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Previous release (v1)
2024-04-30 01:00:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001409278 2950 bp mRNA linear ROD 17-JUL-2023
DEFINITION Rattus norvegicus zinc finger protein 431-like (LOC120094815),
transcript variant 3, mRNA.
ACCESSION NM_001409278 XM_039084901
VERSION NM_001409278.1
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
JACYVU010000215.1.
On Jul 12, 2022 this sequence version replaced XM_039084901.1.
##Evidence-Data-START##
Transcript exon combination :: SRR8487231.64752.1,
SRR8487226.25842.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMD00132291, SAMD00132292
[ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-124 JACYVU010000215.1 46657105-46657228
125-192 JACYVU010000215.1 46684832-46684899
193-319 JACYVU010000215.1 46690077-46690203
320-380 JACYVU010000215.1 46690395-46690455
381-2950 JACYVU010000215.1 46691634-46694203
FEATURES Location/Qualifiers
source 1..2950
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
/chromosome="9"
/map="9q38"
gene 1..2950
/gene="LOC120094815"
/note="zinc finger protein 431-like"
/db_xref="GeneID:120094815"
/db_xref="RGD:41247165"
exon 1..124
/gene="LOC120094815"
/inference="alignment:Splign:2.1.0"
exon 125..192
/gene="LOC120094815"
/inference="alignment:Splign:2.1.0"
misc_feature 163..165
/gene="LOC120094815"
/note="upstream in-frame stop codon"
CDS 169..2589
/gene="LOC120094815"
/note="isoform 2 is encoded by transcript variant 3"
/codon_start=1
/product="zinc finger protein 431-like isoform 2"
/protein_id="NP_001396207.1"
/db_xref="GeneID:120094815"
/db_xref="RGD:41247165"
/translation="
MRMEFNAKDALTYDDVHVNFTREEWALLDPSQKSLYKDVMLETYRNLTAIGYNWEDHTIDEHCQSFRRHGRHERCHPGEKPSENTQCGKAFAQQSHLQRHKSTHTGEKLYECKPHDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCNLGRHKLIHTGRKSYKYNQCGKDFAGLSHLKTHGITHTGGKPYKCDQCGKAFAYHSSLQVHKRIHTGEKPYVCDQCGKAFAQLGHLQVHGITHTGEKPYKCDQCGKAFAHHSYLQVHKRIHTGEKLCECDQCGKAFLSHSYLQVHKRIHTGENLYECDQCGKAFTSHSYLQVHKRIHTGEKLYECDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKAFARLSYLKTHGITHTGEKPYKCDQCGKAFEHRCNLGSHKLIHTGEKPYKCDQCGKAFSSHSYLQVHKRIHTGEKLCECDQCGKAFSSHSYLQVHKRIHTGQNLYECDQCGKAFASHSYLQVHKRIHTGEKLCECDQCGKAFSSHSYLQVHKRIHTGEKLYECDQCGKAFASHSYLQVHKRIHTGENLYECDQCSKAFASHSYLQVHKRIHTGEKPYVCDWCNKAFAYHSYLQVHKRIHTGEKPYVCDQCGKDFVVPSELKRHKRIHTGEKPYKCNECGKAFVGQNDLKKHRRTHTGEKPYKCNECGKAFVFNFNLRAHKVIHTGEKPYKCSECGKAFACNTSLRTHKAIHTGVKPFECKQCGKAFACNTSLQTHRAIHTGVKPFECKQCGKAFVGQNDLKRHERIHTGEKPYECNECGKAFSQSSQLQLHKRTHTY"
misc_feature 199..321
/gene="LOC120094815"
/note="KRAB box; Region: KRAB; pfam01352"
/db_xref="CDD:426216"
misc_feature 379..1623
/gene="LOC120094815"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 421..480
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 502..564
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 586..648
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(586..588,595..597,634..636,646..648)
/gene="LOC120094815"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 673..732
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 754..816
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(754..756,763..765,802..804,814..816)
/gene="LOC120094815"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(769..771,775..777,781..783,787..792,799..804,
811..813,853..855,859..861,871..876,883..888,895..897,
937..939,943..945,949..951,955..960,967..972,979..981)
/gene="LOC120094815"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 838..900
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 922..984
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1006..1068
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1006..1008,1015..1017,1054..1056,1066..1068)
/gene="LOC120094815"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1078..2322
/gene="LOC120094815"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 1090..1152
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1090..1092,1099..1101,1138..1140,1150..1152)
/gene="LOC120094815"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1105..1107,1111..1113,1117..1119,1123..1128,
1135..1140,1147..1149,1189..1191,1195..1197,1207..1212,
1219..1224,1231..1233,1273..1275,1279..1281,1285..1287,
1291..1296,1303..1308,1315..1317)
/gene="LOC120094815"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1174..1236
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1258..1320
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1342..1404
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1426..1488
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1510..1572
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1594..1656
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1594..1596,1603..1605,1642..1644,1654..1656)
/gene="LOC120094815"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1678..1740
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1762..1824
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1762..1764,1771..1773,1810..1812,1822..1824)
/gene="LOC120094815"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1846..1908
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1846..1848,1855..1857,1894..1896,1906..1908)
/gene="LOC120094815"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1861..1863,1867..1869,1873..1875,1879..1884,
1891..1896,1903..1905,1945..1947,1951..1953,1963..1968,
1975..1980,1987..1989,2029..2031,2035..2037,2041..2043,
2047..2052,2059..2064,2071..2073)
/gene="LOC120094815"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1930..1992
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2014..2076
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2098..2160
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2182..2244
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2266..2328
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2302..2379
/gene="LOC120094815"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:433230"
misc_feature 2350..2412
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2350..2352,2359..2361,2398..2400,2410..2412)
/gene="LOC120094815"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(2365..2367,2371..2373,2377..2379,2383..2388,
2395..2400,2407..2409,2449..2451,2455..2457,2467..2472,
2479..2484,2491..2493,2533..2535,2539..2541,2545..2547,
2551..2556,2563..2568,2575..2577)
/gene="LOC120094815"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2422..>2586
/gene="LOC120094815"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 2434..2496
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2470..2547
/gene="LOC120094815"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:433230"
misc_feature 2518..2580
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
exon 193..319
/gene="LOC120094815"
/inference="alignment:Splign:2.1.0"
exon 320..380
/gene="LOC120094815"
/inference="alignment:Splign:2.1.0"
exon 381..2950
/gene="LOC120094815"
/inference="alignment:Splign:2.1.0"
ORIGIN
gggtgcctaggtgtaggattcgcttagtagttaagcagtcttaactggtcctggctgctgtgctctctgtcctgccgttgaattctctgaggcatgttcaggcaagctccaaagttgcgacatggttcaaagtgagtcttaactaccaggagatcccccaagtgaggcatgagaatggagtttaatgcaaaggatgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgctggagacctacaggaacctcactgctataggttacaattgggaagaccatactattgatgagcattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatcctggagagaaaccctctgaaaatactcagtgtggtaaagcctttgcacaacagagtcatctccaaagacataaaagcacacatactggagagaaactctatgaatgtaagccacatgataaagcctttacatacgattctcagcttcaaactcttgaaagaattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatacaatcaatgtggtaaagactttgcaggactcagtcatctcaaaacacatggaataacacatactggagggaaaccttacaaatgtgatcaatgtggtaaagcctttgcatatcatagttctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgaccaatgtggtaaagcctttgcacaactcggtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcacatcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagcctttttatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagcctttgctcgactcagttatctcaaaacgcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgaacatcgttgtaatcttggaagtcataaattaatacatactggagagaaaccttacaaatgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggacagaatctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagccttttcatctcatagttatctacaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcagtgtagtaaagcctttgcatctcatagttatctccaagtacataaaagaatacacactggagagaagccctatgtatgtgattggtgtaataaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttccgagtgagcttaaaagacataaaagaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacatagaagaacacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtattcaattttaatctccgagcacataaagtaatacatactggagagaaaccttacaaatgtagtgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgcatgtaacactagtctccaaacacatagagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagccttttcacaatcaagccaactccaactacataaaagaacacatacatactaaagagtaaccctgtgaatgtaaccaatgcagtaaagcctttactgtgatattcaaaggtatggtggttaaaatatacttggcccatggcaagtggcattgttatgaggtatggcccttttggagtagatgtggcctttgaggatgtgtgtcactgtgggggagggggtggtggtggttggctttgagaccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctccagcaccatgtctgcttggacactgagattccttccaccttgataatagactgaacctctgaatctgtataccctccccccaattaaatgtcctttctaaga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]