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Previous release (v1)
2024-04-29 15:28:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001164303 14826 bp mRNA linear ROD 31-DEC-2022
DEFINITION Rattus norvegicus plectin (Plec), transcript variant 7, mRNA.
ACCESSION NM_001164303
VERSION NM_001164303.2
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 14826)
AUTHORS Ni Y, Wang X, Yin X, Li Y, Liu X, Wang H, Liu X, Zhang J, Gao H,
Shi B and Zhao S.
TITLE Plectin protects podocytes from adriamycin-induced apoptosis and
F-actin cytoskeletal disruption through the integrin
alpha6beta4/FAK/p38 MAPK pathway
JOURNAL J Cell Mol Med 22 (11), 5450-5467 (2018)
PUBMED 30187999
REMARK GeneRIF: these findings indicated that plectin protects podocytes
from ADR-induced apoptosis and F-actin cytoskeletal disruption by
inhibiting integrin alpha6beta4/FAK/p38 pathway activation and that
plectin may be a therapeutic target for podocyte injury-related
glomerular diseases.
REFERENCE 2 (bases 1 to 14826)
AUTHORS Guo Z, Neilson LJ, Zhong H, Murray PS, Zanivan S and Zaidel-Bar R.
TITLE E-cadherin interactome complexity and robustness resolved by
quantitative proteomics
JOURNAL Sci Signal 7 (354), rs7 (2014)
PUBMED 25468996
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 14826)
AUTHORS Zanivan S, Maione F, Hein MY, Hernandez-Fernaud JR, Ostasiewicz P,
Giraudo E and Mann M.
TITLE SILAC-based proteomics of human primary endothelial cell
morphogenesis unveils tumor angiogenic markers
JOURNAL Mol Cell Proteomics 12 (12), 3599-3611 (2013)
PUBMED 23979707
REFERENCE 4 (bases 1 to 14826)
AUTHORS Rezniczek GA, Walko G and Wiche G.
TITLE Plectin gene defects lead to various forms of epidermolysis bullosa
simplex
JOURNAL Dermatol Clin 28 (1), 33-41 (2010)
PUBMED 19945614
REMARK Review article
Erratum:[Dermatol Clin. 2010 Apr;28(2):439-41]
REFERENCE 5 (bases 1 to 14826)
AUTHORS Zhang T, Haws P and Wu Q.
TITLE Multiple variable first exons: a mechanism for cell- and
tissue-specific gene regulation
JOURNAL Genome Res 14 (1), 79-89 (2004)
PUBMED 14672974
REFERENCE 6 (bases 1 to 14826)
AUTHORS Rezniczek GA, Abrahamsberg C, Fuchs P, Spazierer D and Wiche G.
TITLE Plectin 5'-transcript diversity: short alternative sequences
determine stability of gene products, initiation of translation and
subcellular localization of isoforms
JOURNAL Hum Mol Genet 12 (23), 3181-3194 (2003)
PUBMED 14559777
REFERENCE 7 (bases 1 to 14826)
AUTHORS Fuchs P, Zorer M, Rezniczek GA, Spazierer D, Oehler S, Castanon MJ,
Hauptmann R and Wiche G.
TITLE Unusual 5' transcript complexity of plectin isoforms: novel
tissue-specific exons modulate actin binding activity
JOURNAL Hum Mol Genet 8 (13), 2461-2472 (1999)
PUBMED 10556294
REFERENCE 8 (bases 1 to 14826)
AUTHORS Elliott CE, Becker B, Oehler S, Castanon MJ, Hauptmann R and Wiche
G.
TITLE Plectin transcript diversity: identification and tissue
distribution of variants with distinct first coding exons and
rodless isoforms
JOURNAL Genomics 42 (1), 115-125 (1997)
PUBMED 9177781
REFERENCE 9 (bases 1 to 14826)
AUTHORS Liu CG, Maercker C, Castanon MJ, Hauptmann R and Wiche G.
TITLE Human plectin: organization of the gene, sequence analysis, and
chromosome localization (8q24)
JOURNAL Proc Natl Acad Sci U S A 93 (9), 4278-4283 (1996)
PUBMED 8633055
REFERENCE 10 (bases 1 to 14826)
AUTHORS Wiche G, Becker B, Luber K, Weitzer G, Castanon MJ, Hauptmann R,
Stratowa C and Stewart M.
TITLE Cloning and sequencing of rat plectin indicates a 466-kD
polypeptide chain with a three-domain structure based on a central
alpha-helical coiled coil
JOURNAL J Cell Biol 114 (1), 83-99 (1991)
PUBMED 2050743
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff in
collaboration with Gunther Rezniczek, Gerhard Wiche. The reference
sequence was derived from JACYVU010000186.1.
On Feb 10, 2021 this sequence version replaced NM_001164303.1.
Summary: Plectin is a prominent member of an important family of
structurally and in part functionally related proteins, termed
plakins or cytolinkers, that are capable of interlinking different
elements of the cytoskeleton. Plakins, with their multi-domain
structure and enormous size, not only play crucial roles in
maintaining cell and tissue integrity and orchestrating dynamic
changes in cytoarchitecture and cell shape, but also serve as
scaffolding platforms for the assembly, positioning, and regulation
of signaling complexes (for reviews see PMID: 9701547, 11854008,
and 17499243). Plectin is expressed as several protein isoforms in
a wide range of cell types and tissues from a single gene located
on chromosome 8 in humans (PMID: 8633055, 8698233). Until 2010,
this locus was named plectin 1 (symbol PLEC1 in human; Plec1 in
mouse and rat) and the gene product had been referred to as
'hemidesmosomal protein 1' or 'plectin 1, intermediate filament
binding 500kDa'. These names were replaced by plectin. The plectin
gene locus in mouse on chromosome 15 has been analyzed in detail
(PMID: 10556294, 14559777), revealing a genomic exon-intron
organization with well over 40 exons spanning over 62 kb and an
unusual 5' transcript complexity of plectin isoforms. Eleven exons
(1-1j) have been identified that alternatively splice directly into
a common exon 2 which is the first exon to encode plectin's highly
conserved actin binding domain (ABD). Three additional exons (-1,
0a, and 0) splice into an alternative first coding exon (1c), and
two additional exons (2alpha and 3alpha) are optionally spliced
within the exons encoding the acting binding domain (exons 2-8).
Analysis of the human locus has identified eight of the eleven
alternative 5' exons found in mouse and rat (PMID: 14672974); exons
1i, 1j and 1h have not been confirmed in human. Furthermore,
isoforms lacking the central rod domain encoded by exon 31 have
been detected in mouse (PMID:10556294), rat (PMID: 9177781), and
human (PMID: 11441066, 10780662, 20052759). The short alternative
amino-terminal sequences encoded by the different first exons
direct the targeting of the various isoforms to distinct
subcellular locations (PMID: 14559777). As the expression of
specific plectin isoforms was found to be dependent on cell type
(tissue) and stage of development (PMID: 10556294, 12542521,
17389230) it appears that each cell type (tissue) contains a unique
set (proportion and composition) of plectin isoforms, as if
custom-made for specific requirements of the particular cells.
Concordantly, individual isoforms were found to carry out distinct
and specific functions (PMID: 14559777, 12542521, 18541706). In
1996, a number of groups reported that patients suffering from
epidermolysis bullosa simplex with muscular dystrophy (EBS-MD)
lacked plectin expression in skin and muscle tissues due to defects
in the plectin gene (PMID: 8698233, 8941634, 8636409, 8894687,
8696340). Two other subtypes of plectin-related EBS have been
described: EBS-pyloric atresia (PA) and EBS-Ogna. For reviews of
plectin-related diseases see PMID: 15810881, 19945614. Mutations in
the plectin gene related to human diseases should be named based on
the position in NM_000445 (human variant 1, isoform 1c), unless the
mutation is located within one of the other alternative first
exons, in which case the position in the respective Reference
Sequence should be used. [provided by RefSeq, Aug 2011].
Transcript Variant: This variant (7), also known as 1d, differs in
the 5' UTR and the 5' coding region compared to variant 1. The
resulting protein (isoform 1d) contains a distinct N-terminus
compared to isoform 1c.
Sequence Note: The RefSeq transcript and protein were derived from
genomic sequence to make the sequence consistent with the reference
genome assembly. The genomic coordinates used for the transcript
record were based on alignments.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
RNAseq introns :: single sample supports all introns SAMEA5760383
[ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
gene product(s) localized to mito. :: PMID: 18541706, 17389230
##RefSeq-Attributes-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-138 JACYVU010000186.1 1159843-1159980 c
139-200 JACYVU010000186.1 1154007-1154068 c
201-290 JACYVU010000186.1 1153608-1153697 c
291-368 JACYVU010000186.1 1152740-1152817 c
369-461 JACYVU010000186.1 1152541-1152633 c
462-628 JACYVU010000186.1 1151539-1151705 c
629-744 JACYVU010000186.1 1150779-1150894 c
745-851 JACYVU010000186.1 1150601-1150707 c
852-971 JACYVU010000186.1 1150388-1150507 c
972-1067 JACYVU010000186.1 1150220-1150315 c
1068-1195 JACYVU010000186.1 1149844-1149971 c
1196-1289 JACYVU010000186.1 1149483-1149576 c
1290-1444 JACYVU010000186.1 1148624-1148778 c
1445-1754 JACYVU010000186.1 1148207-1148516 c
1755-1832 JACYVU010000186.1 1148046-1148123 c
1833-1994 JACYVU010000186.1 1147811-1147972 c
1995-2099 JACYVU010000186.1 1147533-1147637 c
2100-2195 JACYVU010000186.1 1147327-1147422 c
2196-2321 JACYVU010000186.1 1146987-1147112 c
2322-2474 JACYVU010000186.1 1145996-1146148 c
2475-2629 JACYVU010000186.1 1145747-1145901 c
2630-2756 JACYVU010000186.1 1145528-1145654 c
2757-2940 JACYVU010000186.1 1145241-1145424 c
2941-3098 JACYVU010000186.1 1145003-1145160 c
3099-3277 JACYVU010000186.1 1144733-1144911 c
3278-3416 JACYVU010000186.1 1143473-1143611 c
3417-3773 JACYVU010000186.1 1143029-1143385 c
3774-3857 JACYVU010000186.1 1142873-1142956 c
3858-3962 JACYVU010000186.1 1142597-1142701 c
3963-4061 JACYVU010000186.1 1142407-1142505 c
4062-7442 JACYVU010000186.1 1138026-1141406 c
7443-14826 JACYVU010000186.1 1130507-1137890 c
FEATURES Location/Qualifiers
source 1..14826
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
/chromosome="7"
/map="7q34"
gene 1..14826
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="plectin"
/db_xref="GeneID:64204"
/db_xref="RGD:621649"
exon 1..138
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
misc_feature 60..62
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="upstream in-frame stop codon"
CDS 123..13661
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="isoform 1d is encoded by transcript variant 7;
plectin 1"
/codon_start=1
/product="plectin isoform 1d"
/protein_id="NP_001157775.1"
/db_xref="GeneID:64204"
/db_xref="RGD:621649"
/translation="
MKIVPDERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVPGAQDGVRANELQLRWQEYRELVLLLLQWIRHHTAAFEERKFPSSFEEIEILWCQFLKFKETELPAKEADKNRSKGIYQSLEGAVQAGQLKIPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLECLQRIVSKLQMEAGLCEEQLNQADSLLQSDIRLLASGKAAQRAGEVERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHERLVAIRTEYNLRLKAGVGAPVTQVTLQSTQRRPELEDSTLRYLHDLLAWVEENQRRIDGAEWGVDLPSVEAQLGSHRGMHQSIEEFRAKIERARNDESQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHGFVAAATKELMWLNEKEEEEVGFDWSDRNTNMAAKKESYSALMRELEMKEKKIKEIQNTGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENTAYFQFFSDVREAEEQLQKLQETLRRKYSCDRSITVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAIVQLKPRNPAHPVRGHVPLLAVCDYKQVEVTVHKGDQCQLVGPAQPFHWKVLGGSSSEAAVPSVCFLVPPPNQEAQEAVARLEAQHQALVTLWHQLHVDMKSLLAWQSLNRDIQLIRSWSLVTFRTLKPEEQRQALRNLELHYQAFLRDSQDAGGFGPEDRLVAEREYGSCSRHYQQLLQSLEQGEQEESRCQRCISELKDIRLQLEACETRTVHRLRLPLDKDPARECAQRIAEQQKAQAEVEGLGKGVARLSAEAEKVLALPEPSPAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRSTQGAEEVLKTHEEHLKEAQAVPATLQELEVTKASLKKLRAQAEAQQPVFNTLRDELRGAQEVGERLQQRHGERDVEVERWRERVTQLLERWQAVLAQTDVRQRELEQLGRQLRYYRESADPLSSWLQDAKSRQEQIQAVPIANSQAAREQLRQEKALLEEIERHGEKVEECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTRYSELTTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAELEARELQRRMQEEVTRREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQVEAAERSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREKQRALQALDELKLQAEEAERRLRQAEAERARQVQVALETAQRSAEVELQSKRASFAEKTAQLERTLQEEHVTVTQLREEAERRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQKSLAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAERVLTEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKASFEKAAAGKAELELELGRIRSNAEDTMRSKELAEQEAARQRQLAAEEEQRRREAEERVQRSLAAEEEAARQRKVALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQQTLQQEQNMLERLRSEAEAARRAAEEAEEAREQAEREAAQSRKQVEEAERLKQSAEEQAQAQAQAQAAAEKLRKEAEQEAARRAQAEQAALKQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEETDHQKSILDEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQRTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVTLVQTLEIQRQQSDQDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQQEQILQETQALQKSFLSEKDSLLQRERFIEQEKAKLEQLFQDEVAKAKQLQEEQQRQQQQMEQEKQELVASMEEARRRQREAEEGVRRKQEELQRLEQQRQQQEKLLAEENQRLRERLQRLEEEHRAALAHSEEIATSQAAATKALPNGRDALDGPSMEAEPEYTFEGLRQKVPAQQLQEAGILSMEELQRLTQGHTTVAELTQREDVHRYLKGGSSIAGLLLKPTNEKLSVYTALQRQLLSPGTALILLEAQAASGFLLDPVRNRRLTVNEAVKEGVVGPELHHKLLSAERAVTGYKDPYTGEQISLFQAMKKDLIVRDHGIRLLEAQIATGGIIDPVHSHRVPVDVAYQRGYFDEEMNRVLADPSDDTKGFFDPNTHENLTYLQLLERCVEDPETGLRLLPLTDKAAKGGELVYTDTEARDVFEKATVSAPFGKFQGKTVTIWEIINSEYFTAEQRRDLLRQFRTGRITVEKIIKIVITVVEEHERKGQLCFEGLRALVPAAELLDSGVISHEVYQQLQRGERSVREVAEADEVRQALRGTSVIAGVWLEEAGQKLSIYEALRRDLLQPEVAVALLEAQAGTGHIIDPATSARLTVDEAVRAGLVGPEMHEKLLSAEKAVTGYRDPYSGQSVSLFQALKKGLIPREQGLRLLDAQLSTGGIVDPSKSHRVPLDVAYARGYLDKETNRALTSPRDDARVYLDPSTREPVTYSQLQQRCRSDQLTGLSLLPLSEKAVRARQEEVYSELQARETLEKAKVEVPVGGFKGRALTVWELISSEYFTEEQRQELLRQFRTGKVTVEKVIKILITIVEEVETQRQERLSFSGLRAPVPASELLASKILSRTQFEQLKDGKTSVKDLSEVGSVRTLLQGSGCLAGIYLEDSKEKVTIYEAMRRGLLRPSTATLLLEAQAATGFLVDPVRNQRLYVHEAVKAGVVGPELHEKLLSAEKAVTGYKDPYSGSTISLFQAMKKGLVLRDHAIRLLEAQIATGGIIDPVHSHRLPVDVAYQRGYFDEEMNRVLADPSDDTKGFFDPNTHENLTYLQLLERCVEDPETGLRLLPLRGAEKTEVVETTQVYTEEETRRAFEETQIDIPGGGSHGGSSMSLWEVMQSDMIPEDQRARLMADFQAGRVTKERMIIIIIEIIEKTEIIRQQNLASYDYVRRRLTAEDLYEARIISLETYNLFREGTKSLREVLEMESAWRYLYGTGSVAGVYLPGSRQTLTIYQALKKGLLSAEVARLLLEAQAATGFLLDPVKGERLTVDEAVRKGLVGPELHDRLLSAERAVTGYRDPYTEQPISLFQAMKKELIPAEEALRLLDAQLATGGIVDPRLGFHLPLEVAYQRGYLNKDTHDQLSEPSEVRSYVDPSTDERLSYTQLLKRCRRDDNSGQMLLPLSDARKLTFRGLRKQITVEELVRSQVMDEATALQLQEGLTSIEEVTKNLQKFLEGTSCIAGVFVDATKERLSVYQAMKKGIIRPGTAFELLEAQAATGYVIDPIKGLKLTVEEAVRMGIVGPEFKDKLLSAERAVTGYKDPYSGKLISLFQAMKKGLILKDHGIRLLEAQIATGGIIDPEESHRLPVEVAYKRGLFDEEMNEILTDPSDDTKGFFDPNTEENLTYLQLMERCITDPQTGLCLLPLKEKKRERKTSSKSSVRKRRVVIVDPETGKEMSVYEAYRKGLIDHQTYLELSEQECEWEEITISSSDGVVKSMIIDRRSGRQYDIDDAITKNLIDRSALDQYRAGTLSITEFADMLSGNAGGFRSRSSSVGSSSSYPISSAVPRTQLASWSDPTEETGPVAGILDTETLEKVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPSTGERFPVTEAVNKGLVDKIMVDRINLAQKAFCGFEDPRTKTKMSAAQALKKGWLYYEAGQRFLEVQYLTGGLIEPDTPGRVSLDEALQRGTVDARTAQKLRDVSAYSKYLTCPKTKLKISYKDALDRSMVEEGTGLRLLEAAAQSSKGYYSPYSVSGSGSTAGSRTGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSGYGRRYASGPSASLGGPESAVA"
misc_feature 147..461
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="first calponin homology (CH) domain found in the
plectin/dystonin/MACF1 family; Region: CH_PLEC-like_rpt1;
cd21188"
/db_xref="CDD:409037"
misc_feature order(156..158,168..170,318..320,324..329,336..341,
345..347,372..398,411..413,417..422,426..431,438..443,
450..452)
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="putative actin binding site [polypeptide binding];
other site"
/db_xref="CDD:409037"
misc_feature 498..815
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="second calponin homology (CH) domain found in
plectin and similar proteins; Region: CH_PLEC_rpt2;
cd21238"
/db_xref="CDD:409087"
misc_feature order(504..506,516..518,666..668,672..677,684..689,
693..695,720..746,765..767,771..776,780..785,792..797,
804..806)
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="putative actin binding site [polypeptide binding];
other site"
/db_xref="CDD:409087"
misc_feature order(588..590,597..599,657..668,672..677)
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="polypeptide substrate binding site [polypeptide
binding]; other site"
/db_xref="CDD:409087"
misc_feature 1869..2405
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Spectrin repeats, found in several proteins
involved in cytoskeletal structure; family members include
spectrin, alpha-actinin and dystrophin; the spectrin
repeat forms a three helix bundle with the second helix
interrupted by proline in some sequences; Region: SPEC;
cd00176"
/db_xref="CDD:238103"
misc_feature 2178..2195
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="linker region [active]"
/db_xref="CDD:238103"
misc_feature 2394..2594
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="SH3 domain; Region: SH3_10; pfam17902"
/db_xref="CDD:407754"
misc_feature 2697..2930
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Spectrin like domain; Region: Spectrin_like;
pfam18373"
/db_xref="CDD:436447"
misc_feature <3093..4703
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="DNA repair exonuclease SbcCD ATPase subunit
[Replication, recombination and repair]; Region: SbcC;
COG0419"
/db_xref="CDD:223496"
misc_feature <4050..6170
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="MAEBL; Provisional; Region: PTZ00121"
/db_xref="CDD:173412"
misc_feature <5181..7724
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="MAEBL; Provisional; Region: PTZ00121"
/db_xref="CDD:173412"
misc_feature 8088..8204
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: Plectin; pfam00681"
/db_xref="CDD:425816"
misc_feature 8202..8318
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: Plectin; pfam00681"
/db_xref="CDD:425816"
misc_feature 8313..8423
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: PLEC; smart00250"
/db_xref="CDD:197605"
misc_feature 8430..8546
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: Plectin; pfam00681"
/db_xref="CDD:425816"
misc_feature 9066..9179
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: PLEC; smart00250"
/db_xref="CDD:197605"
misc_feature 9186..9302
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: Plectin; pfam00681"
/db_xref="CDD:425816"
misc_feature 9297..9407
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: PLEC; smart00250"
/db_xref="CDD:197605"
misc_feature 9414..9530
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: Plectin; pfam00681"
/db_xref="CDD:425816"
misc_feature 10065..10181
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: Plectin; pfam00681"
/db_xref="CDD:425816"
misc_feature 10179..10295
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: Plectin; pfam00681"
/db_xref="CDD:425816"
misc_feature 10290..10385
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: PLEC; smart00250"
/db_xref="CDD:197605"
misc_feature 10407..10523
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: Plectin; pfam00681"
/db_xref="CDD:425816"
misc_feature 11067..11177
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: PLEC; smart00250"
/db_xref="CDD:197605"
misc_feature 11184..11300
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: Plectin; pfam00681"
/db_xref="CDD:425816"
misc_feature 11295..11405
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: PLEC; smart00250"
/db_xref="CDD:197605"
misc_feature 11412..11528
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: Plectin; pfam00681"
/db_xref="CDD:425816"
misc_feature 11793..11906
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: PLEC; smart00250"
/db_xref="CDD:197605"
misc_feature 11913..12029
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: Plectin; pfam00681"
/db_xref="CDD:425816"
misc_feature 12141..12257
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: Plectin; pfam00681"
/db_xref="CDD:425816"
misc_feature <12444..12530
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: Plectin; pfam00681"
/db_xref="CDD:425816"
misc_feature 12840..12941
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: PLEC; smart00250"
/db_xref="CDD:197605"
misc_feature 12948..13064
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: Plectin; pfam00681"
/db_xref="CDD:425816"
misc_feature 13176..13292
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/note="Plectin repeat; Region: Plectin; pfam00681"
/db_xref="CDD:425816"
exon 139..200
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 201..290
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 291..368
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 369..461
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 462..628
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 629..744
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 745..851
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 852..971
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 972..1067
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 1068..1195
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 1196..1289
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 1290..1444
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 1445..1754
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 1755..1832
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 1833..1994
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 1995..2099
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 2100..2195
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 2196..2321
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 2322..2474
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 2475..2629
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 2630..2756
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 2757..2940
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 2941..3098
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 3099..3277
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 3278..3416
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 3417..3773
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 3774..3857
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 3858..3962
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 3963..4061
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 4062..7442
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
exon 7443..14826
/gene="Plec"
/gene_synonym="Pcn; Plec1; Pltn"
/inference="alignment:Splign:2.1.0"
ORIGIN
gctgtgccctccccggcctcaccactgccgctacaggcttgctgccttagaggggcctgtgaccctccccacgcccctcacccgctccctgttggccccgtgggctcctgtcgctgtccccaatgaagatcgtgcccgatgaacgagaccgtgtgcagaagaaaactttcaccaagtgggtcaataaacaccttatcaaggctcaaaggcacatcagtgacctgtatgaagacctccgtgatggccacaacctcatctccctgctggaagtcctctcaggagacagcctgccccgagagaaggggaggatgcgtttccacaagctgcaaaacgttcagattgccctggactatctccgacatcggcaggtgaagttggtgaacatcagaaatgatgacatcgccgatggcaaccccaagctgaccctgggcctgatctggacaatcatcctgcacttccagatctcagacattcaggtgagcggccagtccgaggacatgacagccaaggagaagctgctgctgtggtctcagcgtatggtagagggctaccaaggcctgcgctgtgacaacttcaccaccagctggcgcgacggccggctcttcaatgctatcatccacaggcacaagcccatgctcatagacatgaataaagtgtaccgacagaccaacctggagaacctagaccaggccttctccgtggcagagcgggacctgggagttaccaggctcctggacccagaagatgtggatgtccctcagcctgatgagaagtccatcatcacctacgtttcatccctgtatgatgccatgccccgtgtgccgggcgcacaggatggagtgagggccaatgagctgcagcttcgttggcaagagtaccgggagcttgtgctgctgctgctacagtggatccggcaccacaccgctgcttttgaggagcgcaagttcccctccagctttgaggagattgagatcctatggtgccagtttctgaagttcaaggagacagaacttcctgccaaggaggcagacaagaaccggtccaaaggcatctaccagtctttggagggagcagtacaagcaggccagctcaagattccccctggctaccacccgctagacgtggaaaaggagtggggcaagctgcacgtggccatcctggagcgggagaagcaactccggagcgagtttgagaggctggagtgtcttcagcgcattgtgagcaagctacagatggaggctgggctatgtgaggagcagctgaaccaggccgattccctactgcagtcggatattcggctgctggcctcaggcaaggcggcacagcgggctggggaagtggagagagacctggacaaggctgatggtatgatccggctgttgttcaatgatgtgcagacccttaaagatgggcggcatccacagggtgaacagatgtaccggagggtgtatcgtctgcatgagcgcctggtagccatccgcactgaatacaacctccggctgaaggcaggggtgggtgcccctgtgacccaggtgaccctgcagagcacacagaggcgcccagagctagaggactccacactgcgttacctgcacgacctgctggcatgggtggaggagaaccagcgtcgaatagacggtgctgagtggggcgtggacttgcccagtgtagaggcacagctgggcagccaccgaggcatgcatcagtctattgaggaattccgggccaagatcgagcgggctcggaatgatgagagccagctctcccctgccacccgaggtgcctaccgagactgcctgggccgcctggacctgcagtatgcaaagctgctgaactcctccaaggcccgcctccggtccctggagagcttgcatgggtttgtggcggcagctaccaaggagctgatgtggctgaatgagaaggaagaggaagaagtgggctttgattggagtgaccgcaacaccaacatggctgccaagaaagaaagttactcggccctgatgcgtgagctggagatgaaggaaaagaaaattaaggagatccagaacacgggggacaggttgctgcgggaagaccatcctgcccggcccacagtggagtccttccaggctgccctgcagacacagtggagctggatgctgcagctgtgttgctgcattgaagcgcacttgaaagagaacacagcctacttccagttcttctcagatgttcgggaggctgaggaacagttgcagaaactacaggagacgttacgcaggaagtacagctgtgaccgctccatcactgtcacaaggcttgaggacctgctgcaggatgcccaggatgagaaggagcaactgaatgagtacaaagggcacctctcaggcctggccaagcgggccaaggctattgtgcagctgaagccacgcaaccctgcccaccctgtgcggggtcacgtgcccctgctagctgtgtgtgactacaagcaggtggaggtgactgtgcacaagggtgaccaatgccagctggtgggccctgcccagccgttccactggaaggtgctcggtggttccagcagtgaggctgccgtgccttctgtgtgctttcttgtgccgccacccaaccaggaggcccaggaagctgttgctaggctggaggcccagcatcaggccctggttactctgtggcaccagcttcacgtggacatgaagagtcttctggcatggcagagcctcaatcgtgacatacagctcatccggtcctggtccctagtcacgttccgcacgctgaagcccgaggagcagcggcaagctctgcgcaacctggagttgcactaccaggccttccttcgagacagccaggacgctggtggctttgggcccgaggaccggctggtggcagagcgcgaatatggatcttgtagtcgccactaccagcagctgctacaaagcctggagcagggtgagcaggaggagtctcgctgtcagcgatgcatctcggagctcaaggacattcggctgcaactggaggcctgtgagactcggactgtgcaccgtctgcggctgccactggataaagaccccgcacgggagtgtgcccagcgcatcgctgagcaacagaaagcacaggctgaggtggaggggctgggcaagggagttgcccggctgtctgctgaggctgagaaagttctggccttgccagagccgtcacctgctgcaccaactctgcgctcggagttggaattgaccctgggcaagctggaacaggtcagaagcctgtctgccatctacttggagaaactcaagaccatcagcttggtaattcgcagtacccagggggctgaggaggtgcttaaaacacacgaggagcacctgaaggaggcccaggccgtgcctgccacactccaagagctcgaagtcaccaaggcttcactaaagaagctgcgggcccaggcggaggcacagcagcctgtattcaacaccctacgagatgagctgaggggggcacaggaagttggtgaacggctacagcagcggcatggtgagcgggacgtggaagtagagcgctggcgagaacgtgtcactcagttgctggagcgctggcaggctgtgctagcccagactgatgtgcggcagcgggagcttgaacagctgggccgccaacttcgctactaccgtgaaagtgcggatccgctgagctcctggctgcaggatgccaagagccggcaagagcagatccaggctgtgccaatagccaacagtcaggctgcacgagaacagctgcgccaggagaaggccctgctggaggagattgagcgccatggtgagaaggttgaggagtgccagaagtttgctaagcagtacatcaatgcaatcaaggactatgagctccagctgatcacctacaaggctcagcttgaacctgtggcctcccccgccaagaagcccaaggttcagtctggatcggagagcgtcatccaggagtacgtggatctgcgtacacgctacagtgagctgaccacactcacgagtcagtacatcaagttcatcagtgagacactgcgccgcatggaagaggaagagcggctggctgagcaacagcgggcagaggagcgggagcgcctggccgaggtggaggccgcgctggagaagcagcggcagctggctgaggcccatgcccaggccaaggcacaggccgagctggaggcacgagaactgcagcggcgcatgcaggaggaggtgacgcggcgcgaggaggcggcggtggacgcacagcaacagaagcgcagcatccaagaggagctgcagcatctgcggcaaagctcagaggcagagatccaggccaaggcccagcaggtggaggctgcagagcgcagccgcatgcgcattgaggaagagatccgcgtagtccgtctgcagctagagacaactgagcgtcagcgtggaggggcggaggatgagctgcaggctctgcgtgcacgggctgaggaggcagaagcacagaagcggcaggctcaggaggaagccgagcgcttgcggaggcaggtgcaggatgagagccaacgcaaacggcaggcggaggccgagctggccctgcgtgtgaaggcagaagcggaggcagcgcgagagaagcagcgggccctgcaggctctggatgaactgaaactgcaggccgaggaggccgaacggcggctgcgccaagccgaggcagagagggctcgccaagtgcaggtagccctggagacagcgcagcgtagtgcagaagtggagctgcagagcaagcgtgcgtcctttgcagagaagaccgcacagttggagcgcacgctgcaggaagagcacgtgacagtgacacagctgcgggaggaggcggaacggcgggcacagcagcaggctgaagccgagcgagcccgtgaggaagccgagcgggagctggagcgctggcagctgaaggccaatgaggcgctgcggctgcggctgcaggcagaggaggtggcacagcagaagagcctggcccaggccgat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//
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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