2024-04-29 05:36:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001100885 1099 bp mRNA linear ROD 23-MAR-2023 DEFINITION Rattus norvegicus myosin light chain 9 (Myl9), mRNA. ACCESSION NM_001100885 XM_001067182 XM_006235401 XM_215905 VERSION NM_001100885.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1099) AUTHORS Lu Z, Ma XN, Zhang HM, Ji HH, Ding H, Zhang J, Luo D, Sun Y and Li XD. TITLE Mouse myosin-19 is a plus-end-directed, high-duty ratio molecular motor JOURNAL J Biol Chem 289 (26), 18535-18548 (2014) PUBMED 24825904 REFERENCE 2 (bases 1 to 1099) AUTHORS Frobel J, Cadeddu RP, Hartwig S, Bruns I, Wilk CM, Kundgen A, Fischer JC, Schroeder T, Steidl UG, Germing U, Lehr S, Haas R and Czibere A. TITLE Platelet proteome analysis reveals integrin-dependent aggregation defects in patients with myelodysplastic syndromes JOURNAL Mol Cell Proteomics 12 (5), 1272-1280 (2013) PUBMED 23382103 REFERENCE 3 (bases 1 to 1099) AUTHORS Park I, Han C, Jin S, Lee B, Choi H, Kwon JT, Kim D, Kim J, Lifirsu E, Park WJ, Park ZY, Kim DH and Cho C. TITLE Myosin regulatory light chains are required to maintain the stability of myosin II and cellular integrity JOURNAL Biochem J 434 (1), 171-180 (2011) PUBMED 21126233 REFERENCE 4 (bases 1 to 1099) AUTHORS Shehadeh LA, Webster KA, Hare JM and Vazquez-Padron RI. TITLE Dynamic regulation of vascular myosin light chain (MYL9) with injury and aging JOURNAL PLoS One 6 (10), e25855 (2011) PUBMED 22003410 REMARK GeneRIF: consistent upregulation of the myosin light chain protein (Myl9) with age and injury REFERENCE 5 (bases 1 to 1099) AUTHORS Szczesna-Cordary D, Guzman G, Zhao J, Hernandez O, Wei J and Diaz-Perez Z. TITLE The E22K mutation of myosin RLC that causes familial hypertrophic cardiomyopathy increases calcium sensitivity of force and ATPase in transgenic mice JOURNAL J Cell Sci 118 (Pt 16), 3675-3683 (2005) PUBMED 16076902 REFERENCE 6 (bases 1 to 1099) AUTHORS Iwai N, Shimoike H and Kinoshita M. TITLE Genes up-regulated in hypertrophied ventricle JOURNAL Biochem Biophys Res Commun 209 (2), 527-534 (1995) PUBMED 7733921 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000119.1. On or before Dec 7, 2020 this sequence version replaced XM_006235401.2, NM_001100885.1. ##Evidence-Data-START## Transcript exon combination :: FQ229855.1, BC158548.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00132279, SAMD00132285 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-83 JACYVU010000119.1 18937085-18937167 84-292 JACYVU010000119.1 18939822-18940030 293-454 JACYVU010000119.1 18942217-18942378 455-1099 JACYVU010000119.1 18942804-18943448 FEATURES Location/Qualifiers source 1..1099 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="3" /map="3q42" gene 1..1099 /gene="Myl9" /note="myosin light chain 9" /db_xref="GeneID:296313" /db_xref="RGD:1311235" exon 1..83 /gene="Myl9" /inference="alignment:Splign:2.1.0" exon 84..292 /gene="Myl9" /inference="alignment:Splign:2.1.0" CDS 109..627 /gene="Myl9" /note="myosin regulatory light chain 9; myosin, light polypeptide 9, regulatory; myosin, light chain 9, regulatory" /codon_start=1 /product="myosin regulatory light polypeptide 9" /protein_id="NP_001094355.2" /db_xref="GeneID:296313" /db_xref="RGD:1311235" /translation="
MSSKRAKAKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDEYLEGMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILKHGAKDKDD"
misc_feature 163..615 /gene="Myl9" /note="Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]; Region: FRQ1; COG5126" /db_xref="CDD:227455" exon 293..454 /gene="Myl9" /inference="alignment:Splign:2.1.0" exon 455..1099 /gene="Myl9" /inference="alignment:Splign:2.1.0" ORIGIN
gagctccggagagcgggcgagctgctgcaagccagctttcgaagcaccgcagcaacgccaaggacttttcttctctgcagcagggaacccccaacacccaaagccaagatgtccagcaagagagccaaggccaagaccaccaagaagaggccccagagggctacgtccaatgtcttcgctatgtttgaccagtcccagatccaggagtttaaggaggccttcaacatgattgatcagaaccgtgatggcttcattgacaaggaggacctacatgacatgctggcctccctggggaagaaccccacggatgagtacctggagggtatgatgaacgaggccccgggacctatcaacttcaccatgttcctcactatgtttggggagaagctgaacggcacagaccccgaggacgtgatccgcaatgcctttgcctgctttgatgaggaagcctcagggttcatccacgaggaccacctgcgggagctgctcaccaccatgggcgaccgattcacggatgaggaggtggacgagatgtaccgtgaggcgcccattgataagaagggcaacttcaactatgtggagttcactcgcatcctcaagcacggcgccaaggacaaagacgactaggctcttcttagctgtcccaatgcctacaccccatcccagtcacctcctcaacacatacactctaccctccccatgaggagttagggtcccggctcccagggcaggaaatgagccattaagacgcacagggtgaggcaggggttccaccacggacccaggcactagaggaagggccacagtggggaggtgagccaagggtggggccagctagcaccaaagtgaaggaagccactgaagatggccaccctcagccatgccctcccattccagggctaccctgaggaagaaaacacccatgttctggtgttggacactaattcccagcatccccacaaaggtacacacccattcaccatgtcccttcagaggatgacagtctgcacttacacctatggagttgtcccagcacacccagaatgcatagagggacgctgcctgagggacaaattctctaatacaaggctgagcacca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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