2024-05-05 00:08:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001108004 3068 bp mRNA linear ROD 06-JAN-2023 DEFINITION Rattus norvegicus DnaJ heat shock protein family (Hsp40) member B5 (Dnajb5), transcript variant 2, mRNA. ACCESSION NM_001108004 XM_001061825 XM_233767 VERSION NM_001108004.2 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 3068) AUTHORS Hageman J, van Waarde MA, Zylicz A, Walerych D and Kampinga HH. TITLE The diverse members of the mammalian HSP70 machine show distinct chaperone-like activities JOURNAL Biochem J 435 (1), 127-142 (2011) PUBMED 21231916 REFERENCE 2 (bases 1 to 3068) AUTHORS Ago T, Liu T, Zhai P, Chen W, Li H, Molkentin JD, Vatner SF and Sadoshima J. TITLE A redox-dependent pathway for regulating class II HDACs and cardiac hypertrophy JOURNAL Cell 133 (6), 978-993 (2008) PUBMED 18555775 REFERENCE 3 (bases 1 to 3068) AUTHORS Chen MS, Roti JR and Laszlo A. TITLE Hsc40, a new member of the hsp40 family, exhibits similar expression profile to that of hsc70 in mammalian cells JOURNAL Gene 238 (2), 333-341 (1999) PUBMED 10570961 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000161.1. On Jan 6, 2023 this sequence version replaced NM_001108004.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00132308, SAMEA5760393 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-87 JACYVU010000161.1 32601014-32601100 88-232 JACYVU010000161.1 32601897-32602041 233-477 JACYVU010000161.1 32604212-32604456 478-1079 JACYVU010000161.1 32607398-32607999 1080-3068 JACYVU010000161.1 32608208-32610196 FEATURES Location/Qualifiers source 1..3068 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="5" /map="5q22" gene 1..3068 /gene="Dnajb5" /note="DnaJ heat shock protein family (Hsp40) member B5" /db_xref="GeneID:313811" /db_xref="RGD:1307453" exon 1..87 /gene="Dnajb5" /inference="alignment:Splign:2.1.0" exon 88..232 /gene="Dnajb5" /inference="alignment:Splign:2.1.0" CDS 165..1313 /gene="Dnajb5" /note="isoform 2 is encoded by transcript variant 2; dnaJ homolog subfamily B member 5; DnaJ (Hsp40) homolog, subfamily B, member 5; heat shock cognate 40" /codon_start=1 /product="dnaJ homolog subfamily B member 5 isoform 2" /protein_id="NP_001101474.1" /db_xref="GeneID:313811" /db_xref="RGD:1307453" /translation="
MFKIQLEPLKLRAWTLNGFVKFRNKEPSTGPVAVMGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRSLYDQYGEEGLKTGGGTSGGSGGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPFSGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGCTVNIPTIDGRVIPLPCNDVIKPGTVKRLRGEGLPFPKVPTQRGDLIVEFKVRFPDRLTPQTRQILKQHLPCS"
misc_feature 264..1295 /gene="Dnajb5" /note="DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]; Region: DnaJ; COG0484" /db_xref="CDD:223560" exon 233..477 /gene="Dnajb5" /inference="alignment:Splign:2.1.0" exon 478..1079 /gene="Dnajb5" /inference="alignment:Splign:2.1.0" exon 1080..3068 /gene="Dnajb5" /inference="alignment:Splign:2.1.0" ORIGIN
gtcccgagtggaggcggcggagccggagccgggggagggggcagcggctgatagaaggaccgcggcggcgcccgcagctcctcaccgcagcacccccactgcaggctcgaggagctttccggagcttcccacacttctggggagaagacttcttagccagcttgatgtttaaaattcagctggagcccttaaaacttcgagcgtggacgctgaatgggtttgtaaagtttcgaaacaaggagcccagcaccggtccagtggctgtgatgggaaaagattattacaagattcttggaatcccgtctggggccaacgaagatgagatcaagaaagcctatcgaaagatggccttgaagtaccacccagacaagaacaaagaacccaacgctgaggagaagtttaaggagattgccgaggcctacgacgtgctgagtgaccctaagaaacggagcctgtatgaccagtatggggaggaaggcctcaagaccggcggtggtacctcaggtggctccggtggctcctttcactacacctttcacggggaccctcatgccacctttgcttccttctttggtggctccaaccccttcgatatcttctttgccagcagccgctccactcggcctttcagtggctttgacccagatgacatggatgtggatgaagatgaggacccatttggtgcctttggccgctttggcttcaatgggctgagtaggggtccgaggcgagccccagaaccactgtacccccggcgcaaggtacaggacccccctgtggtgcatgagctgcgggtgtccctggaggagatctaccacggctccaccaagcgcatgaagatcacaaggcgacgccttaaccccgatgggcgaactgtgcgcaccgaggacaaaatcctgcacattgtcatcaaacgtggctggaaggagggcaccaagattaccttccccaaagagggcgatgccacacccgacaacatcccagccgacattgtcttcgtgctcaaagacaagcctcatgcgcactttcgccgagatggcaccaacgtgctctacagtgcactcatcagcctcaaggaggcgctgtgtggctgcaccgtgaacattcccaccattgatggccgagtgatccctttaccctgcaatgatgttattaaaccaggcaccgtgaagagactccgtggggagggacttcccttccccaaggtgcccactcagcggggagacctcattgttgagttcaaagttcgattcccagacagattaaccccacagacacggcagatccttaaacagcacctaccctgctcctaggctctccctagcctgtctggagcccaccacagcaatacccccacactcaccaatctcatgtggacccggctggatgtccaccggacactggcactttcctaaaatgcaagaagccactgattttcaggaaaatgttcctcttcccgacaacccctttcggagctgggctgctttgggggaatgggagggcggtggggagaactagcccagaccaggggtcaatttttttgtcacgtgctttgaatccagttcccactgcagtggctggagagtgacttgagagctactcggagctatagattccttgtcctgcctgtaaatagcatgtcctcccccttctcagccttgctaacacctttcctctcccttcccctcggcttcctcctgtttctggagaaagaagttagaaaggacaccgcttcccaccccacccccaggtctgtagtgtccgaggctattttgcacaagtgttcgtgcacatgaagcactcgccaaaatggtccgtgtctctctgagagacaagaaaggacaggaggtaggaaggtcccttaccgatgaacaaggctgtcatttgagcacgagacacttttcatttggggcagggaggtgagccaacccttaggagccttcccaacagctgccctgcctacaccccacagagttggaggatctgtccccctcagctgctctggggagtgttcaggggtggagagaagaaaggagggcctgaaccatccaccacagctaagaggtggggcaggacccatctcccagccatcaccaggaaggaaaagggctttgggatcaggtggcagctgttccccaccaagagattcaggatcacaggttccttcccatatctctgaactcagggcctagccaccccaaacttccaagccccacttttgcgatatgtgaagctacttatttcttacttttcttggaggctgtgtcggaaatttccagcctctctgcctgtgtgaccctcaccccaccccactcccacagttgtataaaagtcgaatagtgaaggagctgggagaaaactgcttcagttggtcctggggtggggtctttaggttttctcactttgacaagcccctgaatgtttttatagtagttttttgtatttttttgtaatgacagtattatgaaaaaaataaagtattttaaaaatatggcctctgagcagaagcagtaaccctgggtgcaggcaggaataaagtggcactgtcagcctccttcagggccctgatcatccaggaaagccaagcagcctcagcagctgacgctcaccccttctccctgtaagctctgacttcttggaattctggaacatataccccaaacaaacagcaacaccagaagccacagcccagctgtctgcgaagaaagatgggcctttgttgtgagagagagcctggcctcttcagaagcttgtcaacatgagatctagcacacttgtctcggtgttctctttgaattagagacactttattccttggaggagattgaggactctctgactagcgagactaggcacactcccaaaaacagagttgggctaccaagtgggctggagagatggttcagcagttaagagcacttcctgttctcacagagaagccaaattcagttcccaggacacatcaggcagctcgagactgctcaagggaatccaacaagtccagcctcacaaagaatctgcacccatgcacacacacacttacaaaaaataaaaagtttttttaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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