2024-05-04 22:23:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001108746 1265 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus similar to RIKEN cDNA 9530003J23 (RGD1306474), mRNA. ACCESSION NM_001108746 XM_001080967 XM_343209 VERSION NM_001108746.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1265) AUTHORS Gaudet P, Livstone MS, Lewis SE and Thomas PD. TITLE Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium JOURNAL Brief Bioinform 12 (5), 449-462 (2011) PUBMED 21873635 COMMENT PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from CH473960.2. On or before Oct 4, 2007 this sequence version replaced XM_001080967.1, XM_343209.3. ##Evidence-Data-START## Transcript exon combination :: CB811061.1, CB779224.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA5760400, SAMEA5760476 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1265 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="7" /map="7q22" gene 1..1265 /gene="RGD1306474" /gene_synonym="Lyzf1" /note="similar to RIKEN cDNA 9530003J23" /db_xref="GeneID:362881" /db_xref="RGD:1306474" exon 1..220 /gene="RGD1306474" /gene_synonym="Lyzf1" /inference="alignment:Splign:2.1.0" misc_feature 22..24 /gene="RGD1306474" /gene_synonym="Lyzf1" /note="upstream in-frame stop codon" CDS 76..531 /gene="RGD1306474" /gene_synonym="Lyzf1" /note="lysozyme f1" /codon_start=1 /product="uncharacterized protein LOC362881 precursor" /protein_id="NP_001102216.1" /db_xref="GeneID:362881" /db_xref="RGD:1306474" /translation="
MKALPTLLTLGLLLLSITVQGKVLNRCLLARTLQRFGLGGFKGISLANWICLAKSVSGYDTKAIKYNHEDRSTNYGIFQISSRYWCNDSKTPGSKNFCRVSCKALLKNNIKASVTCAKRIVKDPRGITTWEAWRKNCEHKNLFQYVQGCSL"
sig_peptide 76..138 /gene="RGD1306474" /gene_synonym="Lyzf1" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 139..522 /gene="RGD1306474" /gene_synonym="Lyzf1" /note="C-type lysozyme; Region: LYZ_C; cd16897" /db_xref="CDD:340383" misc_feature order(274..276,295..297,310..318,325..330,442..444, 448..450,460..468) /gene="RGD1306474" /gene_synonym="Lyzf1" /note="sugar binding site [chemical binding]; other site" /db_xref="CDD:340383" misc_feature order(274..276,295..297,310..318,325..330,442..444, 448..450,460..468) /gene="RGD1306474" /gene_synonym="Lyzf1" /note="sugar binding site [chemical binding]; other site" /db_xref="CDD:340383" exon 221..385 /gene="RGD1306474" /gene_synonym="Lyzf1" /inference="alignment:Splign:2.1.0" exon 386..464 /gene="RGD1306474" /gene_synonym="Lyzf1" /inference="alignment:Splign:2.1.0" exon 465..1265 /gene="RGD1306474" /gene_synonym="Lyzf1" /inference="alignment:Splign:2.1.0" ORIGIN
tgaagggagttgagagatgcttaaatactggggcctgattgctcggggcagtcactgaggtggttcccaggcaacatgaaggctctcccaactctcctcactctggggctcctcctgctttccatcacagtccagggcaaggtcctcaaccgatgtttgctagccagaactctacaaagatttggactaggtggcttcaaaggaatcagcctggcgaattggatctgtttggctaagtcggtgagtggttatgacacaaaagctataaaatacaaccatgaagaccgaagcaccaactatgggatatttcagattagtagccgatactggtgtaatgacagcaaaaccccaggatcaaagaacttttgtcgggtgtcctgcaaagctttgctgaagaataacatcaaggctagtgtaacttgtgcgaagaggatcgtgaaggatccacgaggaattactacatgggaggcatggaggaaaaactgtgagcacaaaaacctctttcagtacgttcagggctgcagtctataaccgcttccctgctcagatcattcgctctttctcagagcatggcaaacaagttaggtcaaaggtcaccctgctgtagttccccttcggacaaagtggagctgcacaggagcgagagctagaagaaatgagtcttctgagaaacttcctgtccactggtttctctgtgcagtcctggttgtcctcaaactcactctgtagaccaggctggcctcaaactcagagaaccgtctgcctctgcctccagagtgctggtcttaaaggcttacaccaccatcaccacccagctacctagtgtgattatcatttgatgataagcctagatttttcagcttgtgagtgaaactgaagtggtagagtatttctctaactccttgcttttcaaatgcttctctaacatgccattctccttcaacaaaggaactcaggtttaatcatgaacaatggactcttcctcatacacacacacacacacacacacacacacacacacacacacacacacacacacactcagcttaggcaaaactcacagctatggtggtatctgatcccttcgtctgtttgaactactccaaaaaccttaaagttgtccactgttgggtaaggcaacatttgcaaaggtgacttctaaatgactgaactcaggagacttagctgttgttttcctgtactgacctttggctgcggcgtttgcctgacgtgcttgagaaataaatgtacccctgcttgtgaca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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