ver.2
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Previous release (v1)
2021-01-16 22:55:39, GGRNA : RefSeq release 203 (Nov, 2020)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
cgagaattccgtacccgaaaaaagcttgaagaggagcggcataccctcattacggagatggttgctctcaacccagactttaaaccacctgcagattacaagcctccagcaacacgtgtgagcgataaagtaatgatcccccaagacgagtatccagaaatcaattttgtggggctcctaattgggcccagagggaacaccctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagagg...
position 763 769 775 781 895 985 991 997 1003 1117 1123 1135 1165 1171 1177 1183
cgagaattccgtacccgaaaaaagcttgaagaggagcggcataccctcattacggagatggttgctctcaacccagactttaaaccacctgcagattacaagcctccagcaacacgtgtgagcgataaagtaatgatcccccaagacgagtatccagaaatcaattttgtggggctcctaattgggcccagagggaacaccctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagagg...
position 768 774 780 786 900 990 996 1002 1008 1122 1128 1140 1170 1176 1182 1188
cgagaattccgtacccgaaaaaagcttgaagaggagcggcataccctcattacggagatggttgctctcaacccagactttaaaccacctgcagattacaagcctccagcaacacgtgtgagcgataaagtaatgatcccccaagacgagtatccagaaatcaattttgtggggctcctaattgggcccagagggaacaccctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagagg...
position 768 774 780 786 900 990 996 1002 1008 1122 1128 1140 1170 1176 1182 1188
cgagaattccgtacccgaaaaaagcttgaagaggagcggcataccctcattacggagatggttgctctcaacccagactttaaaccacctgcagattacaagcctccagcaacacgtgtgagcgataaagtaatgatcccccaagacgagtatccagaaatcaattttgtggggctcctaattgggcccagagggaacaccctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagagg...
position 763 769 775 781 895 985 991 997 1003 1117 1123 1135 1165 1171 1177 1183
cgagaattccgtacccgaaaaaagcttgaagaggagcggcataccctcattacggagatggttgctctcaacccagactttaaaccacctgcagattacaagcctccagcaacacgtgtgagcgataaagtaatgatcccccaagacgagtatccagaaatcaattttgtggggctcctaattgggcccagagggaacaccctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagagg...
position 768 774 780 786 900 990 996 1002 1008 1122 1128 1140 1170 1176 1182 1188
cgagaattccgtacccgaaaaaagcttgaagaggagcggcataccctcattacggagatggttgctctcaacccagactttaaaccacctgcagattacaagcctccagcaacacgtgtgagcgataaagtaatgatcccccaagacgagtatccagaaatcaattttgtggggctcctaattgggcccagagggaacaccctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagagg...
position 692 698 704 710 824 914 920 926 932 1046 1052 1064 1094 1100 1106 1112
cgagaattccgtacccgaaaaaagcttgaagaggagcggcataccctcattacggagatggttgctctcaacccagactttaaaccacctgcagattacaagcctccagcaacacgtgtgagcgataaagtaatgatcccccaagacgagtatccagaaatcaattttgtggggctcctaattgggcccagagggaacaccctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagagg...
position 768 774 780 786 900 990 996 1002 1008 1122 1128 1140 1170 1176 1182 1188
cgagaattccgtacccgaaaaaagcttgaagaggagcggcataccctcattacggagatggttgctctcaacccagactttaaaccacctgcagattacaagcctccagcaacacgtgtgagcgataaagtaatgatcccccaagacgagtatccagaaatcaattttgtggggctcctaattgggcccagagggaacaccctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagagg...
position 768 774 780 786 900 990 996 1002 1008 1122 1128 1140 1170 1176 1182 1188
cgagaattccgtacccgaaaaaagcttgaagaggagcggcataccctcattacggagatggttgctctcaacccagactttaaaccacctgcagattacaagcctccagcaacacgtgtgagcgataaagtaatgatcccccaagacgagtatccagaaatcaattttgtggggctcctaattgggcccagagggaacaccctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagagg...
position 768 774 780 786 900 990 996 1002 1008 1122 1128 1140 1170 1176 1182 1188
cgagaattccgtacccgaaaaaagcttgaagaggagcggcataccctcattacggagatggttgctctcaacccagactttaaaccacctgcagattacaagcctccagcaacacgtgtgagcgataaagtaatgatcccccaagacgagtatccagaaatcaattttgtggggctcctaattgggcccagagggaacaccctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagagg...
position 768 774 780 786 900 990 996 1002 1008 1122 1128 1140 1170 1176 1182 1188
Data Export:
Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.
Debug Info:
Redirect URI : http://ggrna.dbcls.jp/rn/AF079873_at
lang : en |
div : |
spe : rn |
query_string : AF079873_at |
format : html |
download :
0.000 | 0.000 | search_start;
0.086 | 0.086 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TTGAGACCCTGGCAGAGCTCAGAGA)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.099 | 0.013 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TTGAATGGCACTCTACGGGAAGATG)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.111 | 0.012 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GATTACAAGCCTCCAGCAACACGTG)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.122 | 0.011 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GATGAACCTCTTCATGCTCTAGTCA)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.133 | 0.011 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GAGTTAGCTCGCTTGAATGGCACTC)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.144 | 0.011 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GAATGCAACGCCAAGATCATGATAC)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.154 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:CTTCGAGAGTTAGCTCGCTTGAATG)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.164 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:CTAGTCACTGCCAATACAATGGAGA)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.176 | 0.011 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:CCTGCAGATTACAAGCCTCCAGCAA)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.185 | 0.009 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:CCTCTTCATGCTCTAGTCACTGCCA)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.540 | 0.355 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:CCCTGGCAGAGCTCAGAGACACGAA)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.549 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:CCAGCAACACGTGTGAGCGATAAAG)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.558 | 0.008 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:CATGCTCTAGTCACTGCCAATACAA)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.567 | 0.009 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:CAGAGCTCAGAGACACGAAGCATTA)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.578 | 0.011 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:AGGATCTTGAGACCCTGGCAGAGCT)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.587 | 0.009 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:AAGCCTCCAGCAACACGTGTGAGCG)?source=Rattus norvegicus (Norway rat)?to=0&format=json
1.137 | 0.549 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TTGAGACCCTGGCAGAGCTCAGAGA)%26(nt:TTGAATGGCACTCTACGGGAAGATG)%26(nt:GATTACAAGCCTCCAGCAACACGTG)%26(nt:GATGAACCTCTTCATGCTCTAGTCA)%26(nt:GAGTTAGCTCGCTTGAATGGCACTC)%26(nt:GAATGCAACGCCAAGATCATGATAC)%26(nt:CTTCGAGAGTTAGCTCGCTTGAATG)%26(nt:CTAGTCACTGCCAATACAATGGAGA)%26(nt:CCTGCAGATTACAAGCCTCCAGCAA)%26(nt:CCTCTTCATGCTCTAGTCACTGCCA)%26(nt:CCCTGGCAGAGCTCAGAGACACGAA)%26(nt:CCAGCAACACGTGTGAGCGATAAAG)%26(nt:CATGCTCTAGTCACTGCCAATACAA)%26(nt:CAGAGCTCAGAGACACGAAGCATTA)%26(nt:AGGATCTTGAGACCCTGGCAGAGCT)%26(nt:AAGCCTCCAGCAACACGTGTGAGCG)?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
1.146 | 0.009 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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