRNA linear ROD 17-APR-2022 DEFINITION Rattus norvegicus splicing factor 1 (Sf1), transcript variant 2, mRNA. ACCESSION NM_058210 XM_342001 VERSION NM_058210.2 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 2762) AUTHORS Zhou J. TITLE LncRNA MIAT promotes hypoxia-induced H9C2 cell pyroptosis via binding to SF1 to inhibit CGRP transcription JOURNAL Exp Physiol 107 (1), 58-67 (2022) PUBMED 34713933 REMARK GeneRIF: LncRNA MIAT promotes hypoxia-induced H9C2 cell pyroptosis via binding to SF1 to inhibit CGRP transcription. REFERENCE 2 (bases 1 to 2762) AUTHORS Crisci A, Raleff F, Bagdiul I, Raabe M, Urlaub H, Rain JC and Kramer A. TITLE Mammalian splicing factor SF1 interacts with SURP domains of U2 snRNP-associated proteins JOURNAL Nucleic Acids Res 43 (21), 10456-10473 (2015) PUBMED 26420826 REFERENCE 3 (bases 1 to 2762) AUTHORS Ishizuka A, Hasegawa Y, Ishida K, Yanaka K and Nakagawa S. TITLE Formation of nuclear bodies by the lncRNA Gomafu-associating proteins Celf3 and SF1 JOURNAL Genes Cells 19 (9), 704-721 (2014) PUBMED 25145264 REFERENCE 4 (bases 1 to 2762) AUTHORS Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y, Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E, Bonneau R, Selbach M, Dieterich C and Landthaler M. TITLE The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts JOURNAL Mol Cell 46 (5), 674-690 (2012) PUBMED 22681889 REFERENCE 5 (bases 1 to 2762) AUTHORS Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and Hentze MW. TITLE Insights into RNA biology from an atlas of mammalian mRNA-binding proteins JOURNAL Cell 149 (6), 1393-1406 (2012) PUBMED 22658674 REFERENCE 6 (bases 1 to 2762) AUTHORS Wahl MC, Will CL and Luhrmann R. TITLE The spliceosome: design principles of a dynamic RNP machine JOURNAL Cell 136 (4), 701-718 (2009) PUBMED 19239890 REMARK Review article REFERENCE 7 (bases 1 to 2762) AUTHORS Park SY, Tong M and Jameson JL. TITLE Distinct roles for steroidogenic factor 1 and desert hedgehog pathways in fetal and adult Leydig cell development JOURNAL Endocrinology 148 (8), 3704-3710 (2007) PUBMED 17495005 REFERENCE 8 (bases 1 to 2762) AUTHORS Cattaruzza M, Schafer K and Hecker M. TITLE Cytokine-induced down-regulation of zfm1/splicing factor-1 promotes smooth muscle cell proliferation JOURNAL J Biol Chem 277 (8), 6582-6589 (2002) PUBMED 11748220 REFERENCE 9 (bases 1 to 2762) AUTHORS Covini N, Tamburin M, Consalez G, Salvati P and Benatti L. TITLE ZFM1/SF1 mRNA in rat and gerbil brain after global ischaemia JOURNAL Eur J Neurosci 11 (3), 781-787 (1999) PUBMED 10103072 REFERENCE 10 (bases 1 to 2762) AUTHORS Neubauer G, King A, Rappsilber J, Calvio C, Watson M, Ajuh P, Sleeman J, Lamond A and Mann M. TITLE Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex JOURNAL Nat Genet 20 (1), 46-50 (1998) PUBMED 9731529 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BU671240.1 and BC081859.1. On Nov 20, 2007 this sequence version replaced NM_058210.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00132261, SAMD00132262 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-669 BU671240.1 1-669 670-2762 BC081859.1 583-2675 FEATURES Location/Qualifiers source 1..2762 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="1" /map="1q43" gene 1..2762 /gene="Sf1" /gene_synonym="Zfp162" /note="splicing factor 1" /db_xref="GeneID:117855" /db_xref="RGD:620645" exon 1..418 /gene="Sf1" /gene_synonym="Zfp162" /inference="alignment:Splign:2.1.0" misc_feature 139..141 /gene="Sf1" /gene_synonym="Zfp162" /note="upstream in-frame stop codon" CDS 388..2034 /gene="Sf1" /gene_synonym="Zfp162" /note="isoform 2 is encoded by transcript variant 2; zinc finger protein 162" /codon_start=1 /product="splicing factor 1 isoform 2" /protein_id="NP_478117.2" /db_xref="GeneID:117855" /db_xref="RGD:620645" /translation="
MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNRILRPWQSSETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAPRPAAPASNPPPPSLMSTTQSRPPWMNSGPSENRPYHGMHGGGPGGPGGGPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQRSLPAAAMARAMRVRTFRAHW"
misc_feature 436..1158 /gene="Sf1" /gene_synonym="Zfp162" /note="Splicing factor (branch point binding protein) [RNA processing and modification]; Region: MSL5; COG5176" /db_xref="CDD:227503" misc_feature 1219..1266 /gene="Sf1" /gene_synonym="Zfp162" /note="zinc finger; Region: ZnF_C2HC; smart00343" /db_xref="CDD:197667" exon 419..547 /gene="Sf1" /gene_synonym="Zfp162" /inference="alignment:Splign:2.1.0" exon 548..623 /gene="Sf1" /gene_synonym="Zfp162" /inference="alignment:Splign:2.1.0" exon 624..776 /gene="Sf1" /gene_synonym="Zfp162" /inference="alignment:Splign:2.1.0" exon 777..866 /gene="Sf1" /gene_synonym="Zfp162" /inference="alignment:Splign:2.1.0" exon 867..1050 /gene="Sf1" /gene_synonym="Zfp162" /inference="alignment:Splign:2.1.0" exon 1051..1166 /gene="Sf1" /gene_synonym="Zfp162" /inference="alignment:Splign:2.1.0" exon 1167..1274 /gene="Sf1" /gene_synonym="Zfp162" /inference="alignment:Splign:2.1.0" exon 1275..1455 /gene="Sf1" /gene_synonym="Zfp162" /inference="alignment:Splign:2.1.0" exon 1456..1729 /gene="Sf1" /gene_synonym="Zfp162" /inference="alignment:Splign:2.1.0" exon 1730..1789 /gene="Sf1" /gene_synonym="Zfp162" /inference="alignment:Splign:2.1.0" exon 1790..1969 /gene="Sf1" /gene_synonym="Zfp162" /inference="alignment:Splign:2.1.0" exon 1970..2738 /gene="Sf1" /gene_synonym="Zfp162" /inference="alignment:Splign:2.1.0" ORIGIN
ccgcgcagtaacaagaagtgcgcgctgcgacacctcccagttcactcggccccgccgccatttcgtcgcctggcctaacggttcggccaatcccgacgcgtattgaaaagaactagtgctccgccaatcggaggccgctgactccgacctcacctcgggccggcccaatccaggccgcggccccgccgcccccaacccgcccccgcggcgtcctctctcctccctctttgtgcgtctggcgccgccgccgcccgccgcgtgagaggacgggctccccgcgctcttcgggagcgtagtcgggtcccctccccccaacccgcgaaggttcgtgaaggagaagccgccgcggaggacgaggaaccgctggtgccggtcccctggggcgccatggcgaccggagcgaacgccacgccgctggacttcccaagtaagaagaggaagaggagccgatggaaccaagacacaatggaacagaagacagtgattccaggcatgcctacggttatcccccctggcctgactcgggaacaagaaagagcttatatagtgcaactacagatagaagacctgactcgtaaactgcgcacaggagacctgggcatcccccctaaccctgaggacaggtccccttcccctgagccaatctacaacagcgaggggaagcggcttaatactcgagaattccgtacccgaaaaaagcttgaagaggagcggcataccctcattacggagatggttgctctcaacccagactttaaaccacctgcagattacaagcctccagcaacacgtgtgagcgataaagtaatgatcccccaagacgagtatccagaaatcaattttgtggggctcctaattgggcccagagggaacaccctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgtctctcatgtctacaactcagagtcgcccaccctggatgaattctggtccttcagagaatcggccctaccatggcatgcatggaggtggtcctggtgggcctggaggtggcccccacagtttcccacacccattacccagcctgacaggtgggcatggtggacatcccatgcagcacaacccaaatggaccaccaccaccttggatgcagccaccaccaccaccgatgaaccagggcccccacccacctgggcaccatggccctcctccaatggatcagtacctgggaagtacgcctgtgggctctggggtctatcgcctgcatcaaggaaaaggtatgatgccgccgccgcctatgggcatgatgccgccgcctccgccacctcccagtgggcagcccccgcctcctccctctggtcctcttcctccatggcagcagcagcagcagcagcctccaccaccccctccgcccagcagcagtatggcttccagcacccccttgccatggcagcaaagatccctccccgcagcagcgatggcccgagccatgagagtgaggactttccgcgcccattggtgacccttccaggcagacagcctcaacagcgcccctggtggacaggatggttcggcaaagcagcctgagttatttttgtggacggaatcggaacacgctggctccatatcgtgaaatttttattaatttttatctttttcctttgttatttccttatcttttcctttcttcagactccgtccaaggagatgctctccccgatcttctgctgcagataggatccttccccttgtctccattcctttcctcccataggggagaggggcaaatggtttaggcacaggctttggctagtaatgtcaggcgtggtggtggcggcggggtcctattgttctaatttgttgaagggcctcaaccacactcaaagaagggtggtttatcttcgacatcttaaagagtcttgataatcctgacattgctaaataggggtaatccggcagtgggattcattcatatcttcctgcactcctgccagcagtacatggcacagcccaagccaccctaggccagcctggagtcttttccatgctctgatcacctaagctgcctcagaactcatttgcttctctccttcctggaaagcttccctttatgttttattttgaccccagatgtccagatgttttgcagtgtctggggcttgtgccccttgttgttcgttctgcttctttgcccctttcctctacatggagtgattatgttgacaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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