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2024-04-20 16:13:19, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Rattus norvegicus crystallin, gamma F (Crygf), transcript variant X2, mRNA. (438 bp)
misc_feature 7..246 /gene="Crygf" /gene_synonym="Cryg6; Len" /note="Beta/gamma crystallins; Region: XTALbg; smart00247" /db_xref="CDD:214583" ORIGIN // atgggaaagatcaccttctatgaggaccgaggcttccagggccgccactatgagtgcagcacagaccactccaacctgcagccctacttcagccgctgcaactctgtgcgcgtggacagtggctgctggatgctctatgagcagcccaacttcacaggctgccagtatttccttcgtcgcggggagtaccctgactaccagcagtggatgggtttcagcgactctgtccgctcctgccacctcatcccccacaatcaggatctacgagcgagaggactacagaggccagatggtggagatcacagacgactgcccccacctgcaggaccgcttccacttcagtgacttccactccttccacgtgatagagggctactgggtcctctacgagatgcccaactaccgggggcggcagtacctgctgaggcccagggaata
position 91
Synonym: Cryg6; Len
XM_039084220.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus crystallin, gamma E (Cryge), mRNA. (633 bp)
rat lens gamma-crystallin cDNAs suggests duplications of a primordial gene JOURNAL Proc Natl Acad Sci U S A 79 (22), 6876-6880 (1982) PUBMED 6294661 acaaccaacagcaccatcccatccgacctgcaaacaacagccatggggaagatcaccttctatgaggaccgcggcttccagggccgccactatgagtgcagcacagaccactccaacctgcagccctacttcagccgctgcaactctgtgcgcgtggacagtggctgctggatgctctatgagcagcccaacttcacaggctgccagtatttccttcgtcgcggggactaccctgactaccagcagtggatgggtttcagcgactctgtccgctcctgccgcctcatcccccactccagctctcacagaatcaggatctacgagcgagaggactacagaggccagatggtggagatcacagacgactgcccccacctgcaggaccgcttccacttcagtgacttccactctttccacgtgatggagggctactgggtcctctatgagatgc...
position 133
Synonym: Cryg5; Len
NM_173289.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus crystallin, gamma F (Crygf), transcript variant X1, mRNA. (528 bp)
XTALbg; smart00247" /db_xref="CDD:214583" misc_feature 268..513 /gene="Crygf" /gene_synonym="Cryg6; Len" /note="Beta/Gamma crystallin; Region: Crystall; pfam00030" /db_xref="CDD:425430" ORIGIN // atgggaaagatcaccttctatgaggaccgaggcttccagggccgccactatgagtgcagcacagaccactccaacctgcagccctacttcagccgctgcaactctgtgcgcgtggacagtggctgctggatgctctatgagcagcccaacttcacaggctgccagtatttccttcgtcgcggggagtaccctgactaccagcagtggatgggtttcagcgactctgtccgctcctgccacctcatcccccacaaggcgggctctcacagaatcaggatctacgagcgagaggactacagaggccagatggtggagatcacagacgactgcccccacctgcaggaccgcttccacttcagtgacttccactccttccacgtgatagagggctactgggtcctcta...
position 91
Synonym: Cryg6; Len
XM_039084219.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus crystallin, gamma F (Crygf), mRNA. (684 bp)
within the rat gamma-crystallin gene family JOURNAL J Mol Biol 189 (1), 37-46 (1986) PUBMED 3783678 gttcctgccaacgcagcagacctcctgctatatatatagaccctgctcccagccctacacaaccaacagcaccatcccatccgcaaacaccagccatgggaaagatcaccttctatgaggaccgaggcttccagggccgccactatgagtgcagcacagaccactccaacctgcagccctacttcagccgctgcaactctgtgcgcgtggacagtggctgctggatgctctatgagcagcccaacttcacaggctgccagtatttccttcgtcgcggggagtaccctgactaccagcagtggatgggtttcagcgactctgtccgctcctgccacctcatcccccactccagctctcacagaatcaggatctacgagcgagaggactacagaggccagatggtggagatcacagacgactgcccccacctgcaggaccgcttccacttcagtgacttccactccttccacgtgatagagggctactgggtcctctacgag...
position 186
Synonym: Cryg6; Len
NM_001109557.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus crystallin, gamma D (Crygd), mRNA. (634 bp)
J.G. TITLE Concerted and divergent evolution within the rat gamma-crystallin gene family JOURNAL J Mol Biol 189 (1), 37-46 (1986) PUBMED 3783678 acactcaactgaaacctcccatccgacccgcaaacaacagccatggggaagatcaccttctatgaggaccgcggcttccagggccgccactatgagtgcagcacagaccactccaacctgcagccctacttcagccgctgcaactctgtgcgcgtggacagtggctgctggatgctctatgagcagcccaacttcacaggctgccagtacttccttcgtcgcggggactaccctgactaccagcagtggatgggtttcagcgactctgtccgctcctgccgcctcatcccccacgccggctcccacaggatcagactgtacgagagggaagattacagaggccagatggtagagttcactgaggactgcccctctctccaggaccgattccacttcaatgagatctactccctcaatgtgctggagggctgctgggtcctctatgagatgaccaa...
position 133
Synonym: Cryg4; Len
NM_033095.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/rn/seq%3aAGCCGCTGCAACTCTGTGCGCGTGG
lang : en | div : | spe : rn | query_string : seq:AGCCGCTGCAACTCTGTGCGCGTGG | format : html | download : 

0.000 | 0.000 | search_start;
0.086 | 0.086 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:AGCCGCTGCAACTCTGTGCGCGTGG)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.098 | 0.012 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:AGCCGCTGCAACTCTGTGCGCGTGG)?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.098 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]