2024-05-03 05:42:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_021598 861 bp mRNA linear ROD 17-JUL-2023 DEFINITION Rattus norvegicus mast cell protease 8 (Mcpt8), mRNA. ACCESSION NM_021598 XM_039093841 VERSION NM_021598.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 861) AUTHORS Puente XS and Lopez-Otin C. TITLE A genomic analysis of rat proteases and protease inhibitors JOURNAL Genome Res 14 (4), 609-622 (2004) PUBMED 15060002 REFERENCE 2 (bases 1 to 861) AUTHORS Lutzelschwab C, Pejler G, Aveskogh M and Hellman L. TITLE Secretory granule proteases in rat mast cells. Cloning of 10 different serine proteases and a carboxypeptidase A from various rat mast cell populations JOURNAL J Exp Med 185 (1), 13-29 (1997) PUBMED 8996238 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000269.1. On or before Mar 15, 2021 this sequence version replaced XM_039093841.1, NM_021598.2. ##Evidence-Data-START## Transcript exon combination :: U67911.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA5760400, SAMEA5760476 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on expression ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-84 JACYVU010000269.1 1131-1214 85-235 JACYVU010000269.1 2380-2530 236-368 JACYVU010000269.1 2855-2987 369-623 JACYVU010000269.1 3210-3464 624-861 JACYVU010000269.1 3876-4113 FEATURES Location/Qualifiers source 1..861 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="15" /map="15p12" gene 1..861 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /note="mast cell protease 8" /db_xref="GeneID:29269" /db_xref="RGD:3067" exon 1..84 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /inference="alignment:Splign:2.1.0" CDS 30..776 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /note="mast cell protease VIII" /codon_start=1 /product="mast cell protease 8 precursor" /protein_id="NP_067609.2" /db_xref="GeneID:29269" /db_xref="RGD:3067" /translation="
MFLFLFFLVAILPVNTEGGEIIWGTESKPHSRPYMAFIKFYDSNSEPHHCGGFLVAKDIVMTAAHCNGRNIKVTLGAHNIKKQENTQVISVVKAKPHENYDRDSHFNDIMLLKLERKAQLNGVVKTIALPRSQDWVKPGQVCTVAGWGRLANCTSSNTLQEVNLEVQKGQKCQDMSEDYNDSIQLCVGNPSEGKATGKGDSGGPFVCDGVAQGIVSYRLCTGTLPRVFTRISSFIPWIQKTMKVLQQS"
sig_peptide 30..83 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /inference="COORDINATES: ab initio prediction:SignalP:4.0" mat_peptide 84..773 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /product="mast cell protease 8" misc_feature 90..752 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /note="Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad...; Region: Tryp_SPc; cd00190" /db_xref="CDD:238113" misc_feature 90..92 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /note="cleavage site [active]" /db_xref="CDD:238113" misc_feature order(222..224,351..353,630..632) /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /note="active site" /db_xref="CDD:238113" misc_feature 228..230 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /note="N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (P97594.2); glycosylation site" misc_feature 483..485 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /note="N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (P97594.2); glycosylation site" misc_feature 567..569 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /note="N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (P97594.2); glycosylation site" misc_feature order(612..614,675..677,681..683) /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /note="substrate binding sites [chemical binding]; other site" /db_xref="CDD:238113" exon 85..235 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /inference="alignment:Splign:2.1.0" exon 236..368 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /inference="alignment:Splign:2.1.0" exon 369..623 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /inference="alignment:Splign:2.1.0" exon 624..861 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /inference="alignment:Splign:2.1.0" ORIGIN
agttgagacctggtcagaccctgaagaggatgttcctgttcctgttcttcctggtggccatcctaccagtcaacactgaaggaggagagatcatatggggtacagagtccaaaccccactcccggccctacatggcattcataaagttttatgatagtaattcagaaccccatcactgtggcggtttcctggtggcaaaagacatcgtaatgacagcagctcactgtaatggaagaaatataaaagtaaccttaggtgctcacaatatcaagaaacaagaaaacacccaggttatctctgttgtaaaagccaaacctcacgagaactatgacagagattcacattttaatgacatcatgctcctgaagttggaacgcaaagctcaactcaatggtgttgtgaagactattgcccttcctaggagccaggactgggtgaaacctgggcaggtgtgcacagtggcaggttggggacgcttggccaattgtacttcgtctaacacacttcaagaagtgaatctagaagttcagaaaggccagaagtgccaagacatgtccgaagactacaacgactccatccagctttgtgtgggaaaccccagcgaggggaaggctactggtaagggagactcagggggtccctttgtgtgcgatggagtggcccagggcattgtcagttatcgcttgtgtactgggacacttcctcgagtattcaccagaatctccagctttataccgtggattcagaaaacaatgaaagtccttcaacaatcctagaacacaaaacctgtgtctgggccaatgtccagcatcctggggtatggctatctgagtcttaataaagaaatctgtctgcaggaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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