GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2021-01-17 00:24:28, GGRNA : RefSeq release 203 (Nov, 2020)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Rattus norvegicus regenerating islet-derived 3 alpha (Reg3a), transcript variant 2, mRNA. (805 bp)
tcaagcagatctggcctgccagaagagaccttcaggacaccttgtgtctattcttagtggaggtgaggcttcctttgtgtcttccctggtgacaggcagagtgaacaacaaccaagacatctggattgggctccatgatccaacaatgggtcaacaacccaatggaggtggatgggagtggagtaactctgacgtactgaattatctcaactgggatggggatccttcctctactgtcaaccgtggtaactgtggcagtctaacagctacctcggagtttctgaagtggggagaccatcactgtgatgtggaattaccttttgtctgcaagttcaagcagtagacccgcagcatcctgagtttatcatgaaggtcaccgtgacaagggatgtacatgacaaggctgtacttgcttcacagtcctgcatcagacttgctgttatgattttccatcttccttcatccgttttcttccccccatttcaggctttttttggtatagttcctgctttgcaatcttgaagataaataatacataaaatcttttattttaaaaaaaaaaaaaaaaa
position 315 339 345 471 489 525 531 555 567 585 597 609 639 657 735 741
Synonym: Pap2; PapII
NM_001145846.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus regenerating islet-derived 3 alpha (Reg3a), transcript variant 1, mRNA. (907 bp)
tcaagcagatctggcctgccagaagagaccttcaggacaccttgtgtctattcttagtggaggtgaggcttcctttgtgtcttccctggtgacaggcagagtgaacaacaaccaagacatctggattgggctccatgatccaacaatgggtcaacaacccaatggaggtggatgggagtggagtaactctgacgtactgaattatctcaactgggatggggatccttcctctactgtcaaccgtggtaactgtggcagtctaacagctacctcggagtttctgaagtggggagaccatcactgtgatgtggaattaccttttgtctgcaagttcaagcagtagacccgcagcatcctgagtttatcatgaaggtcaccgtgacaagggatgtacatgacaaggctgtacttgcttcacagtcctgcatcagacttgctgttatgattttccatcttccttcatccgttttcttccccccatttcaggctttttttggtatagttcctgctttgcaatcttgaagataaataatacataaaatcttttattttaaaaaaaaaaaaaaaaa
position 417 441 447 573 591 627 633 657 669 687 699 711 741 759 837 843
Synonym: Pap2; PapII
NM_172077.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

Data Export:

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/rn/D23676_at
lang : en | div : | spe : rn | query_string : D23676_at | format : html | download :

0.000 | 0.000 | search_start;
0.087 | 0.087 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TTTTGTCTGCAAGTTCAAGCAGTAG)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.098 | 0.011 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TTTATCATGAAGGTCACCGTGACAA)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.108 | 0.011 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TGTCAACCGTGGTAACTGTGGCAGT)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.118 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TGGCAGTCTAACAGCTACCTCGGAG)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.129 | 0.011 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TCCTGCATCAGACTTGCTGTTATGA)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.138 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GTTCAAGCAGTAGACCCGCAGCATC)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.148 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GTCTTCCCTGGTGACAGGCAGAGTG)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.158 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GTCACCGTGACAAGGGATGTACATG)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.169 | 0.011 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GGGAGACCATCACTGTGATGTGGAA)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.179 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GCTGTACTTGCTTCACAGTCCTGCA)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.190 | 0.011 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GAACAACAACCAAGACATCTGGATT)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.199 | 0.009 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:CCTGCTTTGCAATCTTGAAGATAAA)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.211 | 0.012 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:CCATCACTGTGATGTGGAATTACCT)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.221 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:CAGCATCCTGAGTTTATCATGAAGG)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.231 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:CAACCAAGACATCTGGATTGGGCTC)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.241 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:ATAGTTCCTGCTTTGCAATCTTGAA)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.278 | 0.037 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TTTTGTCTGCAAGTTCAAGCAGTAG)%26(nt:TTTATCATGAAGGTCACCGTGACAA)%26(nt:TGTCAACCGTGGTAACTGTGGCAGT)%26(nt:TGGCAGTCTAACAGCTACCTCGGAG)%26(nt:TCCTGCATCAGACTTGCTGTTATGA)%26(nt:GTTCAAGCAGTAGACCCGCAGCATC)%26(nt:GTCTTCCCTGGTGACAGGCAGAGTG)%26(nt:GTCACCGTGACAAGGGATGTACATG)%26(nt:GGGAGACCATCACTGTGATGTGGAA)%26(nt:GCTGTACTTGCTTCACAGTCCTGCA)%26(nt:GAACAACAACCAAGACATCTGGATT)%26(nt:CCTGCTTTGCAATCTTGAAGATAAA)%26(nt:CCATCACTGTGATGTGGAATTACCT)%26(nt:CAGCATCCTGAGTTTATCATGAAGG)%26(nt:CAACCAAGACATCTGGATTGGGCTC)%26(nt:ATAGTTCCTGCTTTGCAATCTTGAA)?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.280 | 0.002 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]