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2024-03-28 18:59:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001100493            1217 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus N-acetylglucosamine-1-phosphate transferase
            subunit gamma (Gnptg), mRNA.
ACCESSION   NM_001100493 XM_001059345 XM_213240
VERSION     NM_001100493.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1217)
  AUTHORS   Encarnacao M, Kollmann K, Trusch M, Braulke T and Pohl S.
  TITLE     Post-translational modifications of the gamma-subunit affect
            intracellular trafficking and complex assembly of
            GlcNAc-1-phosphotransferase
  JOURNAL   J Biol Chem 286 (7), 5311-5318 (2011)
   PUBMED   21173149
REFERENCE   2  (bases 1 to 1217)
  AUTHORS   Qian Y, Lee I, Lee WS, Qian M, Kudo M, Canfield WM, Lobel P and
            Kornfeld S.
  TITLE     Functions of the alpha, beta, and gamma subunits of
            UDP-GlcNAc:lysosomal enzyme
            N-acetylglucosamine-1-phosphotransferase
  JOURNAL   J Biol Chem 285 (5), 3360-3370 (2010)
   PUBMED   19955174
REFERENCE   3  (bases 1 to 1217)
  AUTHORS   Gonzalez-Begne M, Lu B, Han X, Hagen FK, Hand AR, Melvin JE and
            Yates JR.
  TITLE     Proteomic analysis of human parotid gland exosomes by
            multidimensional protein identification technology (MudPIT)
  JOURNAL   J Proteome Res 8 (3), 1304-1314 (2009)
   PUBMED   19199708
REFERENCE   4  (bases 1 to 1217)
  AUTHORS   Raas-Rothschild A, Cormier-Daire V, Bao M, Genin E, Salomon R,
            Brewer K, Zeigler M, Mandel H, Toth S, Roe B, Munnich A and
            Canfield WM.
  TITLE     Molecular basis of variant pseudo-hurler polydystrophy
            (mucolipidosis IIIC)
  JOURNAL   J Clin Invest 105 (5), 673-681 (2000)
   PUBMED   10712439
REFERENCE   5  (bases 1 to 1217)
  AUTHORS   Lukong KE, Elsliger MA, Mort JS, Potier M and Pshezhetsky AV.
  TITLE     Identification of
            UDP-N-acetylglucosamine-phosphotransferase-binding sites on the
            lysosomal proteases, cathepsins A, B, and D
  JOURNAL   Biochemistry 38 (1), 73-80 (1999)
   PUBMED   9890884
REFERENCE   6  (bases 1 to 1217)
  AUTHORS   Madiyalakan,R., Chowdhary,M.S., Rana,S.S. and Matta,K.L.
  TITLE     Lysosomal-enzyme targeting: the phosphorylation of synthetic
            D-mannosyl saccharides by UDP-N-acetyl-glucosamine:lysosomal-enzyme
            N-acetylglucosamine-phosphotransferase from rat-liver microsomes
            and fibroblasts
  JOURNAL   Carbohydr Res 152, 183-194 (1986)
   PUBMED   3021329
REFERENCE   7  (bases 1 to 1217)
  AUTHORS   Lang,L., Reitman,M., Tang,J., Roberts,R.M. and Kornfeld,S.
  TITLE     Lysosomal enzyme phosphorylation. Recognition of a
            protein-dependent determinant allows specific phosphorylation of
            oligosaccharides present on lysosomal enzymes
  JOURNAL   J Biol Chem 259 (23), 14663-14671 (1984)
   PUBMED   6094568
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC158818.1.
            
            On or before Jun 4, 2008 this sequence version replaced
            XM_213240.4, XM_001059345.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158818.1, BC098716.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1217
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..1217
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /note="N-acetylglucosamine-1-phosphate transferase subunit
                     gamma"
                     /db_xref="GeneID:287134"
                     /db_xref="RGD:1311614"
     exon            1..68
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..937
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /note="N-acetylglucosamine-1-phosphotransferase, gamma
                     subunit; N-acetylglucosamine-1-phosphate transferase,
                     gamma subunit; N-acetylglucosamine-1-phosphotransferase
                     subunit gamma"
                     /codon_start=1
                     /product="N-acetylglucosamine-1-phosphotransferase subunit
                     gamma precursor"
                     /protein_id="NP_001093963.1"
                     /db_xref="GeneID:287134"
                     /db_xref="RGD:1311614"
                     /translation="
MAGRLTGFLMLLGLAAQGPAPTHAGKMKVVEEPNTFGLNNPFLPQASRLQPKREPSAVSGPPHLFRLAGKCFSLVESTYKYEFCPFHNVTQHEQTFRWNAYSGILGIWHEWEIVNNTFKGMWMTDGDSCHSRSRQSKVELTCGKTNRLAHVSEPSTCVYALTFETPLVCHPHSLLVYPTLSEALQQRWDQVEQDLADELITPQGYEKLLRALFEDAGYLKVPGETHPTQLAGDSKGLGLETLDICRKAHAELSREVQRLTSLLEQHGIPHTQPTETTHSQLLGQQLPVGEISEQLRGDPGLRGNIL"
     sig_peptide     17..88
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    221..403
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /note="Glucosidase II beta subunit-like protein; Region:
                     PRKCSH; pfam07915"
                     /db_xref="CDD:400321"
     exon            69..126
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /inference="alignment:Splign:2.1.0"
     exon            127..194
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /inference="alignment:Splign:2.1.0"
     exon            195..249
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /inference="alignment:Splign:2.1.0"
     exon            250..333
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /inference="alignment:Splign:2.1.0"
     exon            334..427
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /inference="alignment:Splign:2.1.0"
     exon            428..542
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /inference="alignment:Splign:2.1.0"
     exon            543..625
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /inference="alignment:Splign:2.1.0"
     exon            626..757
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /inference="alignment:Splign:2.1.0"
     exon            758..839
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /inference="alignment:Splign:2.1.0"
     exon            840..1176
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
tgcgaccctgggagcgatggcggggcggctgactggcttcctgatgttgctggggctcgcggcgcaggggcctgcgccgacacatgccgggaagatgaaggtggtggaggagcccaacactttcgggctgaataacccgttcttgccccaggcaagccgacttcagcccaagagagagccttcggctgtatctgggcccccgcatctcttcagactcgctggcaagtgcttcagcctagtggagtccacgtacaagtatgaattctgccctttccacaacgtgacccagcatgagcagaccttccgttggaacgcctacagcgggatccttggcatctggcatgagtgggagatcgtcaacaacaccttcaagggcatgtggatgactgatggggactcctgtcactcccggagccggcagagcaaggtggagctcacctgtggaaagaccaaccgactggcccacgtgtctgaaccaagcacctgcgtctatgcattgacatttgagacccctcttgtctgccatccccactctctgttagtgtatccaaccctgtcagaggccctgcagcagcgctgggaccaggtggaacaggacctggcggacgagctgatcacaccgcagggctatgagaagttgctgagggcactttttgaggatgctggctacttaaaggtcccaggagaaacccaccccacccagctggcaggagattccaagggcctggggcttgagactctggacatttgcagaaaggcacacgcagagctgtcacgggaggtacaaagactgacaagtctgctcgaacagcatggaatcccacacactcagcccacagaaaccacccactctcagctcctgggtcagcagctcccggtaggtgaaatctcagagcagttgcggggcgacccaggactacgagggaacatcctgtgagccaggcggccatgaagaacagaaatgttctgagccttgagtgtcttttcagagagaggccaagtgtggtctcagcagagtgcaccaaactggtgtggtgtggacatggcttcttttggcatcttctaggccagacaatatcactgacaagagggacctgctggccagcctttgttgtgcccaaagatccagacaaaataaagattcgaagttttaattaattccatactcataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]