2024-05-04 21:57:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001134789 808 bp mRNA linear ROD 23-MAR-2023 DEFINITION Rattus norvegicus RNA polymerase II, I and III subunit H (Polr2h), mRNA. ACCESSION NM_001134789 XM_001059014 XM_573313 VERSION NM_001134789.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 808) AUTHORS Kang X, Hu Y, Li Y, Guo X, Jiang X, Lai L, Xia B and Jin C. TITLE Structural, biochemical, and dynamic characterizations of the hRPB8 subunit of human RNA polymerases JOURNAL J Biol Chem 281 (26), 18216-18226 (2006) PUBMED 16632472 REFERENCE 2 (bases 1 to 808) AUTHORS Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail S, Li P and Sutton G. TITLE Gene and alternative splicing annotation with AIR JOURNAL Genome Res 15 (1), 54-66 (2005) PUBMED 15632090 REFERENCE 3 (bases 1 to 808) AUTHORS Shultz MA, Zhang L, Gu YZ, Baker GL, Fannuchi MV, Padua AM, Gurske WA, Morin D, Penn SG, Jovanovich SB, Plopper CG and Buckpitt AR. TITLE Gene expression analysis in response to lung toxicants: I. Sequencing and microarray development JOURNAL Am J Respir Cell Mol Biol 30 (3), 296-310 (2004) PUBMED 12947022 REFERENCE 4 (bases 1 to 808) AUTHORS Chu S, Blaisdell CJ, Liu MZ and Zeitlin PL. TITLE Perinatal regulation of the ClC-2 chloride channel in lung is mediated by Sp1 and Sp3 JOURNAL Am J Physiol 276 (4), L614-L624 (1999) PUBMED 10198359 REFERENCE 5 (bases 1 to 808) AUTHORS Kershnar E, Wu SY and Chiang CM. TITLE Immunoaffinity purification and functional characterization of human transcription factor IIH and RNA polymerase II from clonal cell lines that conditionally express epitope-tagged subunits of the multiprotein complexes JOURNAL J Biol Chem 273 (51), 34444-34453 (1998) PUBMED 9852112 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CB758009.1, CB699618.1, CF113682.1 and BQ210721.1. On or before Sep 7, 2008 this sequence version replaced XM_573313.2, XM_001059014.1. ##Evidence-Data-START## Transcript exon combination :: FQ222889.1, FM115447.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA5760476, SAMN06680439 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-51 CB758009.1 12-62 52-53 CB699618.1 47-48 54-458 CF113682.1 27-431 459-808 BQ210721.1 1-350 c FEATURES Location/Qualifiers source 1..808 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="Sprague-Dawley" /db_xref="taxon:10116" /chromosome="11" /map="11q23" gene 1..808 /gene="Polr2h" /gene_synonym="RGD1561203; RPB17" /note="RNA polymerase II, I and III subunit H" /db_xref="GeneID:498109" /db_xref="RGD:1561203" exon 1..164 /gene="Polr2h" /gene_synonym="RGD1561203; RPB17" /inference="alignment:Splign:2.1.0" misc_feature 23..25 /gene="Polr2h" /gene_synonym="RGD1561203; RPB17" /note="upstream in-frame stop codon" CDS 92..544 /gene="Polr2h" /gene_synonym="RGD1561203; RPB17" /EC_number="2.7.7.6" /note="polymerase (RNA) II (DNA directed) polypeptide H; polymerase (RNA) II subunit H; RNA polymerase II subunit H; DNA-directed RNA polymerases I, II, and III subunit RPABC3-like" /codon_start=1 /product="DNA-directed RNA polymerases I, II, and III subunit RPABC3" /protein_id="NP_001128261.1" /db_xref="GeneID:498109" /db_xref="RGD:1561203" /translation="
MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFEVDSRVYLLMKKLAF"
misc_feature 95..532 /gene="Polr2h" /gene_synonym="RGD1561203; RPB17" /note="RNA polymerase subunit 8; Region: RPOL8c; smart00658" /db_xref="CDD:197821" exon 165..248 /gene="Polr2h" /gene_synonym="RGD1561203; RPB17" /inference="alignment:Splign:2.1.0" exon 249..342 /gene="Polr2h" /gene_synonym="RGD1561203; RPB17" /inference="alignment:Splign:2.1.0" exon 343..426 /gene="Polr2h" /gene_synonym="RGD1561203; RPB17" /inference="alignment:Splign:2.1.0" exon 427..790 /gene="Polr2h" /gene_synonym="RGD1561203; RPB17" /inference="alignment:Splign:2.1.0" ORIGIN
gtcctgtcttcttttctccacgtgagggggtgcgcgaatccccagtggtggccgcgcgctcagcacctctgcagctctcgtgcccttcacgatggcgggcatcctgttcgaggatattttcgatgtgaaagacattgacccagaaggcaagaaatttgaccgagtatcccgtctgcattgtgagagtgaatctttcaagatggacctcatcttagatgtaaacattcagatttaccctgtagacttaggtgacaagttccggttggttatagctagtactttgtatgaagatggtaccttggatgatggtgaatacaaccccacagacgacaggccttccagggctgaccagtttgagtatgtaatgtatgggaaagtgtacaggatcgaaggggacgagacctcaacggaagcagccacacgtctctctgcgtatgtgtcctatggcggcctcctcatgaggcttcagggggacgccaacaacctgcatggatttgaggtggactcccgagtctacctgctgatgaagaagctggcgttctgaacttccgggaaaccagccttgccgcttagtcactcgagccacggacattggtcaagcctgtgcacgagctgtttgcctgtagaagtgatggtgctctgtgtcctctgtggtacatcttcagcttctccgaattcagtggaaaaccgaccagtctgtaaaaggccaagtgggagagcctagcacgaacctgaagttgtattattattatttttttttaattaaagtttactttttcagactcttctcaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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