2024-04-29 15:42:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001106244 799 bp mRNA linear ROD 23-MAR-2023 DEFINITION Rattus norvegicus RNA polymerase II subunit I (Polr2i), mRNA. ACCESSION NM_001106244 XM_001075773 XM_214895 VERSION NM_001106244.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 799) AUTHORS Kershnar E, Wu SY and Chiang CM. TITLE Immunoaffinity purification and functional characterization of human transcription factor IIH and RNA polymerase II from clonal cell lines that conditionally express epitope-tagged subunits of the multiprotein complexes JOURNAL J Biol Chem 273 (51), 34444-34453 (1998) PUBMED 9852112 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473979.2. On or before Oct 4, 2007 this sequence version replaced XM_214895.4, XM_001075773.1. ##Evidence-Data-START## Transcript exon combination :: FM052786.1, FM058925.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00132261, SAMD00132262 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..799 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="1" /map="1q21" gene 1..799 /gene="Polr2i" /note="RNA polymerase II subunit I" /db_xref="GeneID:292778" /db_xref="RGD:1309395" exon 1..437 /gene="Polr2i" /inference="alignment:Splign:2.1.0" misc_feature 298..300 /gene="Polr2i" /note="upstream in-frame stop codon" CDS 379..756 /gene="Polr2i" /EC_number="2.7.7.6" /note="polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa; polymerase (RNA) II subunit I" /codon_start=1 /product="DNA-directed RNA polymerase II subunit RPB9" /protein_id="NP_001099714.1" /db_xref="GeneID:292778" /db_xref="RGD:1309395" /translation="
MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE"
misc_feature 418..753 /gene="Polr2i" /note="DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]; Region: RPB9; COG1594" /db_xref="CDD:224510" misc_feature 598..750 /gene="Polr2i" /note="C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II; Region: Zn-ribbon_RPB9; cd10508" /db_xref="CDD:259793" misc_feature order(598..600,604..609,613..615,667..672,676..678, 700..708) /gene="Polr2i" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:259793" misc_feature order(634..636,643..645,718..720,733..735) /gene="Polr2i" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:259793" exon 438..492 /gene="Polr2i" /inference="alignment:Splign:2.1.0" exon 493..566 /gene="Polr2i" /inference="alignment:Splign:2.1.0" exon 567..641 /gene="Polr2i" /inference="alignment:Splign:2.1.0" exon 642..693 /gene="Polr2i" /inference="alignment:Splign:2.1.0" exon 694..799 /gene="Polr2i" /inference="alignment:Splign:2.1.0" ORIGIN
ggaggccgacgccggggagaatggctggagttatcctggcccgccgagtataagctcggcgcatgtgcactggccttgggccaagaagagagcggtggcttctcccgtttatgctcagcgccttgtggatgacgttgcgcgtcacagtcccagcccttgtcctaaatccaaaccactcggagttgtgaagcaaggttccgaaataatcgggagtaggtatcaaaggatagacgcaagccgtcagccagacatccataagataaggagccctcacgtgcacgcagctccgccccattttagtgcagctacgcgatccgacccttcccgcggtccgtagcgcggccgcgcaagcgcagaaaggtaatcagcccagtcgctatggaacctgacgggacgtacgagcctggcttcgtcggtattcggttctgccaggaatgtaataacatgctgtaccccaaggaggacaaggagaatcgcattctgctgtacgcgtgccggaattgcgattaccagcaggaagccgacaacagctgcatctacgtcaacaaaatcacgcacgaagtggacgagctgacccagatcatcgcagacgtgtcccaggaccctacgttgccccggaccgaggaccacccgtgccagaagtgtggccacaaggaggcagtgttcttccagtcacacagtgcccgagctgaggatgccatgcgcctgtactatgtatgcaccgccccacactgcggccaccgctggactgagtgaccgttccttcctccatttgtaataaatgcccagtttccacact
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]