LOCUS       NM_001431273            1780 bp    mRNA    linear   ROD 12-JUL-2024
DEFINITION  Rattus norvegicus calreticulin 4 (Calr4), transcript variant 2,
            mRNA.
ACCESSION   NM_001431273 XM_039111170
VERSION     NM_001431273.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1780)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jul 10, 2024 this sequence version replaced XM_039111170.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643285.19994.1,
                                           SRR26360194.2070718.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-223               JAXUCZ010000005.1  129221758-129221980
            224-325             JAXUCZ010000005.1  129232810-129232911
            326-529             JAXUCZ010000005.1  129235976-129236179
            530-624             JAXUCZ010000005.1  129239714-129239808
            625-834             JAXUCZ010000005.1  129241326-129241535
            835-948             JAXUCZ010000005.1  129241985-129242098
            949-1092            JAXUCZ010000005.1  129243095-129243238
            1093-1185           JAXUCZ010000005.1  129247835-129247927
            1186-1780           JAXUCZ010000005.1  129250483-129251077
FEATURES             Location/Qualifiers
     source          1..1780
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q34"
     gene            1..1780
                     /gene="Calr4"
                     /note="calreticulin 4"
                     /db_xref="GeneID:689537"
                     /db_xref="RGD:1591090"
     exon            1..223
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
     CDS             103..1437
                     /gene="Calr4"
                     /note="isoform 2 is encoded by transcript variant 2;
                     rCG50286-like"
                     /codon_start=1
                     /product="calreticulin 4 isoform 2"
                     /protein_id="NP_001418202.1"
                     /db_xref="GeneID:689537"
                     /db_xref="RGD:1591090"
                     /translation="

MLRLGKNRPGQMPEPKGPGPAGLSRAQVQTDGEDVSGGCRDGWTKRWVQSKHQSDYGKFRLDSGKFYQDKERDKGLQTTEDAKFYALSARFKPFSNENETLVVQFSVKHEQGIDCGGGYVKLFPATLNQEDMHSESQYYIMFGPDICGFGNNRLQVILYHRGKYHENNKTLKCRINKDTHLYTLILRPNATYEVKIDNEKVTGGELEADWDFLPPKKIKDPYARKPRKWDERLQIEDPEDKKPEDWQDSEFIPDPDAKKPDDWNEAMDGVWEGPLIPNVKYKGEWKPRIIDNPNYQGEWIHPEIDNPKYRPDPTICHYHNISVLGLDLWQVKSGSIFDNFLLTNDEEFAEEVGNMTWGLRKDVEQQWRELYEEMEKQKEAEEAKKKREKQRAKQEDIWGLDEEDEEENEEDAEEEAEERPKQEGSGERASVDQKEAHFEQKDEL"

     misc_feature    223..1128
                     /gene="Calr4"
                     /note="Calreticulin family; Region: Calreticulin;
                     pfam00262"
                     /db_xref="CDD:459737"
     misc_feature    <1141..>1287
                     /gene="Calr4"
                     /note="recombination and DNA strand exchange inhibitor
                     protein; Reviewed; Region: PRK00409"
                     /db_xref="CDD:234750"
     exon            224..325
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
     exon            326..529
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
     exon            530..624
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
     exon            625..834
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
     exon            835..948
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
     exon            949..1092
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
     exon            1093..1185
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
     exon            1186..1780
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agacacactggggacagcccagcaggactgaggaacaccctgcagctcaggcctccgactgataagcaattgagaccatctgtgaatcagggacacttggacatgctgaggctggggaagaatcgccctggacagatgcccgaaccaaagggacctggtccagctggcctttccagagctcaagtacaaactgatggcgaggatgtctctggaggctgcagggatggatggacaaaacggtgggtgcaatctaaacatcagtcagattacggtaaattccggcttgattcaggaaaattttatcaagataaagagagagataaaggtctccagaccacagaagatgccaagttctatgccctttccgccaggtttaagccattcagcaatgagaatgagaccttggtggttcagttttcagtaaaacatgagcagggcatcgattgcggcggtgggtatgtgaaactctttcctgccacgctgaaccaggaggatatgcactcagaatcccagtattacatcatgttcggcccagacatctgtggctttggcaacaacagactacaggtcatcctttatcaccgagggaaataccatgagaacaacaagaccctcaagtgcaggattaataaagacactcacttgtacacactgatccttcgccctaatgctacttacgaggttaaaattgacaatgagaaggtgacaggaggagaactggaagctgactgggacttcttgcctcccaagaaaataaaagatccctacgccaggaaaccgaggaaatgggacgaacggctacagatagaggatcctgaagataagaaacctgaggactggcaggactctgaattcatcccagaccctgatgccaagaagccggatgactggaatgaggcaatggatggggtgtgggaagggcccctgataccaaatgtcaagtacaagggagaatggaagcctcggatcattgacaatcccaattaccagggggagtggattcacccagagatagacaaccccaaatacaggcctgaccccaccatttgtcactaccataatatcagcgtccttggcctggatctttggcaggtgaaatcaggcagcatctttgacaatttccttctaacaaatgatgaagaatttgctgaagaggttggaaatatgacctggggattaagaaaggatgtggagcagcagtggagagagctgtatgaagaaatggagaaacagaaggaggcggaagaggccaagaagaaaagggaaaagcagcgagccaagcaagaagacatctggggactagatgaggaggatgaggaggaaaatgaagaggacgctgaggaggaagcagaggaaaggcccaagcaggaaggcagcggcgagagggcatcagtggatcaaaaggaagcccattttgagcagaaggatgaactgtaactgcagagacaatgggtatgggagaagcaagagacggtgcttaggaagggaaatggtcacaagcttagcaaattatggggagtaaaacaactgtctttatagataaactttggatttatatttctactccccttccctgctctattttgcttattggtagaaagggaatgataattttatctcaggaggtggctgtagagactgaatgaggtaatgtgtgtaaagtgcccaaagtaaatacattataaaaatgtagtagttaaaactactgccattatcatggtgttcaataaattatttgtcggtaataaacttctatataaacttggttctttcatttgaa

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