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Previous release (v1)
2024-04-29 22:44:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001409277 2925 bp mRNA linear ROD 17-JUL-2023
DEFINITION Rattus norvegicus zinc finger protein 431-like (LOC120094815),
transcript variant 2, mRNA.
ACCESSION NM_001409277 XM_039084900
VERSION NM_001409277.1
KEYWORDS RefSeq; RefSeq Select.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
JACYVU010000215.1.
On Jul 12, 2022 this sequence version replaced XM_039084900.1.
##Evidence-Data-START##
Transcript exon combination :: SRR8487226.108265.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMD00132261, SAMD00132262
[ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
RefSeq Select criteria :: based on expression, longest protein
##RefSeq-Attributes-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-99 JACYVU010000215.1 46672448-46672546
100-167 JACYVU010000215.1 46684832-46684899
168-294 JACYVU010000215.1 46690077-46690203
295-355 JACYVU010000215.1 46690395-46690455
356-2925 JACYVU010000215.1 46691634-46694203
FEATURES Location/Qualifiers
source 1..2925
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
/chromosome="9"
/map="9q38"
gene 1..2925
/gene="LOC120094815"
/note="zinc finger protein 431-like"
/db_xref="GeneID:120094815"
/db_xref="RGD:41247165"
exon 1..99
/gene="LOC120094815"
/inference="alignment:Splign:2.1.0"
exon 100..167
/gene="LOC120094815"
/inference="alignment:Splign:2.1.0"
misc_feature 138..140
/gene="LOC120094815"
/note="upstream in-frame stop codon"
CDS 144..2564
/gene="LOC120094815"
/note="isoform 2 is encoded by transcript variant 2"
/codon_start=1
/product="zinc finger protein 431-like isoform 2"
/protein_id="NP_001396206.1"
/db_xref="GeneID:120094815"
/db_xref="RGD:41247165"
/translation="
MRMEFNAKDALTYDDVHVNFTREEWALLDPSQKSLYKDVMLETYRNLTAIGYNWEDHTIDEHCQSFRRHGRHERCHPGEKPSENTQCGKAFAQQSHLQRHKSTHTGEKLYECKPHDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCNLGRHKLIHTGRKSYKYNQCGKDFAGLSHLKTHGITHTGGKPYKCDQCGKAFAYHSSLQVHKRIHTGEKPYVCDQCGKAFAQLGHLQVHGITHTGEKPYKCDQCGKAFAHHSYLQVHKRIHTGEKLCECDQCGKAFLSHSYLQVHKRIHTGENLYECDQCGKAFTSHSYLQVHKRIHTGEKLYECDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKAFARLSYLKTHGITHTGEKPYKCDQCGKAFEHRCNLGSHKLIHTGEKPYKCDQCGKAFSSHSYLQVHKRIHTGEKLCECDQCGKAFSSHSYLQVHKRIHTGQNLYECDQCGKAFASHSYLQVHKRIHTGEKLCECDQCGKAFSSHSYLQVHKRIHTGEKLYECDQCGKAFASHSYLQVHKRIHTGENLYECDQCSKAFASHSYLQVHKRIHTGEKPYVCDWCNKAFAYHSYLQVHKRIHTGEKPYVCDQCGKDFVVPSELKRHKRIHTGEKPYKCNECGKAFVGQNDLKKHRRTHTGEKPYKCNECGKAFVFNFNLRAHKVIHTGEKPYKCSECGKAFACNTSLRTHKAIHTGVKPFECKQCGKAFACNTSLQTHRAIHTGVKPFECKQCGKAFVGQNDLKRHERIHTGEKPYECNECGKAFSQSSQLQLHKRTHTY"
misc_feature 174..296
/gene="LOC120094815"
/note="KRAB box; Region: KRAB; pfam01352"
/db_xref="CDD:426216"
misc_feature 354..1598
/gene="LOC120094815"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 396..455
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 477..539
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 561..623
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(561..563,570..572,609..611,621..623)
/gene="LOC120094815"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 648..707
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 729..791
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(729..731,738..740,777..779,789..791)
/gene="LOC120094815"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(744..746,750..752,756..758,762..767,774..779,
786..788,828..830,834..836,846..851,858..863,870..872,
912..914,918..920,924..926,930..935,942..947,954..956)
/gene="LOC120094815"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 813..875
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 897..959
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 981..1043
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(981..983,990..992,1029..1031,1041..1043)
/gene="LOC120094815"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1053..2297
/gene="LOC120094815"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 1065..1127
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1065..1067,1074..1076,1113..1115,1125..1127)
/gene="LOC120094815"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1080..1082,1086..1088,1092..1094,1098..1103,
1110..1115,1122..1124,1164..1166,1170..1172,1182..1187,
1194..1199,1206..1208,1248..1250,1254..1256,1260..1262,
1266..1271,1278..1283,1290..1292)
/gene="LOC120094815"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1149..1211
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1233..1295
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1317..1379
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1401..1463
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1485..1547
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1569..1631
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1569..1571,1578..1580,1617..1619,1629..1631)
/gene="LOC120094815"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1653..1715
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1737..1799
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1737..1739,1746..1748,1785..1787,1797..1799)
/gene="LOC120094815"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1821..1883
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1821..1823,1830..1832,1869..1871,1881..1883)
/gene="LOC120094815"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1836..1838,1842..1844,1848..1850,1854..1859,
1866..1871,1878..1880,1920..1922,1926..1928,1938..1943,
1950..1955,1962..1964,2004..2006,2010..2012,2016..2018,
2022..2027,2034..2039,2046..2048)
/gene="LOC120094815"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1905..1967
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1989..2051
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2073..2135
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2157..2219
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2241..2303
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2277..2354
/gene="LOC120094815"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:433230"
misc_feature 2325..2387
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2325..2327,2334..2336,2373..2375,2385..2387)
/gene="LOC120094815"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(2340..2342,2346..2348,2352..2354,2358..2363,
2370..2375,2382..2384,2424..2426,2430..2432,2442..2447,
2454..2459,2466..2468,2508..2510,2514..2516,2520..2522,
2526..2531,2538..2543,2550..2552)
/gene="LOC120094815"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2397..>2561
/gene="LOC120094815"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 2409..2471
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2445..2522
/gene="LOC120094815"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:433230"
misc_feature 2493..2555
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
exon 168..294
/gene="LOC120094815"
/inference="alignment:Splign:2.1.0"
exon 295..355
/gene="LOC120094815"
/inference="alignment:Splign:2.1.0"
exon 356..2925
/gene="LOC120094815"
/inference="alignment:Splign:2.1.0"
ORIGIN
agtagttaagcagtcttaactggtcctggctgctgtgctctctgtcctgccgttggattctctgaggcatgttcaggcaagctccaaagttgcgacatggttcaaagtgagtcttaactaccaggagatcccccaagtgaggcatgagaatggagtttaatgcaaaggatgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgctggagacctacaggaacctcactgctataggttacaattgggaagaccatactattgatgagcattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatcctggagagaaaccctctgaaaatactcagtgtggtaaagcctttgcacaacagagtcatctccaaagacataaaagcacacatactggagagaaactctatgaatgtaagccacatgataaagcctttacatacgattctcagcttcaaactcttgaaagaattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatacaatcaatgtggtaaagactttgcaggactcagtcatctcaaaacacatggaataacacatactggagggaaaccttacaaatgtgatcaatgtggtaaagcctttgcatatcatagttctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgaccaatgtggtaaagcctttgcacaactcggtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcacatcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagcctttttatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagcctttgctcgactcagttatctcaaaacgcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgaacatcgttgtaatcttggaagtcataaattaatacatactggagagaaaccttacaaatgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggacagaatctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagccttttcatctcatagttatctacaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcagtgtagtaaagcctttgcatctcatagttatctccaagtacataaaagaatacacactggagagaagccctatgtatgtgattggtgtaataaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttccgagtgagcttaaaagacataaaagaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacatagaagaacacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtattcaattttaatctccgagcacataaagtaatacatactggagagaaaccttacaaatgtagtgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgcatgtaacactagtctccaaacacatagagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagccttttcacaatcaagccaactccaactacataaaagaacacatacatactaaagagtaaccctgtgaatgtaaccaatgcagtaaagcctttactgtgatattcaaaggtatggtggttaaaatatacttggcccatggcaagtggcattgttatgaggtatggcccttttggagtagatgtggcctttgaggatgtgtgtcactgtgggggagggggtggtggtggttggctttgagaccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctccagcaccatgtctgcttggacactgagattccttccaccttgataatagactgaacctctgaatctgtataccctccccccaattaaatgtcctttctaaga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]