2024-05-06 10:15:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001409277 2925 bp mRNA linear ROD 17-JUL-2023 DEFINITION Rattus norvegicus zinc finger protein 431-like (LOC120094815), transcript variant 2, mRNA. ACCESSION NM_001409277 XM_039084900 VERSION NM_001409277.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000215.1. On Jul 12, 2022 this sequence version replaced XM_039084900.1. ##Evidence-Data-START## Transcript exon combination :: SRR8487226.108265.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00132261, SAMD00132262 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on expression, longest protein ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-99 JACYVU010000215.1 46672448-46672546 100-167 JACYVU010000215.1 46684832-46684899 168-294 JACYVU010000215.1 46690077-46690203 295-355 JACYVU010000215.1 46690395-46690455 356-2925 JACYVU010000215.1 46691634-46694203 FEATURES Location/Qualifiers source 1..2925 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="9" /map="9q38" gene 1..2925 /gene="LOC120094815" /note="zinc finger protein 431-like" /db_xref="GeneID:120094815" /db_xref="RGD:41247165" exon 1..99 /gene="LOC120094815" /inference="alignment:Splign:2.1.0" exon 100..167 /gene="LOC120094815" /inference="alignment:Splign:2.1.0" misc_feature 138..140 /gene="LOC120094815" /note="upstream in-frame stop codon" CDS 144..2564 /gene="LOC120094815" /note="isoform 2 is encoded by transcript variant 2" /codon_start=1 /product="zinc finger protein 431-like isoform 2" /protein_id="NP_001396206.1" /db_xref="GeneID:120094815" /db_xref="RGD:41247165" /translation="
MRMEFNAKDALTYDDVHVNFTREEWALLDPSQKSLYKDVMLETYRNLTAIGYNWEDHTIDEHCQSFRRHGRHERCHPGEKPSENTQCGKAFAQQSHLQRHKSTHTGEKLYECKPHDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCNLGRHKLIHTGRKSYKYNQCGKDFAGLSHLKTHGITHTGGKPYKCDQCGKAFAYHSSLQVHKRIHTGEKPYVCDQCGKAFAQLGHLQVHGITHTGEKPYKCDQCGKAFAHHSYLQVHKRIHTGEKLCECDQCGKAFLSHSYLQVHKRIHTGENLYECDQCGKAFTSHSYLQVHKRIHTGEKLYECDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKAFARLSYLKTHGITHTGEKPYKCDQCGKAFEHRCNLGSHKLIHTGEKPYKCDQCGKAFSSHSYLQVHKRIHTGEKLCECDQCGKAFSSHSYLQVHKRIHTGQNLYECDQCGKAFASHSYLQVHKRIHTGEKLCECDQCGKAFSSHSYLQVHKRIHTGEKLYECDQCGKAFASHSYLQVHKRIHTGENLYECDQCSKAFASHSYLQVHKRIHTGEKPYVCDWCNKAFAYHSYLQVHKRIHTGEKPYVCDQCGKDFVVPSELKRHKRIHTGEKPYKCNECGKAFVGQNDLKKHRRTHTGEKPYKCNECGKAFVFNFNLRAHKVIHTGEKPYKCSECGKAFACNTSLRTHKAIHTGVKPFECKQCGKAFACNTSLQTHRAIHTGVKPFECKQCGKAFVGQNDLKRHERIHTGEKPYECNECGKAFSQSSQLQLHKRTHTY"
misc_feature 174..296 /gene="LOC120094815" /note="KRAB box; Region: KRAB; pfam01352" /db_xref="CDD:426216" misc_feature 354..1598 /gene="LOC120094815" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 396..455 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 477..539 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 561..623 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(561..563,570..572,609..611,621..623) /gene="LOC120094815" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 648..707 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 729..791 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(729..731,738..740,777..779,789..791) /gene="LOC120094815" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(744..746,750..752,756..758,762..767,774..779, 786..788,828..830,834..836,846..851,858..863,870..872, 912..914,918..920,924..926,930..935,942..947,954..956) /gene="LOC120094815" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 813..875 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 897..959 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 981..1043 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(981..983,990..992,1029..1031,1041..1043) /gene="LOC120094815" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 1053..2297 /gene="LOC120094815" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 1065..1127 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1065..1067,1074..1076,1113..1115,1125..1127) /gene="LOC120094815" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(1080..1082,1086..1088,1092..1094,1098..1103, 1110..1115,1122..1124,1164..1166,1170..1172,1182..1187, 1194..1199,1206..1208,1248..1250,1254..1256,1260..1262, 1266..1271,1278..1283,1290..1292) /gene="LOC120094815" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1149..1211 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1233..1295 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1317..1379 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1401..1463 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1485..1547 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1569..1631 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1569..1571,1578..1580,1617..1619,1629..1631) /gene="LOC120094815" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 1653..1715 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1737..1799 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1737..1739,1746..1748,1785..1787,1797..1799) /gene="LOC120094815" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 1821..1883 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1821..1823,1830..1832,1869..1871,1881..1883) /gene="LOC120094815" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(1836..1838,1842..1844,1848..1850,1854..1859, 1866..1871,1878..1880,1920..1922,1926..1928,1938..1943, 1950..1955,1962..1964,2004..2006,2010..2012,2016..2018, 2022..2027,2034..2039,2046..2048) /gene="LOC120094815" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1905..1967 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1989..2051 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2073..2135 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2157..2219 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2241..2303 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2277..2354 /gene="LOC120094815" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:433230" misc_feature 2325..2387 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2325..2327,2334..2336,2373..2375,2385..2387) /gene="LOC120094815" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(2340..2342,2346..2348,2352..2354,2358..2363, 2370..2375,2382..2384,2424..2426,2430..2432,2442..2447, 2454..2459,2466..2468,2508..2510,2514..2516,2520..2522, 2526..2531,2538..2543,2550..2552) /gene="LOC120094815" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 2397..>2561 /gene="LOC120094815" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 2409..2471 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2445..2522 /gene="LOC120094815" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:433230" misc_feature 2493..2555 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" exon 168..294 /gene="LOC120094815" /inference="alignment:Splign:2.1.0" exon 295..355 /gene="LOC120094815" /inference="alignment:Splign:2.1.0" exon 356..2925 /gene="LOC120094815" /inference="alignment:Splign:2.1.0" ORIGIN
agtagttaagcagtcttaactggtcctggctgctgtgctctctgtcctgccgttggattctctgaggcatgttcaggcaagctccaaagttgcgacatggttcaaagtgagtcttaactaccaggagatcccccaagtgaggcatgagaatggagtttaatgcaaaggatgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgctggagacctacaggaacctcactgctataggttacaattgggaagaccatactattgatgagcattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatcctggagagaaaccctctgaaaatactcagtgtggtaaagcctttgcacaacagagtcatctccaaagacataaaagcacacatactggagagaaactctatgaatgtaagccacatgataaagcctttacatacgattctcagcttcaaactcttgaaagaattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatacaatcaatgtggtaaagactttgcaggactcagtcatctcaaaacacatggaataacacatactggagggaaaccttacaaatgtgatcaatgtggtaaagcctttgcatatcatagttctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgaccaatgtggtaaagcctttgcacaactcggtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcacatcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagcctttttatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagcctttgctcgactcagttatctcaaaacgcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgaacatcgttgtaatcttggaagtcataaattaatacatactggagagaaaccttacaaatgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggacagaatctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagccttttcatctcatagttatctacaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcagtgtagtaaagcctttgcatctcatagttatctccaagtacataaaagaatacacactggagagaagccctatgtatgtgattggtgtaataaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttccgagtgagcttaaaagacataaaagaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacatagaagaacacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtattcaattttaatctccgagcacataaagtaatacatactggagagaaaccttacaaatgtagtgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgcatgtaacactagtctccaaacacatagagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagccttttcacaatcaagccaactccaactacataaaagaacacatacatactaaagagtaaccctgtgaatgtaaccaatgcagtaaagcctttactgtgatattcaaaggtatggtggttaaaatatacttggcccatggcaagtggcattgttatgaggtatggcccttttggagtagatgtggcctttgaggatgtgtgtcactgtgggggagggggtggtggtggttggctttgagaccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctccagcaccatgtctgcttggacactgagattccttccaccttgataatagactgaacctctgaatctgtataccctccccccaattaaatgtcctttctaaga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]