2024-05-06 12:31:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001164308 14960 bp mRNA linear ROD 31-DEC-2022 DEFINITION Rattus norvegicus plectin (Plec), transcript variant 11, mRNA. ACCESSION NM_001164308 VERSION NM_001164308.2 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 14960) AUTHORS Ni Y, Wang X, Yin X, Li Y, Liu X, Wang H, Liu X, Zhang J, Gao H, Shi B and Zhao S. TITLE Plectin protects podocytes from adriamycin-induced apoptosis and F-actin cytoskeletal disruption through the integrin alpha6beta4/FAK/p38 MAPK pathway JOURNAL J Cell Mol Med 22 (11), 5450-5467 (2018) PUBMED 30187999 REMARK GeneRIF: these findings indicated that plectin protects podocytes from ADR-induced apoptosis and F-actin cytoskeletal disruption by inhibiting integrin alpha6beta4/FAK/p38 pathway activation and that plectin may be a therapeutic target for podocyte injury-related glomerular diseases. REFERENCE 2 (bases 1 to 14960) AUTHORS Guo Z, Neilson LJ, Zhong H, Murray PS, Zanivan S and Zaidel-Bar R. TITLE E-cadherin interactome complexity and robustness resolved by quantitative proteomics JOURNAL Sci Signal 7 (354), rs7 (2014) PUBMED 25468996 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 14960) AUTHORS Zanivan S, Maione F, Hein MY, Hernandez-Fernaud JR, Ostasiewicz P, Giraudo E and Mann M. TITLE SILAC-based proteomics of human primary endothelial cell morphogenesis unveils tumor angiogenic markers JOURNAL Mol Cell Proteomics 12 (12), 3599-3611 (2013) PUBMED 23979707 REFERENCE 4 (bases 1 to 14960) AUTHORS Rezniczek GA, Walko G and Wiche G. TITLE Plectin gene defects lead to various forms of epidermolysis bullosa simplex JOURNAL Dermatol Clin 28 (1), 33-41 (2010) PUBMED 19945614 REMARK Review article Erratum:[Dermatol Clin. 2010 Apr;28(2):439-41] REFERENCE 5 (bases 1 to 14960) AUTHORS Zhang T, Haws P and Wu Q. TITLE Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation JOURNAL Genome Res 14 (1), 79-89 (2004) PUBMED 14672974 REFERENCE 6 (bases 1 to 14960) AUTHORS Rezniczek GA, Abrahamsberg C, Fuchs P, Spazierer D and Wiche G. TITLE Plectin 5'-transcript diversity: short alternative sequences determine stability of gene products, initiation of translation and subcellular localization of isoforms JOURNAL Hum Mol Genet 12 (23), 3181-3194 (2003) PUBMED 14559777 REFERENCE 7 (bases 1 to 14960) AUTHORS Fuchs P, Zorer M, Rezniczek GA, Spazierer D, Oehler S, Castanon MJ, Hauptmann R and Wiche G. TITLE Unusual 5' transcript complexity of plectin isoforms: novel tissue-specific exons modulate actin binding activity JOURNAL Hum Mol Genet 8 (13), 2461-2472 (1999) PUBMED 10556294 REFERENCE 8 (bases 1 to 14960) AUTHORS Elliott CE, Becker B, Oehler S, Castanon MJ, Hauptmann R and Wiche G. TITLE Plectin transcript diversity: identification and tissue distribution of variants with distinct first coding exons and rodless isoforms JOURNAL Genomics 42 (1), 115-125 (1997) PUBMED 9177781 REFERENCE 9 (bases 1 to 14960) AUTHORS Liu CG, Maercker C, Castanon MJ, Hauptmann R and Wiche G. TITLE Human plectin: organization of the gene, sequence analysis, and chromosome localization (8q24) JOURNAL Proc Natl Acad Sci U S A 93 (9), 4278-4283 (1996) PUBMED 8633055 REFERENCE 10 (bases 1 to 14960) AUTHORS Wiche G, Becker B, Luber K, Weitzer G, Castanon MJ, Hauptmann R, Stratowa C and Stewart M. TITLE Cloning and sequencing of rat plectin indicates a 466-kD polypeptide chain with a three-domain structure based on a central alpha-helical coiled coil JOURNAL J Cell Biol 114 (1), 83-99 (1991) PUBMED 2050743 COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff in collaboration with Gunther Rezniczek, Gerhard Wiche. The reference sequence was derived from JACYVU010000186.1. On Feb 10, 2021 this sequence version replaced NM_001164308.1. Summary: Plectin is a prominent member of an important family of structurally and in part functionally related proteins, termed plakins or cytolinkers, that are capable of interlinking different elements of the cytoskeleton. Plakins, with their multi-domain structure and enormous size, not only play crucial roles in maintaining cell and tissue integrity and orchestrating dynamic changes in cytoarchitecture and cell shape, but also serve as scaffolding platforms for the assembly, positioning, and regulation of signaling complexes (for reviews see PMID: 9701547, 11854008, and 17499243). Plectin is expressed as several protein isoforms in a wide range of cell types and tissues from a single gene located on chromosome 8 in humans (PMID: 8633055, 8698233). Until 2010, this locus was named plectin 1 (symbol PLEC1 in human; Plec1 in mouse and rat) and the gene product had been referred to as 'hemidesmosomal protein 1' or 'plectin 1, intermediate filament binding 500kDa'. These names were replaced by plectin. The plectin gene locus in mouse on chromosome 15 has been analyzed in detail (PMID: 10556294, 14559777), revealing a genomic exon-intron organization with well over 40 exons spanning over 62 kb and an unusual 5' transcript complexity of plectin isoforms. Eleven exons (1-1j) have been identified that alternatively splice directly into a common exon 2 which is the first exon to encode plectin's highly conserved actin binding domain (ABD). Three additional exons (-1, 0a, and 0) splice into an alternative first coding exon (1c), and two additional exons (2alpha and 3alpha) are optionally spliced within the exons encoding the acting binding domain (exons 2-8). Analysis of the human locus has identified eight of the eleven alternative 5' exons found in mouse and rat (PMID: 14672974); exons 1i, 1j and 1h have not been confirmed in human. Furthermore, isoforms lacking the central rod domain encoded by exon 31 have been detected in mouse (PMID:10556294), rat (PMID: 9177781), and human (PMID: 11441066, 10780662, 20052759). The short alternative amino-terminal sequences encoded by the different first exons direct the targeting of the various isoforms to distinct subcellular locations (PMID: 14559777). As the expression of specific plectin isoforms was found to be dependent on cell type (tissue) and stage of development (PMID: 10556294, 12542521, 17389230) it appears that each cell type (tissue) contains a unique set (proportion and composition) of plectin isoforms, as if custom-made for specific requirements of the particular cells. Concordantly, individual isoforms were found to carry out distinct and specific functions (PMID: 14559777, 12542521, 18541706). In 1996, a number of groups reported that patients suffering from epidermolysis bullosa simplex with muscular dystrophy (EBS-MD) lacked plectin expression in skin and muscle tissues due to defects in the plectin gene (PMID: 8698233, 8941634, 8636409, 8894687, 8696340). Two other subtypes of plectin-related EBS have been described: EBS-pyloric atresia (PA) and EBS-Ogna. For reviews of plectin-related diseases see PMID: 15810881, 19945614. Mutations in the plectin gene related to human diseases should be named based on the position in NM_000445 (human variant 1, isoform 1c), unless the mutation is located within one of the other alternative first exons, in which case the position in the respective Reference Sequence should be used. [provided by RefSeq, Aug 2011]. Transcript Variant: This variant (11), also known as 1a, differs in the 5' UTR and the 5' coding region compared to variant 1. The resulting protein (isoform 1a) contains a distinct N-terminus compared to isoform 1c. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMD00132261, SAMD00132262 [ECO:0000350] ##Evidence-Data-END## ##RefSeq-Attributes-START## gene product(s) localized to mito. :: PMID: 18541706, 17389230 ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-272 JACYVU010000186.1 1154683-1154954 c 273-334 JACYVU010000186.1 1154007-1154068 c 335-424 JACYVU010000186.1 1153608-1153697 c 425-502 JACYVU010000186.1 1152740-1152817 c 503-595 JACYVU010000186.1 1152541-1152633 c 596-762 JACYVU010000186.1 1151539-1151705 c 763-878 JACYVU010000186.1 1150779-1150894 c 879-985 JACYVU010000186.1 1150601-1150707 c 986-1105 JACYVU010000186.1 1150388-1150507 c 1106-1201 JACYVU010000186.1 1150220-1150315 c 1202-1329 JACYVU010000186.1 1149844-1149971 c 1330-1423 JACYVU010000186.1 1149483-1149576 c 1424-1578 JACYVU010000186.1 1148624-1148778 c 1579-1888 JACYVU010000186.1 1148207-1148516 c 1889-1966 JACYVU010000186.1 1148046-1148123 c 1967-2128 JACYVU010000186.1 1147811-1147972 c 2129-2233 JACYVU010000186.1 1147533-1147637 c 2234-2329 JACYVU010000186.1 1147327-1147422 c 2330-2455 JACYVU010000186.1 1146987-1147112 c 2456-2608 JACYVU010000186.1 1145996-1146148 c 2609-2763 JACYVU010000186.1 1145747-1145901 c 2764-2890 JACYVU010000186.1 1145528-1145654 c 2891-3074 JACYVU010000186.1 1145241-1145424 c 3075-3232 JACYVU010000186.1 1145003-1145160 c 3233-3411 JACYVU010000186.1 1144733-1144911 c 3412-3550 JACYVU010000186.1 1143473-1143611 c 3551-3907 JACYVU010000186.1 1143029-1143385 c 3908-3991 JACYVU010000186.1 1142873-1142956 c 3992-4096 JACYVU010000186.1 1142597-1142701 c 4097-4195 JACYVU010000186.1 1142407-1142505 c 4196-7576 JACYVU010000186.1 1138026-1141406 c 7577-14960 JACYVU010000186.1 1130507-1137890 c FEATURES Location/Qualifiers source 1..14960 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="7" /map="7q34" gene 1..14960 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="plectin" /db_xref="GeneID:64204" /db_xref="RGD:621649" exon 1..272 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" misc_feature 119..121 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="upstream in-frame stop codon" CDS 161..13795 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="isoform 1a is encoded by transcript variant 11; plectin 1" /codon_start=1 /product="plectin isoform 1a" /protein_id="NP_001157780.1" /db_xref="GeneID:64204" /db_xref="RGD:621649" /translation="
MSQQRLRVPEPEGLGSKRTSSEDNLYLAVLRASEGKKDERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVPGAQDGVRANELQLRWQEYRELVLLLLQWIRHHTAAFEERKFPSSFEEIEILWCQFLKFKETELPAKEADKNRSKGIYQSLEGAVQAGQLKIPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLECLQRIVSKLQMEAGLCEEQLNQADSLLQSDIRLLASGKAAQRAGEVERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHERLVAIRTEYNLRLKAGVGAPVTQVTLQSTQRRPELEDSTLRYLHDLLAWVEENQRRIDGAEWGVDLPSVEAQLGSHRGMHQSIEEFRAKIERARNDESQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHGFVAAATKELMWLNEKEEEEVGFDWSDRNTNMAAKKESYSALMRELEMKEKKIKEIQNTGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENTAYFQFFSDVREAEEQLQKLQETLRRKYSCDRSITVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAIVQLKPRNPAHPVRGHVPLLAVCDYKQVEVTVHKGDQCQLVGPAQPFHWKVLGGSSSEAAVPSVCFLVPPPNQEAQEAVARLEAQHQALVTLWHQLHVDMKSLLAWQSLNRDIQLIRSWSLVTFRTLKPEEQRQALRNLELHYQAFLRDSQDAGGFGPEDRLVAEREYGSCSRHYQQLLQSLEQGEQEESRCQRCISELKDIRLQLEACETRTVHRLRLPLDKDPARECAQRIAEQQKAQAEVEGLGKGVARLSAEAEKVLALPEPSPAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRSTQGAEEVLKTHEEHLKEAQAVPATLQELEVTKASLKKLRAQAEAQQPVFNTLRDELRGAQEVGERLQQRHGERDVEVERWRERVTQLLERWQAVLAQTDVRQRELEQLGRQLRYYRESADPLSSWLQDAKSRQEQIQAVPIANSQAAREQLRQEKALLEEIERHGEKVEECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTRYSELTTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAELEARELQRRMQEEVTRREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQVEAAERSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREKQRALQALDELKLQAEEAERRLRQAEAERARQVQVALETAQRSAEVELQSKRASFAEKTAQLERTLQEEHVTVTQLREEAERRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQKSLAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAERVLTEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKASFEKAAAGKAELELELGRIRSNAEDTMRSKELAEQEAARQRQLAAEEEQRRREAEERVQRSLAAEEEAARQRKVALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQQTLQQEQNMLERLRSEAEAARRAAEEAEEAREQAEREAAQSRKQVEEAERLKQSAEEQAQAQAQAQAAAEKLRKEAEQEAARRAQAEQAALKQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEETDHQKSILDEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQRTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVTLVQTLEIQRQQSDQDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQQEQILQETQALQKSFLSEKDSLLQRERFIEQEKAKLEQLFQDEVAKAKQLQEEQQRQQQQMEQEKQELVASMEEARRRQREAEEGVRRKQEELQRLEQQRQQQEKLLAEENQRLRERLQRLEEEHRAALAHSEEIATSQAAATKALPNGRDALDGPSMEAEPEYTFEGLRQKVPAQQLQEAGILSMEELQRLTQGHTTVAELTQREDVHRYLKGGSSIAGLLLKPTNEKLSVYTALQRQLLSPGTALILLEAQAASGFLLDPVRNRRLTVNEAVKEGVVGPELHHKLLSAERAVTGYKDPYTGEQISLFQAMKKDLIVRDHGIRLLEAQIATGGIIDPVHSHRVPVDVAYQRGYFDEEMNRVLADPSDDTKGFFDPNTHENLTYLQLLERCVEDPETGLRLLPLTDKAAKGGELVYTDTEARDVFEKATVSAPFGKFQGKTVTIWEIINSEYFTAEQRRDLLRQFRTGRITVEKIIKIVITVVEEHERKGQLCFEGLRALVPAAELLDSGVISHEVYQQLQRGERSVREVAEADEVRQALRGTSVIAGVWLEEAGQKLSIYEALRRDLLQPEVAVALLEAQAGTGHIIDPATSARLTVDEAVRAGLVGPEMHEKLLSAEKAVTGYRDPYSGQSVSLFQALKKGLIPREQGLRLLDAQLSTGGIVDPSKSHRVPLDVAYARGYLDKETNRALTSPRDDARVYLDPSTREPVTYSQLQQRCRSDQLTGLSLLPLSEKAVRARQEEVYSELQARETLEKAKVEVPVGGFKGRALTVWELISSEYFTEEQRQELLRQFRTGKVTVEKVIKILITIVEEVETQRQERLSFSGLRAPVPASELLASKILSRTQFEQLKDGKTSVKDLSEVGSVRTLLQGSGCLAGIYLEDSKEKVTIYEAMRRGLLRPSTATLLLEAQAATGFLVDPVRNQRLYVHEAVKAGVVGPELHEKLLSAEKAVTGYKDPYSGSTISLFQAMKKGLVLRDHAIRLLEAQIATGGIIDPVHSHRLPVDVAYQRGYFDEEMNRVLADPSDDTKGFFDPNTHENLTYLQLLERCVEDPETGLRLLPLRGAEKTEVVETTQVYTEEETRRAFEETQIDIPGGGSHGGSSMSLWEVMQSDMIPEDQRARLMADFQAGRVTKERMIIIIIEIIEKTEIIRQQNLASYDYVRRRLTAEDLYEARIISLETYNLFREGTKSLREVLEMESAWRYLYGTGSVAGVYLPGSRQTLTIYQALKKGLLSAEVARLLLEAQAATGFLLDPVKGERLTVDEAVRKGLVGPELHDRLLSAERAVTGYRDPYTEQPISLFQAMKKELIPAEEALRLLDAQLATGGIVDPRLGFHLPLEVAYQRGYLNKDTHDQLSEPSEVRSYVDPSTDERLSYTQLLKRCRRDDNSGQMLLPLSDARKLTFRGLRKQITVEELVRSQVMDEATALQLQEGLTSIEEVTKNLQKFLEGTSCIAGVFVDATKERLSVYQAMKKGIIRPGTAFELLEAQAATGYVIDPIKGLKLTVEEAVRMGIVGPEFKDKLLSAERAVTGYKDPYSGKLISLFQAMKKGLILKDHGIRLLEAQIATGGIIDPEESHRLPVEVAYKRGLFDEEMNEILTDPSDDTKGFFDPNTEENLTYLQLMERCITDPQTGLCLLPLKEKKRERKTSSKSSVRKRRVVIVDPETGKEMSVYEAYRKGLIDHQTYLELSEQECEWEEITISSSDGVVKSMIIDRRSGRQYDIDDAITKNLIDRSALDQYRAGTLSITEFADMLSGNAGGFRSRSSSVGSSSSYPISSAVPRTQLASWSDPTEETGPVAGILDTETLEKVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPSTGERFPVTEAVNKGLVDKIMVDRINLAQKAFCGFEDPRTKTKMSAAQALKKGWLYYEAGQRFLEVQYLTGGLIEPDTPGRVSLDEALQRGTVDARTAQKLRDVSAYSKYLTCPKTKLKISYKDALDRSMVEEGTGLRLLEAAAQSSKGYYSPYSVSGSGSTAGSRTGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSGYGRRYASGPSASLGGPESAVA"
misc_feature 281..595 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family; Region: CH_PLEC-like_rpt1; cd21188" /db_xref="CDD:409037" misc_feature order(290..292,302..304,452..454,458..463,470..475, 479..481,506..532,545..547,551..556,560..565,572..577, 584..586) /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409037" misc_feature 632..949 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="second calponin homology (CH) domain found in plectin and similar proteins; Region: CH_PLEC_rpt2; cd21238" /db_xref="CDD:409087" misc_feature order(638..640,650..652,800..802,806..811,818..823, 827..829,854..880,899..901,905..910,914..919,926..931, 938..940) /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409087" misc_feature order(722..724,731..733,791..802,806..811) /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:409087" misc_feature 2003..2539 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 2312..2329 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 2528..2728 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="SH3 domain; Region: SH3_10; pfam17902" /db_xref="CDD:407754" misc_feature 2831..3064 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Spectrin like domain; Region: Spectrin_like; pfam18373" /db_xref="CDD:436447" misc_feature <3227..4837 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; Region: SbcC; COG0419" /db_xref="CDD:223496" misc_feature <4184..6304 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature <5315..7858 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature 8222..8338 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 8336..8452 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 8447..8557 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 8564..8680 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 9200..9313 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 9320..9436 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 9431..9541 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 9548..9664 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 10199..10315 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 10313..10429 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 10424..10519 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 10541..10657 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 11201..11311 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 11318..11434 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 11429..11539 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 11546..11662 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 11927..12040 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 12047..12163 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 12275..12391 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature <12578..12664 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 12974..13075 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 13082..13198 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 13310..13426 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" exon 273..334 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 335..424 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 425..502 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 503..595 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 596..762 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 763..878 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 879..985 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 986..1105 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 1106..1201 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 1202..1329 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 1330..1423 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 1424..1578 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 1579..1888 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 1889..1966 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 1967..2128 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 2129..2233 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 2234..2329 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 2330..2455 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 2456..2608 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 2609..2763 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 2764..2890 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 2891..3074 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 3075..3232 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 3233..3411 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 3412..3550 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 3551..3907 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 3908..3991 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 3992..4096 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 4097..4195 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 4196..7576 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" exon 7577..14960 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /inference="alignment:Splign:2.1.0" ORIGIN
cacaggaacttcagtgtgagctgaacctctgctgagttactgtccagagcggccggcagccttcagcagcctgtgtaccaccgcacaaggctgtgtagaccagacagagcacagcacctgagagccgagggacagtgtgactagggggaggggcagcaccatgtctcagcaacggctccgtgtgcccgagcctgaaggcctgggtagcaagagaaccagctcagaggacaacctctacctggctgtgctcagggcctccgagggcaagaaagatgaacgagaccgtgtgcagaagaaaactttcaccaagtgggtcaataaacaccttatcaaggctcaaaggcacatcagtgacctgtatgaagacctccgtgatggccacaacctcatctccctgctggaagtcctctcaggagacagcctgccccgagagaaggggaggatgcgtttccacaagctgcaaaacgttcagattgccctggactatctccgacatcggcaggtgaagttggtgaacatcagaaatgatgacatcgccgatggcaaccccaagctgaccctgggcctgatctggacaatcatcctgcacttccagatctcagacattcaggtgagcggccagtccgaggacatgacagccaaggagaagctgctgctgtggtctcagcgtatggtagagggctaccaaggcctgcgctgtgacaacttcaccaccagctggcgcgacggccggctcttcaatgctatcatccacaggcacaagcccatgctcatagacatgaataaagtgtaccgacagaccaacctggagaacctagaccaggccttctccgtggcagagcgggacctgggagttaccaggctcctggacccagaagatgtggatgtccctcagcctgatgagaagtccatcatcacctacgtttcatccctgtatgatgccatgccccgtgtgccgggcgcacaggatggagtgagggccaatgagctgcagcttcgttggcaagagtaccgggagcttgtgctgctgctgctacagtggatccggcaccacaccgctgcttttgaggagcgcaagttcccctccagctttgaggagattgagatcctatggtgccagtttctgaagttcaaggagacagaacttcctgccaaggaggcagacaagaaccggtccaaaggcatctaccagtctttggagggagcagtacaagcaggccagctcaagattccccctggctaccacccgctagacgtggaaaaggagtggggcaagctgcacgtggccatcctggagcgggagaagcaactccggagcgagtttgagaggctggagtgtcttcagcgcattgtgagcaagctacagatggaggctgggctatgtgaggagcagctgaaccaggccgattccctactgcagtcggatattcggctgctggcctcaggcaaggcggcacagcgggctggggaagtggagagagacctggacaaggctgatggtatgatccggctgttgttcaatgatgtgcagacccttaaagatgggcggcatccacagggtgaacagatgtaccggagggtgtatcgtctgcatgagcgcctggtagccatccgcactgaatacaacctccggctgaaggcaggggtgggtgcccctgtgacccaggtgaccctgcagagcacacagaggcgcccagagctagaggactccacactgcgttacctgcacgacctgctggcatgggtggaggagaaccagcgtcgaatagacggtgctgagtggggcgtggacttgcccagtgtagaggcacagctgggcagccaccgaggcatgcatcagtctattgaggaattccgggccaagatcgagcgggctcggaatgatgagagccagctctcccctgccacccgaggtgcctaccgagactgcctgggccgcctggacctgcagtatgcaaagctgctgaactcctccaaggcccgcctccggtccctggagagcttgcatgggtttgtggcggcagctaccaaggagctgatgtggctgaatgagaaggaagaggaagaagtgggctttgattggagtgaccgcaacaccaacatggctgccaagaaagaaagttactcggccctgatgcgtgagctggagatgaaggaaaagaaaattaaggagatccagaacacgggggacaggttgctgcgggaagaccatcctgcccggcccacagtggagtccttccaggctgccctgcagacacagtggagctggatgctgcagctgtgttgctgcattgaagcgcacttgaaagagaacacagcctacttccagttcttctcagatgttcgggaggctgaggaacagttgcagaaactacaggagacgttacgcaggaagtacagctgtgaccgctccatcactgtcacaaggcttgaggacctgctgcaggatgcccaggatgagaaggagcaactgaatgagtacaaagggcacctctcaggcctggccaagcgggccaaggctattgtgcagctgaagccacgcaaccctgcccaccctgtgcggggtcacgtgcccctgctagctgtgtgtgactacaagcaggtggaggtgactgtgcacaagggtgaccaatgccagctggtgggccctgcccagccgttccactggaaggtgctcggtggttccagcagtgaggctgccgtgccttctgtgtgctttcttgtgccgccacccaaccaggaggcccaggaagctgttgctaggctggaggcccagcatcaggccctggttactctgtggcaccagcttcacgtggacatgaagagtcttctggcatggcagagcctcaatcgtgacatacagctcatccggtcctggtccctagtcacgttccgcacgctgaagcccgaggagcagcggcaagctctgcgcaacctggagttgcactaccaggccttccttcgagacagccaggacgctggtggctttgggcccgaggaccggctggtggcagagcgcgaatatggatcttgtagtcgccactaccagcagctgctacaaagcctggagcagggtgagcaggaggagtctcgctgtcagcgatgcatctcggagctcaaggacattcggctgcaactggaggcctgtgagactcggactgtgcaccgtctgcggctgccactggataaagaccccgcacgggagtgtgcccagcgcatcgctgagcaacagaaagcacaggctgaggtggaggggctgggcaagggagttgcccggctgtctgctgaggctgagaaagttctggccttgccagagccgtcacctgctgcaccaactctgcgctcggagttggaattgaccctgggcaagctggaacaggtcagaagcctgtctgccatctacttggagaaactcaagaccatcagcttggtaattcgcagtacccagggggctgaggaggtgcttaaaacacacgaggagcacctgaaggaggcccaggccgtgcctgccacactccaagagctcgaagtcaccaaggcttcactaaagaagctgcgggcccaggcggaggcacagcagcctgtattcaacaccctacgagatgagctgaggggggcacaggaagttggtgaacggctacagcagcggcatggtgagcgggacgtggaagtagagcgctggcgagaacgtgtcactcagttgctggagcgctggcaggctgtgctagcccagactgatgtgcggcagcgggagcttgaacagctgggccgccaacttcgctactaccgtgaaagtgcggatccgctgagctcctggctgcaggatgccaagagccggcaagagcagatccaggctgtgccaatagccaacagtcaggctgcacgagaacagctgcgccaggagaaggccctgctggaggagattgagcgccatggtgagaaggttgaggagtgccagaagtttgctaagcagtacatcaatgcaatcaaggactatgagctccagctgatcacctacaaggctcagcttgaacctgtggcctcccccgccaagaagcccaaggttcagtctggatcggagagcgtcatccaggagtacgtggatctgcgtacacgctacagtgagctgaccacactcacgagtcagtacatcaagttcatcagtgagacactgcgccgcatggaagaggaagagcggctggctgagcaacagcgggcagaggagcgggagcgcctggccgaggtggaggccgcgctggagaagcagcggcagctggctgaggcccatgcccaggccaaggcacaggccgagctggaggcacgagaactgcagcggcgcatgcaggaggaggtgacgcggcgcgaggaggcggcggtggacgcacagcaacagaagcgcagcatccaagaggagctgcagcatctgcggcaaagctcagaggcagagatccaggccaaggcccagcaggtggaggctgcagagcgcagccgcatgcgcattgaggaagagatccgcgtagtccgtctgcagctagagacaactgagcgtcagcgtggaggggcggaggatgagctgcaggctctgcgtgcacgggctgaggaggcagaagcacagaagcggcaggctcaggaggaagccgagcgcttgcggaggcaggtgcaggatgagagccaacgcaaacggcaggcggaggccgagctggccctgcgtgtgaaggcagaagcggaggcagcgcgagagaagcagcgggccctgcaggctctggatgaactgaaactgcaggccgaggaggccgaacggcggctgcgccaagccgaggcagagagggctcgccaagtgcaggtagccctggagacagcgcagcgtagtgcagaagtggagctgcagagcaagcgtgcgtcctttgcagagaagaccgcacagttggagcgcacgctgcaggaagagcacgtgacagtgacacagctgcgggaggaggcggaacggcgggcacagcagc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//
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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