2024-05-06 09:53:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001098667 3768 bp mRNA linear ROD 23-MAR-2023 DEFINITION Rattus norvegicus zinc finger and BTB domain containing 24 (Zbtb24), mRNA. ACCESSION NM_001098667 XM_039098906 XM_345114 VERSION NM_001098667.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 3768) AUTHORS Nagamachi A, Matsui H, Asou H, Ozaki Y, Aki D, Kanai A, Takubo K, Suda T, Nakamura T, Wolff L, Honda H and Inaba T. TITLE Haploinsufficiency of SAMD9L, an endosome fusion facilitator, causes myeloid malignancies in mice mimicking human diseases with monosomy 7 JOURNAL Cancer Cell 24 (3), 305-317 (2013) PUBMED 24029230 REFERENCE 2 (bases 1 to 3768) AUTHORS Edgar AJ, Dover SL, Lodrick MN, McKay IJ, Hughes FJ and Turner W. TITLE Bone morphogenetic protein-2 induces expression of murine zinc finger transcription factor ZNF450 JOURNAL J Cell Biochem 94 (1), 202-215 (2005) PUBMED 15526281 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000330.1. On or before Mar 10, 2021 this sequence version replaced XM_039098906.1, NM_001098667.1. ##Evidence-Data-START## Transcript exon combination :: BK001278.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00132273, SAMD00132280 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-150 JACYVU010000330.1 107599-107748 151-1130 JACYVU010000330.1 108276-109255 1131-1298 JACYVU010000330.1 112974-113141 1299-1382 JACYVU010000330.1 113533-113616 1383-1466 JACYVU010000330.1 114394-114477 1467-1548 JACYVU010000330.1 120102-120183 1549-3768 JACYVU010000330.1 122046-124265 FEATURES Location/Qualifiers source 1..3768 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="20" /map="20q12" gene 1..3768 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="zinc finger and BTB domain containing 24" /db_xref="GeneID:365590" /db_xref="RGD:1306951" exon 1..150 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /inference="alignment:Splign:2.1.0" exon 151..1130 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /inference="alignment:Splign:2.1.0" CDS 182..2314 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="zinc finger protein 450; bone morphogenetic protein-induced factor 1" /codon_start=1 /product="zinc finger and BTB domain-containing protein 24" /protein_id="NP_001092137.2" /db_xref="GeneID:365590" /db_xref="RGD:1306951" /translation="
MADTTPEPSGHLIVHSDTHSDTVLASLEDQRKKGFLCDITLIVENVHFRAHKALLAASSEYFSMMFAEEGEIGQSIYMLEGMVADTFGILLEFIYTGYLHASEKMTEQILATAQFLKVYDLVKAYTDFQNSHNSPKPPALNCSGTPVVVISNKKNDPLKRKRGRPRKTNSLQEGKSELAAEGEVQLRVNNSVQNRQNFVFKEDSVRLNEQTPKEKELEPAGEPGSVEEMPAEKDENSDPKARDGPGSQSRYSKRRTRRSVKLKDYKLSGDEDDQSTAKRATCGRQKRSSAPEARCKDCDRVFKYSHFLAIHQRRHTGERPFKCSECGKGFAQKHSLQVHTRMHTGERPYTCTVCSKALTTKHSLLEHMSLHSGQKSFTCDQCGKYFSQKRQLKSHYRVHTGHSLPECNHCHRKFMDVSQLKKHLRTHTGEKPFTCEICGKSFTAKSSLQTHIRIHRGEKPYSCSICGKCFSDSSAKRRHCVLHTGKKPFSCPECSLQFARLDNLKAHLKIHSKEKHASDSSSVSGSSADEVRNVLQLQPYQLSASGEQEIQLLVTDSVHNINFMPTPSQGVSIVAAESSQNMATDPAANITLLTQQPEQLQGLILSAQQEQTEHIQSLGMIGSQMDTSQTEPVHVITLSKETLEHLHAHQEQTSSSVPAADTGARASSPPSTRPGAELTQAPLTVPLDPSPGATVAGWPFGPSSYRSLKM"
misc_feature 221..571 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 24 (ZBTB24); Region: BTB_POZ_ZBTB24_ZNF450; cd18212" /db_xref="CDD:349521" misc_feature 632..715 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="propagated from UniProtKB/Swiss-Prot (Q3B725.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 788..1039 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="propagated from UniProtKB/Swiss-Prot (Q3B725.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 1064..>1198 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Region: SUF4-like; cd20908" /db_xref="CDD:411020" misc_feature 1064..1126 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 1064..1126 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1079..1081,1085..1087,1091..1093,1097..1102, 1109..1114,1121..1123,1163..1165,1169..1171,1181..1186, 1193..1198,1205..1207,1247..1249,1253..1255,1259..1261, 1265..1270,1277..1282,1289..1291) /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature order(1079..1081,1097..1099,1118..1120,1121..1123, 1145..1147,1166..1168) /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:411020" misc_feature <1139..1618 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 1148..1210 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1232..1294 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1316..1378 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1400..1462 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1415..1417,1421..1423,1427..1429,1433..1438, 1445..1450,1457..1459,1499..1501,1505..1507,1517..1522, 1529..1534,1541..1543,1583..1585,1589..1591,1595..1597, 1601..1606,1613..1618) /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1484..1546 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1568..1618 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1610..1681 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:433230" misc_feature 1652..1714 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2117..2254 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /note="propagated from UniProtKB/Swiss-Prot (Q3B725.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 1131..1298 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /inference="alignment:Splign:2.1.0" exon 1299..1382 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /inference="alignment:Splign:2.1.0" exon 1383..1466 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /inference="alignment:Splign:2.1.0" exon 1467..1548 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /inference="alignment:Splign:2.1.0" exon 1549..3768 /gene="Zbtb24" /gene_synonym="Bif1a; ZNF450" /inference="alignment:Splign:2.1.0" ORIGIN
tgcgcgcgcttccgggctgacagtcgccgggagccgggagcttacgcgcagtggtgccgggggcgtggatcggcgacaggcccggcttggtgtcctctgggcagcccggtggactgactgtagtaggaccccgccggccggccctgacagatttaaacctcttcggagtcttctggagaaaatggcggacacaacacctgagccttctgggcatcttattgtacactcagacactcacagtgacactgtcctggctagtcttgaggatcagaggaagaagggctttctttgcgatattactttgatcgtggagaatgtgcatttccgagctcataaagccctactggctgccagtagcgagtatttctcaatgatgtttgcggaagagggcgagattggccagtccatttatatgctggaaggcatggttgcagacacctttggtatcctgctggaatttatctatacaggttatctacatgccagtgagaaaatgacagaacaaatcctggctactgcccaattcttaaaagtctatgacctggtaaaggcttacaccgacttccagaatagccataactccccaaagccaccggccttgaactgctcaggtactccggtggtggttatttccaataagaagaatgatcctctgaaacggaaacggggaaggccaagaaaaaccaacagtttgcaggaagggaaatcggagctagctgcagagggagaggtgcagctaagagtgaacaattccgttcagaatagacaaaactttgtatttaaagaagacagtgtcagactgaatgagcagactcccaaagaaaaggagttggagcctgccggtgagccaggcagtgtggaggagatgcctgccgagaaggacgagaactctgaccccaaggctcgggatggaccgggaagccagagcaggtacagcaagcggaggactcgcaggtctgtcaagcttaaagactacaaacttagtggagatgaagatgaccagagcacagccaagagggcgacgtgtgggaggcaaaagcgttccagcgctcccgaggcccgctgtaaagactgcgacagagtctttaaatatagtcacttcttagccatccaccagagacgccacactggggagcgacccttcaaatgcagtgagtgtggaaagggctttgctcagaagcactccttgcaggttcacaccaggatgcacacgggggagcggccatacacctgcaccgtgtgcagcaaggcgctgaccaccaagcactccctgctggagcacatgagcctgcactcagggcagaagtcttttacctgtgatcagtgtggaaagtatttcagccagaaaagacagctaaagagccattatcgtgtccatacaggccactcactaccagaatgcaaccactgccatcgcaagtttatggatgtgtcccagctaaagaaacatctgcggacgcacacaggtgagaagccatttacttgtgaaatctgtgggaaatctttcacagcaaagagctccctccagacccacatcagaatccaccgaggagaaaagccgtactcctgcagcatctgcggcaaatgcttctctgactccagtgccaagaggagacactgcgtcttacatacgggcaaaaagcctttctcctgccctgagtgtagcctacagtttgctcgcctagacaatttgaaggctcacctgaaaatccacagcaaggagaagcacgcgtcagactccagcagtgtttctggcagtagtgctgacgaggtgcggaacgttcttcagctgcagccataccagctctccgcctcaggagagcaggagattcagcttctcgttaccgactctgtgcataacattaacttcatgcccactcccagccagggagttagcattgtagctgctgagagctctcagaacatggccacagacccggctgccaacatcaccctgctcacacagcagccggagcaactgcagggcctgattctttcagctcagcaggagcagacagagcacattcagagcctcggcatgattggaagccagatggacacctcccagaccgagccagtgcatgtgatcacactgtccaaggaaacgctggagcacctccatgctcaccaggagcaaacatccagctcagtgcctgcagcggacacaggagcccgagcctcctctcccccctccactaggccaggggcagagctgacacaggcacctctgactgttcccctggacccttcccctggagccacagtggcggggtggccctttgggccgtcctcttatagatccttaaagatgtgatctgccccttacttataatgggctccgtcagggcagagtctgtcttatctataacatcaactcatatttggcatttaaatattgatgagggtttccactttgatctactatctgctcttcaggattggtagttttccttcaggggcattgattttattatacttttctgtaagtgttgaatgtccacagccatagagtatggtctggtttagaaccaacagagtcgtgcctggggtgcatctttgggtatagtggggttatttctcttgggcagtatgcttgccattcccaaacgagtcagccctactgtaagtgatcacggcaagattcccctccaggaacttacccctaagagagcgcctcttggatttatctctgtgtggtacggcggggcgggctgaccgtgttgcactgaagctatcttgtcatgctcacaaaccatactcgcgacacaaaagccaaagtaactttaaaggttttgaatacaactttgcttcaaaacgtggatttatacatttttttttaaagaagcaggctattaaattttattttaaaaaatctccggggctggggatttagctcagtggtagagcgcttacctaggaagcgcaaggccctgggttcggtccccagctccgaaaaaaaagaaccaaaaaaaaaaaaaaaaaaaatctccaaagtatgaaactggatcaagatactcattccaaataaaccaaattttgtcagataatgatacttgatttttatcaaaaagaagtcttagttacctggaactttaaagtttctcagtgtaccataagtcctaaatgcactgctgacttgtacttgagcgcagcattctgagttccgcgtccatcgtccatcgtaggactcctgcaggaagaactgggctctgtctgcatggccgtccaggttaaccccactccacaccgcttccttctgagcctcagagcgaaagcagccgcctgcgtccatgatggagggactttcaagccaacactaagttatgtctgggttctgttttcacgatcactgcactagttgaattcttggacttctcaggaagctggcggccttgcttgaggaaagagatagggtgctgggaacacggtgcaggggaccgtcggtgtgaactcgtgtcttcacagccgtcattcttcttcccttcgtgtattcccagccaaatccactatatttctgcaaattaaagaactagacaattcttcacattagcaagaacatttttgttctatatgcaccgagttgttttattagacataatttataaattgaataccaagttgtagatacggatcggctgtgtaatgtgcactctgatctgactggcacaaatgctgcttccctttagtaatttagactcagtttagtcatttgagctatgtattcactgtgacgtgtgagcatggcttatatacaggccttatcccctg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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