2024-05-06 12:48:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001401000 2203 bp mRNA linear ROD 01-FEB-2022 DEFINITION Rattus norvegicus intestine-specific homeobox (Isx), transcript variant 1, mRNA. ACCESSION NM_001401000 XM_008772332 VERSION NM_001401000.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 2203) AUTHORS Widjaja-Adhi MA, Lobo GP, Golczak M and Von Lintig J. TITLE A genetic dissection of intestinal fat-soluble vitamin and carotenoid absorption JOURNAL Hum Mol Genet 24 (11), 3206-3219 (2015) PUBMED 25701869 REFERENCE 2 (bases 1 to 2203) AUTHORS Seino Y, Miki T, Kiyonari H, Abe T, Fujimoto W, Kimura K, Takeuchi A, Takahashi Y, Oiso Y, Iwanaga T and Seino S. TITLE Isx participates in the maintenance of vitamin A metabolism by regulation of beta-carotene 15,15'-monooxygenase (Bcmo1) expression JOURNAL J Biol Chem 283 (8), 4905-4911 (2008) PUBMED 18093975 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000303.1. On Feb 1, 2022 this sequence version replaced XM_008772332.2. COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1132 JACYVU010000303.1 13217637-13218768 1133-1284 JACYVU010000303.1 13236146-13236297 1285-1360 JACYVU010000303.1 13238046-13238121 1361-2203 JACYVU010000303.1 13238912-13239754 FEATURES Location/Qualifiers source 1..2203 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="19" /map="19p11" gene 1..2203 /gene="Isx" /note="intestine-specific homeobox" /db_xref="GeneID:682968" /db_xref="RGD:1592776" exon 1..1132 /gene="Isx" /inference="alignment:Splign:2.1.0" misc_feature 700..702 /gene="Isx" /note="upstream in-frame stop codon" CDS 916..1644 /gene="Isx" /note="isoform 1 is encoded by transcript variant 1" /codon_start=1 /product="intestine-specific homeobox isoform 1" /protein_id="NP_001387929.1" /db_xref="GeneID:682968" /db_xref="RGD:1592776" /translation="
MAGPTIQRDIEKSSGYCEAPEKLGLSFSIEAILKRPTERRNLPRPQSIGGGDSRQTTTSGSKLEKPTQDQPQEERKNKRRVRTTFTTEQLQELEKLFHFTHYPDIHVRSQLASRINLPEARVQIWFQNQRAKWRKQEKSGSLSAPQQPGSCTDAHCSAHIGATHRMLPPLSDSARFKLVPCPDSPCPMAPMGPAAPAWPSHPAALCPYLHPPTPKPQVGQHLCNANIRTGFSLPKQATLLPQ"
misc_feature order(1150..1164,1168..1170,1219..1221,1237..1239, 1276..1278,1282..1287,1294..1299,1303..1311,1315..1320) /gene="Isx" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(1156..1158,1165..1167,1285..1287,1294..1299, 1306..1308) /gene="Isx" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1159..1317 /gene="Isx" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 1133..1284 /gene="Isx" /inference="alignment:Splign:2.1.0" exon 1285..1360 /gene="Isx" /inference="alignment:Splign:2.1.0" exon 1361..2203 /gene="Isx" /inference="alignment:Splign:2.1.0" ORIGIN
acacatttctttgaacggaattcctggcaagatagagcagtgactgtcagctccgagcctggagtttattggacagggcgtcttcggggctgtctcagagacaggtaaagggcaatcaagcaggaaaaaagtagaaaggaccccaaaagaaggagaaacgggtgactaaagaatttagtatgtgactgaaagttgggaagaggagaacagcataaagaccagtggagaagagtcagaccacaggcctgaggtgaaagcaagcacagacctggcagtgacccagaatcgtccttaacctctgctgaagatctgcagaggtacaggagccctggaagtctgactcttgagactggaagctgaattgaggaagtccagaagggcctctgagaagaggctcagggctcacttggccacgaagaacccataggtggcaccctagcttcccagggactgcctgaggccagcaggaaggggacacgagtcagagagaggacaaaggtggatgctggctccaaatctctaggcagtgatatcatcccaccaactccgctgttttttttttctttctttgttttctggtatccttgagctcaggatctttgcctaggctggtgactgtgaaagcctccacctccaagaagaccctctctggaaaacttgacctgtggagacaggacaagtacccaccagctcttctgctaaaagccactttctaatcttggaggtgttcgaggtccatggaagtccctgtgttcaaggaattgtgccagagtcccccagcatcaggatctccaatcaccacctctgtgtgccctctgggtccccagaaactccagaaagaaaatataccaccttctgctggcatcgccccaggcacacacagagtgttcctcccagcagccttcagatcaggctatggcaggtcctaccatccagagggacatagagaagagttcaggatactgtgaggccccagagaagctgggcctgtctttctccattgaggcaattctgaagagacccacagaaagaagaaatttgcccagaccacaaagcattggtggtggggactccaggcagacaactacctcaggttctaagttggagaagcccacacaggatcagccccaagaggaaagaaagaacaagcggagagttcggactaccttcaccacagagcagctacaggagctggagaagctcttccacttcacccactaccccgacatccatgtccggtcccagctggcttccaggattaacctgcccgaagctcgagtacagatctggttccagaatcagagggccaagtggaggaagcaggagaagagtgggagcctcagtgccccacagcagcctgggtcctgtactgacgcccactgctctgcccacattggtgccacccacagaatgctacctcctctctcagactcagctcgcttcaagctggttccctgcccagattccccttgtcccatggcacccatgggacctgcagcccctgcctggccctctcacccagcagccttgtgtccctaccttcatcctcccacccccaaaccccaagtggggcagcatctgtgcaatgccaacataaggactggtttctctcttcccaagcaagcaactctcctccctcagtgatggccgacagccctggacctcagagaaaatcacttccacagtccatcaatggcccccagctgaggaagctacccagagcttgccattaaagactgtaccagccatggatgacagccaaggacagcacacatctcaccaagtcagtctcctagtgcaaaatcctggctgactaagggctgggatgaagctcagaataagctgctctcttctcacccctcatctataactaagcagccatttctatggacccctttgccccttatttaagagagccttgggaaatacaaggcatggggggagggctgcacattcatgaacccatccgtatactcgttcacaatgtccacactgaacgctgagcactgtgcacttgcaaacagatgttgggctacacaggtcagattctgcccaggttagctgaaaggtgatcctaacctctgcctgcaaatggatgttggtgacattggactcagctagtgtctagcacattcctaatgactttgatatgaaaaaaaaatctcagaatgggagagaaatagaagaaattgttcttaattta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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