LOCUS       NM_001108746            1265 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus similar to RIKEN cDNA 9530003J23 (RGD1306474),
            mRNA.
ACCESSION   NM_001108746 XM_001080967 XM_343209
VERSION     NM_001108746.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1265)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            CH473960.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001080967.1, XM_343209.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB811061.1, CB779224.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760476
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1265
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q22"
     gene            1..1265
                     /gene="RGD1306474"
                     /gene_synonym="Lyzf1"
                     /note="similar to RIKEN cDNA 9530003J23"
                     /db_xref="GeneID:362881"
                     /db_xref="RGD:1306474"
     exon            1..220
                     /gene="RGD1306474"
                     /gene_synonym="Lyzf1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    22..24
                     /gene="RGD1306474"
                     /gene_synonym="Lyzf1"
                     /note="upstream in-frame stop codon"
     CDS             76..531
                     /gene="RGD1306474"
                     /gene_synonym="Lyzf1"
                     /note="lysozyme f1"
                     /codon_start=1
                     /product="uncharacterized protein LOC362881 precursor"
                     /protein_id="NP_001102216.1"
                     /db_xref="GeneID:362881"
                     /db_xref="RGD:1306474"
                     /translation="

MKALPTLLTLGLLLLSITVQGKVLNRCLLARTLQRFGLGGFKGISLANWICLAKSVSGYDTKAIKYNHEDRSTNYGIFQISSRYWCNDSKTPGSKNFCRVSCKALLKNNIKASVTCAKRIVKDPRGITTWEAWRKNCEHKNLFQYVQGCSL"

     sig_peptide     76..138
                     /gene="RGD1306474"
                     /gene_synonym="Lyzf1"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    139..522
                     /gene="RGD1306474"
                     /gene_synonym="Lyzf1"
                     /note="C-type lysozyme; Region: LYZ_C; cd16897"
                     /db_xref="CDD:340383"
     misc_feature    order(274..276,295..297,310..318,325..330,442..444,
                     448..450,460..468)
                     /gene="RGD1306474"
                     /gene_synonym="Lyzf1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:340383"
     misc_feature    order(274..276,295..297,310..318,325..330,442..444,
                     448..450,460..468)
                     /gene="RGD1306474"
                     /gene_synonym="Lyzf1"
                     /note="sugar binding site [chemical binding]; other site"
                     /db_xref="CDD:340383"
     exon            221..385
                     /gene="RGD1306474"
                     /gene_synonym="Lyzf1"
                     /inference="alignment:Splign:2.1.0"
     exon            386..464
                     /gene="RGD1306474"
                     /gene_synonym="Lyzf1"
                     /inference="alignment:Splign:2.1.0"
     exon            465..1265
                     /gene="RGD1306474"
                     /gene_synonym="Lyzf1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

tgaagggagttgagagatgcttaaatactggggcctgattgctcggggcagtcactgaggtggttcccaggcaacatgaaggctctcccaactctcctcactctggggctcctcctgctttccatcacagtccagggcaaggtcctcaaccgatgtttgctagccagaactctacaaagatttggactaggtggcttcaaaggaatcagcctggcgaattggatctgtttggctaagtcggtgagtggttatgacacaaaagctataaaatacaaccatgaagaccgaagcaccaactatgggatatttcagattagtagccgatactggtgtaatgacagcaaaaccccaggatcaaagaacttttgtcgggtgtcctgcaaagctttgctgaagaataacatcaaggctagtgtaacttgtgcgaagaggatcgtgaaggatccacgaggaattactacatgggaggcatggaggaaaaactgtgagcacaaaaacctctttcagtacgttcagggctgcagtctataaccgcttccctgctcagatcattcgctctttctcagagcatggcaaacaagttaggtcaaaggtcaccctgctgtagttccccttcggacaaagtggagctgcacaggagcgagagctagaagaaatgagtcttctgagaaacttcctgtccactggtttctctgtgcagtcctggttgtcctcaaactcactctgtagaccaggctggcctcaaactcagagaaccgtctgcctctgcctccagagtgctggtcttaaaggcttacaccaccatcaccacccagctacctagtgtgattatcatttgatgataagcctagatttttcagcttgtgagtgaaactgaagtggtagagtatttctctaactccttgcttttcaaatgcttctctaacatgccattctccttcaacaaaggaactcaggtttaatcatgaacaatggactcttcctcatacacacacacacacacacacacacacacacacacacacacacacacacacacactcagcttaggcaaaactcacagctatggtggtatctgatcccttcgtctgtttgaactactccaaaaaccttaaagttgtccactgttgggtaaggcaacatttgcaaaggtgacttctaaatgactgaactcaggagacttagctgttgttttcctgtactgacctttggctgcggcgtttgcctgacgtgcttgagaaataaatgtacccctgcttgtgaca

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