ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2024-04-26 08:42:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001037793 7495 bp mRNA linear ROD 23-MAR-2023
DEFINITION Rattus norvegicus dedicator of cytokinesis 8 (Dock8), mRNA.
ACCESSION NM_001037793 XM_574645
VERSION NM_001037793.2
KEYWORDS RefSeq; RefSeq Select.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 7495)
AUTHORS Fan M, Wang J, Wang S, Li T, Pan H, Liu H, Xu H, Zhernakova DV,
O'Brien SJ, Feng Z, Chang L, Dai E, Lu J, Xi H, Yu Y, Zhang J, Wang
B and Zeng Z.
TITLE New Gene Variants Associated with the Risk of Chronic HBV Infection
JOURNAL Virol Sin 35 (4), 378-387 (2020)
PUBMED 32297155
REFERENCE 2 (bases 1 to 7495)
AUTHORS Alroqi FJ, Charbonnier LM, Keles S, Ghandour F, Mouawad P, Sabouneh
R, Mohammed R, Almutairi A, Chou J, Massaad MJ, Geha RS, Baz Z and
Chatila TA.
TITLE DOCK8 Deficiency Presenting as an IPEX-Like Disorder
JOURNAL J Clin Immunol 37 (8), 811-819 (2017)
PUBMED 29058101
REFERENCE 3 (bases 1 to 7495)
AUTHORS Xu X, Han L, Zhao G, Xue S, Gao Y, Xiao J, Zhang S, Chen P, Wu ZY,
Ding J, Hu R, Wei B and Wang H.
TITLE LRCH1 interferes with DOCK8-Cdc42-induced T cell migration and
ameliorates experimental autoimmune encephalomyelitis
JOURNAL J Exp Med 214 (1), 209-226 (2017)
PUBMED 28028151
REFERENCE 4 (bases 1 to 7495)
AUTHORS Arndt T, Wedekind D, Jorns A, Tsiavaliaris G, Cuppen E, Hedrich HJ
and Lenzen S.
TITLE A novel Dock8 gene mutation confers diabetogenic susceptibility in
the LEW.1AR1/Ztm-iddm rat, an animal model of human type 1 diabetes
JOURNAL Diabetologia 58 (12), 2800-2809 (2015)
PUBMED 26363782
REMARK GeneRIF: The Dock8 mutation gave rise to a new type 1 diabetes rat
model with very close similarity to type 1 diabetes in humans
REFERENCE 5 (bases 1 to 7495)
AUTHORS Flesch IE, Randall KL, Hollett NA, Di Law H, Miosge LA, Sontani Y,
Goodnow CC and Tscharke DC.
TITLE Delayed control of herpes simplex virus infection and impaired
CD4(+) T-cell migration to the skin in mouse models of DOCK8
deficiency
JOURNAL Immunol Cell Biol 93 (6), 517-521 (2015)
PUBMED 25776845
REFERENCE 6 (bases 1 to 7495)
AUTHORS Harada Y, Tanaka Y, Terasawa M, Pieczyk M, Habiro K, Katakai T,
Hanawa-Suetsugu K, Kukimoto-Niino M, Nishizaki T, Shirouzu M, Duan
X, Uruno T, Nishikimi A, Sanematsu F, Yokoyama S, Stein JV, Kinashi
T and Fukui Y.
TITLE DOCK8 is a Cdc42 activator critical for interstitial dendritic cell
migration during immune responses
JOURNAL Blood 119 (19), 4451-4461 (2012)
PUBMED 22461490
REFERENCE 7 (bases 1 to 7495)
AUTHORS Lambe T, Crawford G, Johnson AL, Crockford TL, Bouriez-Jones T,
Smyth AM, Pham TH, Zhang Q, Freeman AF, Cyster JG, Su HC and
Cornall RJ.
TITLE DOCK8 is essential for T-cell survival and the maintenance of CD8+
T-cell memory
JOURNAL Eur J Immunol 41 (12), 3423-3435 (2011)
PUBMED 21969276
REFERENCE 8 (bases 1 to 7495)
AUTHORS Dasouki M, Okonkwo KC, Ray A, Folmsbeel CK, Gozales D, Keles S,
Puck JM and Chatila T.
TITLE Deficient T Cell Receptor Excision Circles (TRECs) in autosomal
recessive hyper IgE syndrome caused by DOCK8 mutation: implications
for pathogenesis and potential detection by newborn screening
JOURNAL Clin Immunol 141 (2), 128-132 (2011)
PUBMED 21763205
REFERENCE 9 (bases 1 to 7495)
AUTHORS Randall KL, Chan SS, Ma CS, Fung I, Mei Y, Yabas M, Tan A,
Arkwright PD, Al Suwairi W, Lugo Reyes SO, Yamazaki-Nakashimada MA,
Garcia-Cruz Mde L, Smart JM, Picard C, Okada S, Jouanguy E,
Casanova JL, Lambe T, Cornall RJ, Russell S, Oliaro J, Tangye SG,
Bertram EM and Goodnow CC.
TITLE DOCK8 deficiency impairs CD8 T cell survival and function in humans
and mice
JOURNAL J Exp Med 208 (11), 2305-2320 (2011)
PUBMED 22006977
REFERENCE 10 (bases 1 to 7495)
AUTHORS Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA.
TITLE Defining the membrane proteome of NK cells
JOURNAL J Mass Spectrom 45 (1), 1-25 (2010)
PUBMED 19946888
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
JACYVU010000047.1.
On Sep 4, 2008 this sequence version replaced NM_001037793.1.
Sequence Note: The RefSeq transcript and protein were derived from
genomic sequence to make the sequence consistent with the reference
genome assembly. The genomic coordinates used for the transcript
record were based on alignments.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
RNAseq introns :: single sample supports all introns SAMEA5756307,
SAMEA5760383 [ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
RefSeq Select criteria :: based on conservation, expression,
longest protein
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-172 JACYVU010000047.1 9670102-9670273
173-275 JACYVU010000047.1 9715173-9715275
276-451 JACYVU010000047.1 9724848-9725023
452-523 JACYVU010000047.1 9729068-9729139
524-647 JACYVU010000047.1 9741426-9741549
648-860 JACYVU010000047.1 9743118-9743330
861-946 JACYVU010000047.1 9749318-9749403
947-1013 JACYVU010000047.1 9754512-9754578
1014-1163 JACYVU010000047.1 9757762-9757911
1164-1244 JACYVU010000047.1 9762198-9762278
1245-1404 JACYVU010000047.1 9763285-9763444
1405-1541 JACYVU010000047.1 9765058-9765194
1542-1635 JACYVU010000047.1 9767625-9767718
1636-1798 JACYVU010000047.1 9768808-9768970
1799-1916 JACYVU010000047.1 9783052-9783169
1917-1987 JACYVU010000047.1 9784879-9784949
1988-2126 JACYVU010000047.1 9785961-9786099
2127-2228 JACYVU010000047.1 9786699-9786800
2229-2324 JACYVU010000047.1 9789531-9789626
2325-2559 JACYVU010000047.1 9789940-9790174
2560-2724 JACYVU010000047.1 9792155-9792319
2725-2897 JACYVU010000047.1 9793223-9793395
2898-2993 JACYVU010000047.1 9799753-9799848
2994-3089 JACYVU010000047.1 9802792-9802887
3090-3239 JACYVU010000047.1 9809680-9809829
3240-3353 JACYVU010000047.1 9811524-9811637
3354-3509 JACYVU010000047.1 9815444-9815599
3510-3649 JACYVU010000047.1 9817510-9817649
3650-3819 JACYVU010000047.1 9821178-9821347
3820-3959 JACYVU010000047.1 9823642-9823781
3960-4142 JACYVU010000047.1 9825534-9825716
4143-4272 JACYVU010000047.1 9826047-9826176
4273-4360 JACYVU010000047.1 9826888-9826975
4361-4457 JACYVU010000047.1 9832217-9832313
4458-4592 JACYVU010000047.1 9834353-9834487
4593-4745 JACYVU010000047.1 9835315-9835467
4746-4904 JACYVU010000047.1 9837066-9837224
4905-5005 JACYVU010000047.1 9838176-9838276
5006-5198 JACYVU010000047.1 9839442-9839634
5199-5342 JACYVU010000047.1 9844616-9844759
5343-5474 JACYVU010000047.1 9845922-9846053
5475-5609 JACYVU010000047.1 9846466-9846600
5610-5699 JACYVU010000047.1 9847845-9847934
5700-5936 JACYVU010000047.1 9851302-9851538
5937-6080 JACYVU010000047.1 9854931-9855074
6081-6187 JACYVU010000047.1 9856255-9856361
6188-6358 JACYVU010000047.1 9861560-9861730
6359-7495 JACYVU010000047.1 9862131-9863267
FEATURES Location/Qualifiers
source 1..7495
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
/chromosome="1"
/map="1q51"
gene 1..7495
/gene="Dock8"
/note="dedicator of cytokinesis 8"
/db_xref="GeneID:499337"
/db_xref="RGD:1561588"
exon 1..172
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
CDS 120..6419
/gene="Dock8"
/codon_start=1
/product="dedicator of cytokinesis protein 8"
/protein_id="NP_001032882.2"
/db_xref="GeneID:499337"
/db_xref="RGD:1561588"
/translation="
MATLPSAERRAFALKINRYSSSEIRKQFTLPPNLGQYHRHSLSTSGFPSLQLPQLYEPVEPVDFEGLVMTHLNSLDAELAQELGDLTDDDLHVAFTPKECRTLQHSLPEEGVELDPHVRDCVQTYIREWLIVNRKNQGSPEFCSFRKTGSRRDFHKTLQKQTFESETLECSEPATQTGPRHRFNVLCDVSGKGPITSCDFDLRSLQPDERLENLLQLSAEDFEKEKEEARKTNRTAELFALYPSVDEEDAVEIRPVPECPKEHLGNRILVKVLTLKFEIEIEPLFASIALYDVKERKKISENFHCDLNSDQFKGFLRAHTPSVDPSSQARSAVFSVTYPSSDIYLVVKIEKVLQQGEIADCAEPYMIIKESDGGKSKEKVEKLKLQAESFCQRLGKYRMPFAWAPISLASFFNVSTLERESTDLEPGAGRNSVGERRSLSQSRRPSERTLSFEENGVGSNFKTTTLATNIFFKQEGDRLSDEDLFKFLADYKRSSSLQRRVKSIPGSLRLEIAPAPDVMNCCLTPEMLPVKPFPENRTRPHKEILEFPIREVYVPHTVYRNLLYVYPQRLNFANKLASARNITIKIQFMCGEDPSNAMPVIFGKSSGPEFLQEVYTAITYHNKSPDFYEEVKIKLPAKLTVNHHLLFTFYHISCQQKQGASGESLLGYSWLPILLNERLQTGSYCLPVALEKLPPNYSIHSAEKVPLQNPPIKWAEGHKGVFNIEVQAVSSVHTQDNHLEKFFTLCHSLESQVTFPIRVLDQKITENTLEHELKLSIICLNSSRLEPLVLFLHLVLDKLFQLSVQPMVIAGQTANFSQFAFESVVAIANSLHNSKDLRKDQHGRNCLLASYVHYVFRLPELHRDAPKSGGPTAVVPDPRYHTYGRTSAAAVSSKLMQARVMSSSNPDLAGTHCAADEEVKNIMSSKIADRNCSRMSYYCSGNSDVPGSTAAPRPVSKKHFHEELALQMVVSTGLVRETVFKYAWFFFELLVKSMAQYVHNLDKRDSFRRTRFSDRFKDDITTIVNVVTSEIAALLVKPQKESEQAEKINISLAFFLYDLLSIMDRGFVFNLIKHYCTQLSAKLNTLPTLISMRLEFLRILCSHEHYLNLNLLFMNPDTAPASPCPSISSQNSSSCSSFQDQKIASMFDLTPEYRQQHFLTGLLFTELAVALDAEGDGISRVQRKAVSAIHSLLSSHDLDPRCLKPEVKVKIAALYLPLVGIILDALPQLYDFTDARSGRSRASGSYEEQDVANGINQNVALAIAGNHFNLKTSGAMLSSLPYKQYNMLNADTTRHLMVCFLWIMKNADQSLIRKWIADLPSMQLNRILDLLFICVSCFEYKGKQSSDKVSNQVLQKSRDVKAKLEEALLRGEGARGEMMRRRIPGTDRFPGLNENLRWRKEQTQWRQANEKLDKTKAELDQEALISGNLATEANLIILDMQENIIQASSSLDCKDSLLGGVLRVLVNSLSCDQSTTYLTHCFATLRALIAKFGDLLFEEEMEQCADLCQRVLHHCSSSMDVTRSQACATLYLLMRFSFGATSNFARVKMQVTMALASLVGKAPDFNEEHLRKSLRTILAYSEEDTAMRATLFPTQVEELLCNLNSILYDTVKMREFQEDPEMLMDLMYRIAKSYQASPDLRLTWLQNMAEKHTKRKCFTEAAMCLVHAAALVAEYLSMLEDHSYLPVGSVSFQNISSNVLEESAVSDDTLSPDEDGVCSGRYFTESGLVGLLEQAAELFSTGGLYETVNEVYKLVIPILEAHRDFRKLTSTHDKLQKAFDNIINKDHKRMFGTYFRVGFYGSKFGDLDEQEFVYKEPAITKLPEISHRLEGFYGQCFGAEFVEVIKDSTPVDKTKLDPNKAYIQITFVEPYFDEYEMKDRVTYFEKNFNLRRFMYTTPFTLEGRPRGELHEQHRRNTVLTTMHAFPYIKTRIRVSQKEEFVLTPIEVAIEDMKKKTLQLAVATHQEPPDAKMLQMVLQGSVGATVNQGPLEVAQVFLAEIPADPKLYRHHNKLRLCFKEFIMRCGEAVEKNRRLITAEQREYQQELKKNYNRLKDSLRPMIERKIPELYKPIFRVDSQKRDSFHRSSFRKCETQLSQGS"
misc_feature 285..617
/gene="Dock8"
/note="Domain of unknown function (DUF3398); Region:
DUF3398; pfam11878"
/db_xref="CDD:432155"
misc_feature 1794..2336
/gene="Dock8"
/note="C2 domains found in Dedicator Of CytoKinesis (Dock)
class C proteins; Region: C2_Dock-C; cd08696"
/db_xref="CDD:176078"
misc_feature 5025..6290
/gene="Dock8"
/note="Dock Homology Region 2, a GEF domain, of Class C
Dedicator of Cytokinesis 8; Region: DHR2_DOCK8; cd11701"
/db_xref="CDD:212574"
misc_feature order(5376..5378,5406..5408,5412..5417,5421..5426,
5433..5438,5442..5447,5454..5459)
/gene="Dock8"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:212574"
misc_feature order(5496..5498,5502..5504,5571..5573,5580..5591,
5595..5600,5655..5663,5712..5720,5802..5813,5841..5846,
5853..5855,5859..5861,5970..5975,5982..5984,6030..6035,
6039..6044,6051..6059,6066..6074,6081..6086,6093..6095,
6177..6179,6243..6245,6252..6254)
/gene="Dock8"
/note="Rac/Cdc42 binding site [polypeptide binding]; other
site"
/db_xref="CDD:212574"
misc_feature 6066..6083
/gene="Dock8"
/note="nucleotide sensor; other site"
/db_xref="CDD:212574"
exon 173..275
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 276..451
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 452..523
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 524..647
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 648..860
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 861..946
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 947..1013
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 1014..1163
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 1164..1244
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 1245..1404
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 1405..1541
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 1542..1635
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 1636..1798
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 1799..1916
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 1917..1987
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 1988..2126
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 2127..2228
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 2229..2324
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 2325..2559
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 2560..2724
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 2725..2897
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 2898..2993
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 2994..3089
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 3090..3239
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 3240..3353
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 3354..3509
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 3510..3649
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 3650..3819
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 3820..3959
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 3960..4142
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 4143..4272
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 4273..4360
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 4361..4457
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 4458..4592
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 4593..4745
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 4746..4904
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 4905..5005
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 5006..5198
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 5199..5342
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 5343..5474
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 5475..5609
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 5610..5699
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 5700..5936
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 5937..6080
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 6081..6187
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 6188..6358
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
exon 6359..7495
/gene="Dock8"
/inference="alignment:Splign:2.1.0"
ORIGIN
ccgcgcggctgacagatgaagctggcgacggacgcgccgggcgctgcagcggctgtgcgttcgggtcccgtccctccgcctccctgcgagccccgaggtcgtggagcggcgcgccggccatggccacgctaccgagcgccgagcgccgcgccttcgcgctcaagatcaacaggtattcatcatcagaaataaggaagcagtttacgctcccgcccaacctcggacagtaccatcggcacagcctcagtacctctggtttcccttctcttcagctacctcagctgtatgagcccgttgagcctgtggactttgaaggacttgtgatgacgcacttaaacagcttggatgcagagctggcccaggagctgggggacctcaccgatgacgacctgcatgtggccttcacacccaaggagtgtaggactttgcagcactctctgccagaggaaggagttgaactggatcctcacgtcagggactgtgttcagacctatattcgagagtggctgattgtgaaccggaaaaaccaaggaagtccagagttttgcagcttcagaaagactggatctcgcagagattttcacaagacgcttcagaaacagacgtttgagtcagaaaccttggagtgcagtgaaccggccactcagacgggaccccgccatcgcttcaacgtgctgtgtgatgtgtctgggaagggccccatcacttcttgtgacttcgacctccgcagcctgcagcctgacgagcggctggaaaacctgcttcagctgagtgctgaggactttgagaaggagaaagaggaggcccgaaagaccaatcggacggctgagctcttcgccctctatccatccgtagatgaggaggatgctgtggaaatccgtccagtaccagaatgtcctaaggaacatctgggcaacagaatattggtgaaggtgctgaccctgaagtttgagattgaaattgaacctctgtttgccagtattgccctctatgatgttaaagaaaggaaaaagatctcagaaaacttccactgtgacctgaactccgaccagttcaaagggtttctgcgagctcacacaccctcggttgacccgtcgagtcaggcaaggtctgcagtgttctcggtcacctacccatcttcagacatctacctggttgtcaagattgaaaaggtccttcagcaaggagagatcgcagactgtgcagaaccctacatgatcatcaaagaaagcgatggtggaaagagtaaagaaaaggttgaaaaactaaaactccaagctgaatccttctgccaacgtttggggaaataccggatgcccttcgcctgggcccccatcagcttagcaagcttcttcaacgtctccacccttgaaagggagagcacagacttggagcctggggctgggagaaactctgtgggggagaggaggagtttgtcccagtccaggaggccttctgagagaaccctctcctttgaggaaaatggagttggatccaacttcaaaaccaccaccttggccactaacatcttcttcaagcaggagggagatcgccttagtgatgaagacttgttcaagtttttagctgactacaagagatcttcgtccctacagcgaagagtgaaatccatcccaggctcacttaggctggagatagccccagctcctgacgtgatgaactgctgcctgacacccgagatgctgccggtcaaacccttccctgaaaatcggacgcgtccccacaaggagattttggaatttccaatccgggaagtgtatgttccccacaccgtgtacagaaaccttctgtacgtatacccacagagactgaactttgctaacaagctagcatccgcccggaacattacaataaagattcagtttatgtgtggagaagaccccagcaatgctatgcctgtcatctttgggaagtccagtgggcctgaatttctgcaggaagtgtacacagctattacataccataataagtctcccgacttttatgaagaagtaaagattaagcttccggccaagctcacagtgaatcaccacctcctcttcaccttctaccacatcagctgtcagcagaagcaaggcgcctctggagaaagccttctgggatactcgtggctgccgattctcctgaacgaacgtcttcaaaccggatcctactgtctaccagttgccttggaaaaactaccacctaactactccatacattctgctgagaaagtccctttacagaatcctcccattaagtgggccgagggccataagggggtatttaatattgaagtgcaagctgtttcctccgttcacacccaggataaccacctggagaagttcttcaccctttgccactccctggagagccaggtgaccttccctatccgcgtgctggaccagaagatcacggagaacacgctggagcatgagcttaagctcagcatcatctgcctcaactcctcccgcctggagcccctcgtgctcttcctccacctggtgctggataagctcttccagctctctgtgcagcccatggtcatcgctggccaaacagcaaacttctcccagtttgccttcgaatctgtggtggccattgccaatagccttcacaacagcaaggacctgaggaaggaccagcacgggaggaactgcctgctggcctcctatgtgcactacgtgttccggctgcccgagctgcacagggatgcacccaagtcaggtggccccaccgccgtagtccctgacccccgataccacacatatggacgcacgtctgccgctgcagtgagttcaaagctgatgcaggcccgtgtgatgagcagcagtaacccagacctggctgggacacactgtgcagcagatgaggaggttaagaacatcatgtcttccaagattgctgatcgcaactgcagccggatgtcttactattgctctggcaacagtgacgttccaggttcaactgcagccccaaggccagtcagcaaaaagcatttccatgaggagcttgccctgcagatggtggtcagcactggactagtgagagaaaccgtcttcaagtacgcctggttcttctttgagcttctggtgaaaagcatggcacagtacgtccataacctggataaacgggacagttttcggaggactcgtttttccgaccgcttcaaggatgacataactaccattgttaatgtggtcacctcggagatagcagcccttctagtgaaacctcagaaggaaagtgagcaggccgagaagatcaacatcagcctggccttcttcctgtatgacctcctctcaatcatggacagaggcttcgtgttcaacctcatcaagcattactgcactcagctatcagccaagcttaacacccttccaaccctcatttccatgcggctggagttcctgagaatcctctgcagccacgagcactacctcaacttgaacctgctcttcatgaatcctgacaccgcaccagcctctccctgtccctccatatcctcccagaactcaagctcctgctccagtttccaggaccaaaagattgccagcatgttcgatctgaccccagagtaccgccagcagcacttcctcacagggctcctcttcacagaactggccgttgccctggatgctgaaggggacggaattagcagagtacagagaaaagccgtgagtgccatccacagccttctgagttctcacgacctggatccacggtgtctcaaaccagaagtgaaagtcaaaatcgctgccctttacctgccgttggtcggcatcattctggatgcgctgccacagctctatgactttacagatgctcgcagtggaaggagccgtgccagtggctcatatgaagaacaagatgtggccaatggaatcaaccagaatgtggccctggccatagcagggaatcattttaatttgaagaccagcggagcaatgctgtcttccttgccctataagcagtacaacatgctgaacgcggacactacccgccacctcatggtctgctttctgtggatcatgaaaaacgcggatcagagcctcatcaggaagtggatcgccgacctgccttccatgcagctcaacaggattctagacctgctgttcatctgtgtctcctgctttgaatacaagggaaagcagagttctgacaaagtcagtaaccaggtcctgcagaagtcaagagatgtcaaggccaagttggaagaagccctgctccgtggggaaggagcccggggggagatgatgcgacgtcggattccaggcactgaccggtttccaggcctaaatgagaatctgaggtggaggaaggagcagacacagtggcggcaagctaacgagaagctggacaaaacaaaggcagagttagatcaagaagccttgatcagtggcaacctggctacagaggctaatttgatcatactggacatgcaggaaaacatcatccaggcaagctcctccctggactgtaaagacagcctgctgggaggtgtcctccgggtcctggtgaattctctgagctgtgatcagagcaccacctacctgactcactgttttgcaactctccgagccctcatcgccaagtttggagacctgctgttcgaggaggaaatggagcagtgtgctgacctgtgtcagcgggtgctccatcactgcagcagtagcatggatgtcacccggagccaagcctgcgccaccctctatctactcatgcggttcagcttcggagccaccagtaactttgcaagagtaaagatgcaggtaaccatggcactggcatccttggtaggcaaagcaccagacttcaatgaggagcacctgagaaagtccttaaggaccattctggcctattcagaagaggacacggccatgcgggcaactctttttcccacgcaggtggaggagcttctctgcaatctcaacagcattttatacgacacagtgaagatgagggaattccaggaggaccctgagatgctcatggacctcatgtacagaattgccaagagctaccaggcatcccctgacctgcggctgacctggctccagaacatggcagagaaacacactaagaggaagtgcttcacagaggccgccatgtgcctggtgcatgcagcagccttggtggcagagtacctgagcatgctggaggaccacagttacctgcctgtgggcagcgtcagctttcagaatatttcttccaatgtgcttgaggaatctgcagtctccgatgacaccttgtcacctgatgaggacggtgtatgctctggtcgctacttcactgagagtggcctggtgggcctcctggagcaggctgcagagctcttcagcacgggaggcttgtacgagacagttaatgaggtctacaagctggtcattcccatcctggaagcacatagagatttccggaagctgacctctactcacgacaagctgcagaaggcctttgacaacatcatcaacaaggaccataagaggatgtttggaacttacttccgagttggtttctacggatccaaatttggggatttggatgagcaggaatttgtgtacaaggaacctgcaattacaaagctccccgagatctcacatagactagagggattttatggccagtgttttggtgccgagtttgtggaagtgataaaggactctactcccgtggataaaaccaagttggatcctaacaaggcctacatacagatcacttttgtggagccttactttgatgagtatgagatgaaagacagggtgacctacttcgagaagaatttcaaccttcggaggttcatgtacaccacccccttcaccctggaggggaggccccggggagagctgcacgagcagcatcgcaggaacacggtgctcaccaccatgcatgccttcccctacatcaagaccaggatccgagtcagccagaaagaggagttcgtcttgactccgattgaagttgccattgaagacatgaagaagaagaccttgcagttagcggtggccactcaccaggagccccctgacgcgaagatgctccagatggtactgcaaggctctgtgggagccaccgtgaatcagggcccactggaggtggcccaagtgttcttggctgaaattccggctgacccaaaactctaccggcatcacaacaagctgaggttatgcttcaaggagttcataatgcgatgcggtgaggccgtagagaagaacaggagactcattaccgcagagcagcgggagtaccagcaggaactcaagaagaactacaacaggctgaaggacagcctcaggcccatgattgagcggaaaatcccagagctctacaagcccatattcagggttgacagtcaaaagagggactctttccacagatctagtttcaggaaatgtgaaacccagttgtcacagggcagctgaaaaaagccacctttgcctgtagtgactggggccccactacctggaaggactcactggtacgtccccagcagccacccaagactgactgtccagccagtgctctggaaacttgtatttattaaaatatttttcatactgctgtacaaacaaggcctaagctgtttctgccgagtggccggtcatggtcctcccatgaagtgatgtcttctgacctatatctgaattcctaaaataaactcaaaccgtggacggaagagtggaccactgtcctgcagcctactccaagtgagcttcactcatcccttcagtgagaagaaaagataaactccagagaagtgaaacgttttccaaatcatctgtgagaggaagtcctacaggaagcctggtctcatgctggctgggaatctgggaatagatggatcgatcactctacaagctgctttttgcccctcctgcattgctggactgagtgccatctagttatctctgcgttgttgcttctgttaagctgagtgagcccacctttatccaggggacagttgtacaggacagtacagatcacccggccacacggcgctgacagcgcattccccagagcggaagcagttctcccagaacgttttgctggtttcctatacgcttgctctcactgtctcctttctcttctctgggataaggtgatttatttttttttatttttttttataggtgatttttatacaagggtaatactctgccttcgctccagaacattcgtcctctgtgtgctacaaaatatatgcttttgattctttttacagtgtattttaggaaaaagaaaaacaaagctatggtttgagaattaaattatatattttttcatacaactcacgaccttaacgaatactaaagatggaatacagacggcaagcaagtgggaagctggcacccacctttagtcctagctctcggaggccagcctggtcgacagagcgagctccaggacagccagatggacacagtgagaccaagtctcataaataaataaataaataaataaataaataaataaataaatcaatcaatcaatcaatcaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]