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2024-03-29 18:17:44, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Rattus norvegicus splicing factor 1 (Sf1), transcript variant 2, mRNA. (2762 bp)
ctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgtctctcatgtctacaactcag...
position 1165
Synonym: Zfp162
NM_058210.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus splicing factor 1 (Sf1), transcript variant X3, mRNA. (2092 bp)
ctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgagtcgcccaccctggatgaat...
position 936
Synonym: Zfp162
XM_039080398.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus splicing factor 1 (Sf1), transcript variant 1, mRNA. (3400 bp)
ctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgtctctcatgtctacaactcag...
position 1165
Synonym: Zfp162
NM_001110793.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus splicing factor 1 (Sf1), transcript variant X13, mRNA. (2166 bp)
ctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgtctctcatgtctacaactcag...
position 640
Synonym: Zfp162
XM_039080641.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus splicing factor 1 (Sf1), transcript variant X11, mRNA. (2664 bp)
ctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgtctctcatgtctacaactcag...
position 963
Synonym: Zfp162
XM_039080622.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus splicing factor 1 (Sf1), transcript variant X8, mRNA. (2668 bp)
ctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgtctctcatgtctacaactcag...
position 963
Synonym: Zfp162
XM_039080565.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus splicing factor 1 (Sf1), transcript variant X12, mRNA. (2790 bp)
ctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgtctctcatgtctacaactcag...
position 1094
Synonym: Zfp162
XM_039080635.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus splicing factor 1 (Sf1), transcript variant X10, mRNA. (2860 bp)
ctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgtctctcatgtctacaactcag...
position 1170
Synonym: Zfp162
XM_039080601.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus splicing factor 1 (Sf1), transcript variant X9, mRNA. (2875 bp)
ctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgtctctcatgtctacaactcag...
position 1170
Synonym: Zfp162
XM_039080582.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus splicing factor 1 (Sf1), transcript variant X2, mRNA. (3281 bp)
ctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgagtcgcccaccctggatgaat...
position 963
Synonym: Zfp162
XM_039080370.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus splicing factor 1 (Sf1), transcript variant X5, mRNA. (3297 bp)
ctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgtctctcatgtctacaactcag...
position 963
Synonym: Zfp162
XM_039080477.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus splicing factor 1 (Sf1), transcript variant X1, mRNA. (3302 bp)
ctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgtctctcatgtctacaactcag...
position 963
Synonym: Zfp162
XM_039080342.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus splicing factor 1 (Sf1), transcript variant X4, mRNA. (3306 bp)
ctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgtctctcatgtctacaactcag...
position 963
Synonym: Zfp162
XM_039080429.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus splicing factor 1 (Sf1), transcript variant X7, mRNA. (3433 bp)
ctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgtctctcatgtctacaactcag...
position 1094
Synonym: Zfp162
XM_039080547.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus splicing factor 1 (Sf1), transcript variant X6, mRNA. (3504 bp)
ctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgtctctcatgtctacaactcag...
position 1170
Synonym: Zfp162
XM_039080509.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

Data Export:

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/rn/seq%3aAGGATCTTGAGACCCTGGCAGAGCT
lang : en | div : | spe : rn | query_string : seq:AGGATCTTGAGACCCTGGCAGAGCT | format : html | download :

0.000 | 0.000 | search_start;
0.086 | 0.086 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:AGGATCTTGAGACCCTGGCAGAGCT)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.117 | 0.031 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:AGGATCTTGAGACCCTGGCAGAGCT)?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.119 | 0.002 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]