2024-05-06 10:56:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001135607 908 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus reproductive homeobox on X chromosome 3 (Rhox3), mRNA. ACCESSION NM_001135607 VERSION NM_001135607.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ058651.1. ##Evidence-Data-START## Transcript exon combination :: DQ058651.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA5760384, SAMEA5760386 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..908 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="Sprague-Dawley" /db_xref="taxon:10116" /chromosome="X" /map="Xq35" gene 1..908 /gene="Rhox3" /note="reproductive homeobox on X chromosome 3" /db_xref="GeneID:100190895" /db_xref="RGD:2301305" exon 1..400 /gene="Rhox3" /inference="alignment:Splign:2.1.0" misc_feature 361..363 /gene="Rhox3" /note="upstream in-frame stop codon" CDS 385..861 /gene="Rhox3" /note="rhox homeobox family member 1-like" /codon_start=1 /product="reproductive homeobox on X chromosome 3" /protein_id="NP_001129079.1" /db_xref="GeneID:100190895" /db_xref="RGD:2301305" /translation="
MDSTQGTKVLLTEEGRNEEDRGQGEPAMGATAAKVRVIKELNREGPAAGTAGLVDTDVNKEDGGANGGQKNEQQLKEPIPEHAEGKSVQSVPRQVPRRRLRHRFTQWQLEELESIFKANCFLSVEARKQLARWMGVTEAIVKRWFRKRREQYRRYKRL"
misc_feature order(676..690,694..696,745..747,763..765,802..804, 808..813,820..825,829..837,841..846) /gene="Rhox3" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(682..684,691..693,811..813,820..825,832..834) /gene="Rhox3" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 685..843 /gene="Rhox3" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cl00084" /db_xref="CDD:444687" exon 401..764 /gene="Rhox3" /inference="alignment:Splign:2.1.0" exon 765..810 /gene="Rhox3" /inference="alignment:Splign:2.1.0" exon 811..908 /gene="Rhox3" /inference="alignment:Splign:2.1.0" ORIGIN
cttaatcctctcaaataggctcttataattgaccactatcccttccctaggaagataattcaccaaagtcagaggactcagctgagatgctgcttaaaaggccatttccgcatctctacttgcccaaggactgtgccctccctgaaaacacattctgtttatcacagcaccaaactgctctcactagggcacctcagggctcaatccatagcaacaggtgatgagcttgaagccagaacattacatctataactggacacatagtaatgtggaatgggctggaagaaatctcttccaggtcaagggtcactgcttctgctctattaccggaactacatcggaattaccagaggttccagttaattctacagatgtaaaactaaaatggacagcactcaaggtacaaaggttttgctgactgaagagggaagaaacgaggaagatagaggacagggcgagccggcaatgggagccacagcagcaaaagtgagagtaataaaagaattaaacagagagggtcctgctgctggcactgcaggccttgtagatacagacgtgaacaaggaagatggtggcgccaacggaggccagaagaatgagcagcaactgaaggagccgattcctgagcatgctgagggcaagagtgtccagtctgtgcctaggcaggtgccacgacgtcgactacgccatagattcacccagtggcagttggaggaactagagagcattttcaaggccaattgcttcctcagtgtagaagcaagaaaacaactggccagatggatgggtgtgactgaagccatagtgaagagatggtttcggaagaggagagaacaatacaggcgatataagaggctataaggtctctgaagttctcctgctttctagtacatttttccctggcaact
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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