2024-05-03 23:36:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001399682 3756 bp mRNA linear ROD 18-JUN-2023 DEFINITION Rattus norvegicus transmembrane protein 167A (Tmem167a), mRNA. ACCESSION NM_001399682 XM_002728992 VERSION NM_001399682.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 3756) AUTHORS Wendler F, Gillingham AK, Sinka R, Rosa-Ferreira C, Gordon DE, Franch-Marro X, Peden AA, Vincent JP and Munro S. TITLE A genome-wide RNA interference screen identifies two novel components of the metazoan secretory pathway JOURNAL EMBO J 29 (2), 304-314 (2010) PUBMED 19942856 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000065.1. On Jan 12, 2022 this sequence version replaced XM_002728992.6. ##Evidence-Data-START## Transcript exon combination :: FQ213661.1, FQ220007.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00132261, SAMD00132262 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-60 JACYVU010000065.1 13703069-13703128 61-170 JACYVU010000065.1 13712428-13712537 171-205 JACYVU010000065.1 13714986-13715020 206-3756 JACYVU010000065.1 13718466-13722016 FEATURES Location/Qualifiers source 1..3756 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="2" /map="2q12" gene 1..3756 /gene="Tmem167a" /note="transmembrane protein 167A" /db_xref="GeneID:100359823" /db_xref="RGD:2323318" exon 1..60 /gene="Tmem167a" /inference="alignment:Splign:2.1.0" misc_feature 28..30 /gene="Tmem167a" /note="upstream in-frame stop codon" CDS 58..276 /gene="Tmem167a" /EC_number="3.6.5.4" /note="rCG44733-like; protein kish-A" /codon_start=1 /product="protein kish-A precursor" /protein_id="NP_001386611.1" /db_xref="GeneID:100359823" /db_xref="RGD:2323318" /translation="
MSAIFNFQSLLTVILLLICTCAYVRSLAPSILDRNKTGLLGIFWKCARIGERKSPYVAICCIVMAFSILFIQ"
sig_peptide 58..135 /gene="Tmem167a" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 85..189 /gene="Tmem167a" /note="Protein of unknown function (DUF1242); Region: DUF1242; pfam06842" /db_xref="CDD:429150" exon 61..170 /gene="Tmem167a" /inference="alignment:Splign:2.1.0" exon 171..205 /gene="Tmem167a" /inference="alignment:Splign:2.1.0" exon 206..3756 /gene="Tmem167a" /inference="alignment:Splign:2.1.0" ORIGIN
atcctcttccgccccggcccggaagggtgatgtggctggaccagcaccggcctcactatgtctgccattttcaattttcagagtctattgactgtaatcttgctgcttatatgtacgtgtgcttatgtgcgatccctggcacccagcatcctggacagaaataaaactggactattggggatattttggaagtgtgcccgaattggtgaacgcaagagtccttatgtcgccatatgctgtatagtgatggccttcagcatcctcttcatacagtagctttggaaactaccagcacgtgattgccatcagactgtacacaggacgtgcctccagaaaataacgggagaatggttaagcctcttgtctctgaacatggaatgagataaatttcgagatgctgttctctctttttatgctattggaccaatgagctgtatgaataattacgatgtaacagttaatacataggaacgtgattgcagccatcgacctcggttctctcactccagtattacactctacaaacgtcatcctgttacgtcaggaccgcttttcctaaggttctccaggcacgaagtagaaacccagtggccagttccacaggcttctttgactagggcttcaaaataatgtcttcacacagtgataccttctagcgactggcctatttttattgagaaaagaaaatggttctatttttgttgttactgttcttaggaattgcattcatatttaaacccttttgattgctaaccagagtacctctattcttggcaaattctgtactttattacaggtgtttaaaatagtttaaacaaaactgcatttctttaattagccttagagttgggcttctagtcacatatgtatggctgccatcctgtgaaggagagtatcttagaatgacaaaagcggcaagcagaacgatgactgaatatgcattatacatttttcgttctctgtggtattgagtcttccaaatagaacatccatgtagttacccaaatgcgttatttgtggtgtttttaatgcagcactttgcttctggtttatgtcctgtcagcgtgaactggaatctcttctgtaactttgtaggtgataaacatacctcatactgcttagtctgggtactgtgctctcagtgtatttcagctttcacacagattgggaatagacacaagtgaagcatacatattcaaaggatacgtgcaggtttgtgtccaacatttcttcaggtcagctgaaagtcactcactacttcaaagcaaagaggaagtaaatcctagctggaagcacttcatagcatttattaattaattactgggttcgactgctcctttaaaagttaaaaaaaaaaaaaagaaaaaagaaaacctttttcttagaagtgaggtttctataaaagccaagcgttggacttgaagacttattgtaaagcagtataccactgtgcagcccaaatgaccaccacagctagctaaaccaccagctttgaaatagtgctctaggccccatggattacagtctagactaaggtctaggaaagcttacttggtgtattttacgggttgcttgttttccaaaagatctttgcaatgtctatatctagttaaaactggtctaatttactttgaatgtgaaatcaggttatgataattactctactctgaaatttaccttgggcttagtattaggtcaaagattttcactgtgtcccaaaagtaggactctctcctctgcacattaagtagtcacctttcagggttcgatttttggttggccatctgttcatctccactaccaactgaagtttccagaaatgtggtcaacttctttcctaagttaacatacatctcataaaaatggagagaataaagagttgtctttagtttgacattttagacaatgtaggtggaaattagagaaagacatagttaacttgaagcttccaggtaacataagactttcatcattacgtagattctgggcattctgggcaggtatttctagtccccaccctcctgaacgtttacagtacaggcactttggaggtgtaggaaggctgcaaagacaaagatcttacaaagaaatgcaattagcatttttgatgtgcaaacagtgactcctgttttctaagccacagggtcctgtgggaggtgtgaagcccacagaatagttagctgtctttgttagtggggtgtggaggagcagtaaagcacgccaggcagctggcctttgcacagacggtaaacacagtgtaggtggcaatagggggcgagaggcactaagacccaggcctgacaatgttcagatgttcgccctagctactttgttggctctagaaccttgaagccatgtctccagatttgttttgttttgggttccccatttgtttcatctgtgtcattgacaggcaaggagacatgtattccttccaggtagtcttgcaagaggggcaaaaaggccttgtgttaaattggttttaatagttttaaaaagttaaaatatcaattcggtgtcttgctgatgtctttaatatgctggaaactaccatatatgtttcaattcaaggtgtttcctgctggggttagtaagaatatttataaatttataataaatttgtttatcttcttaataaaattagtcttgtaccatagggtgacacagattcccatacattaactttttcaagtttacaaagtcaaacaaatctgcctccatttgtgaaaattatttaatacttattaataatatttttttcaggaaacatgtacacaattggtatggcatgtgaccattgaaaataaatgagtagttgatctgtattcatagtgtccatgaaagatgaaatgaatgtctatgaagtataatgtgctaacacttattcttgagataatcccagcattctttaaaaaaaaaaaaaaggaagagtgaagatgcattgtgggtagaacgtctcagagaacatggattaaacggaacttgacagtgttgttttaaaaacacaattctgtgtttgggattatatgtcccttagtttgttgtggcacatgtgaagtatggcgtggccagacagatgttatatcctggaaagtcatgtattttacctacctcaaaactgaagctgagagtttgtttcccctcctgcctcacaaatccttcaggaggataataaaatctcccttggtttatgagcaagcaaagttgacaaagggatacactagtagattctcctgagacttttgtaaacattgtagaggcaactggccaatgaaggctgtgttttcagtaaaatcccatattctagctgctaaatgcagccccagctgttaaaacaaacatccatcccaaaagtgcactgtttacatttcctggacatacagaaaatatttctacttatcaagaacttaagctccacaaaaggctttgagaagttacccaacccttgaaatctgaaaacatgaatggaaaattcttaggggttgttcttctgttcctttggtatcatctagtaataataaatgttctcaaaatggtgctagcagtcaccgtggcaacagggagtcatgactaacttctgagaaataacttcatatcatttccactttgccctaaactagttcctaaataatctggaagagcatttcagtaccttttggagaaagaactataattcatgtttaaaagaggaggtaatcatcttagtctctggttagtttacgtgcctgctatgtaataaaaaatgaactgtcaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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