LOCUS       NM_001431272            1764 bp    mRNA    linear   ROD 10-JUL-2024
DEFINITION  Rattus norvegicus calreticulin 4 (Calr4), transcript variant 1,
            mRNA.
ACCESSION   NM_001431272 XM_039111174
VERSION     NM_001431272.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jul 10, 2024 this sequence version replaced XM_039111174.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.862601.1,
                                           SRR22582424.1258682.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-207               JAXUCZ010000005.1  129216207-129216413
            208-309             JAXUCZ010000005.1  129232810-129232911
            310-513             JAXUCZ010000005.1  129235976-129236179
            514-608             JAXUCZ010000005.1  129239714-129239808
            609-818             JAXUCZ010000005.1  129241326-129241535
            819-932             JAXUCZ010000005.1  129241985-129242098
            933-1076            JAXUCZ010000005.1  129243095-129243238
            1077-1169           JAXUCZ010000005.1  129247835-129247927
            1170-1764           JAXUCZ010000005.1  129250483-129251077
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q34"
     gene            1..1764
                     /gene="Calr4"
                     /note="calreticulin 4"
                     /db_xref="GeneID:689537"
                     /db_xref="RGD:1591090"
     exon            1..207
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    87..89
                     /gene="Calr4"
                     /note="upstream in-frame stop codon"
     CDS             102..1421
                     /gene="Calr4"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; rCG50286-like"
                     /codon_start=1
                     /product="calreticulin 4 isoform 1 precursor"
                     /protein_id="NP_001418201.1"
                     /db_xref="GeneID:689537"
                     /db_xref="RGD:1591090"
                     /translation="

MKSLSLLPLLLLTTCTLRTQGKRRQVYFREEFEDGDGWTKRWVQSKHQSDYGKFRLDSGKFYQDKERDKGLQTTEDAKFYALSARFKPFSNENETLVVQFSVKHEQGIDCGGGYVKLFPATLNQEDMHSESQYYIMFGPDICGFGNNRLQVILYHRGKYHENNKTLKCRINKDTHLYTLILRPNATYEVKIDNEKVTGGELEADWDFLPPKKIKDPYARKPRKWDERLQIEDPEDKKPEDWQDSEFIPDPDAKKPDDWNEAMDGVWEGPLIPNVKYKGEWKPRIIDNPNYQGEWIHPEIDNPKYRPDPTICHYHNISVLGLDLWQVKSGSIFDNFLLTNDEEFAEEVGNMTWGLRKDVEQQWRELYEEMEKQKEAEEAKKKREKQRAKQEDIWGLDEEDEEENEEDAEEEAEERPKQEGSGERASVDQKEAHFEQKDEL"

     sig_peptide     102..164
                     /gene="Calr4"
                     /inference="COORDINATES: ab initio prediction:SignalP:6.0"
     misc_feature    183..1112
                     /gene="Calr4"
                     /note="Calreticulin family; Region: Calreticulin;
                     pfam00262"
                     /db_xref="CDD:459737"
     misc_feature    <1125..>1271
                     /gene="Calr4"
                     /note="recombination and DNA strand exchange inhibitor
                     protein; Reviewed; Region: PRK00409"
                     /db_xref="CDD:234750"
     exon            208..309
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
     exon            310..513
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
     exon            514..608
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
     exon            609..818
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
     exon            819..932
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
     exon            933..1076
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
     exon            1077..1169
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
     exon            1170..1764
                     /gene="Calr4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcaggtgatgtcagcctgaaccccagggccaaggttaggagacagcacaaagcgtctggttgggtagcacctctctgagacctctctgaaggactgtgaagatgaagagcctgtcgctgctgcctctgctgctgctgaccacctgcaccttgaggacgcaggggaagaggcggcaagtctacttccgggaggagttcgaagatggcgatggatggacaaaacggtgggtgcaatctaaacatcagtcagattacggtaaattccggcttgattcaggaaaattttatcaagataaagagagagataaaggtctccagaccacagaagatgccaagttctatgccctttccgccaggtttaagccattcagcaatgagaatgagaccttggtggttcagttttcagtaaaacatgagcagggcatcgattgcggcggtgggtatgtgaaactctttcctgccacgctgaaccaggaggatatgcactcagaatcccagtattacatcatgttcggcccagacatctgtggctttggcaacaacagactacaggtcatcctttatcaccgagggaaataccatgagaacaacaagaccctcaagtgcaggattaataaagacactcacttgtacacactgatccttcgccctaatgctacttacgaggttaaaattgacaatgagaaggtgacaggaggagaactggaagctgactgggacttcttgcctcccaagaaaataaaagatccctacgccaggaaaccgaggaaatgggacgaacggctacagatagaggatcctgaagataagaaacctgaggactggcaggactctgaattcatcccagaccctgatgccaagaagccggatgactggaatgaggcaatggatggggtgtgggaagggcccctgataccaaatgtcaagtacaagggagaatggaagcctcggatcattgacaatcccaattaccagggggagtggattcacccagagatagacaaccccaaatacaggcctgaccccaccatttgtcactaccataatatcagcgtccttggcctggatctttggcaggtgaaatcaggcagcatctttgacaatttccttctaacaaatgatgaagaatttgctgaagaggttggaaatatgacctggggattaagaaaggatgtggagcagcagtggagagagctgtatgaagaaatggagaaacagaaggaggcggaagaggccaagaagaaaagggaaaagcagcgagccaagcaagaagacatctggggactagatgaggaggatgaggaggaaaatgaagaggacgctgaggaggaagcagaggaaaggcccaagcaggaaggcagcggcgagagggcatcagtggatcaaaaggaagcccattttgagcagaaggatgaactgtaactgcagagacaatgggtatgggagaagcaagagacggtgcttaggaagggaaatggtcacaagcttagcaaattatggggagtaaaacaactgtctttatagataaactttggatttatatttctactccccttccctgctctattttgcttattggtagaaagggaatgataattttatctcaggaggtggctgtagagactgaatgaggtaatgtgtgtaaagtgcccaaagtaaatacattataaaaatgtagtagttaaaactactgccattatcatggtgttcaataaattatttgtcggtaataaacttctatataaacttggttctttcatttgaa

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