ver.2
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Previous release (v1)
2024-04-20 16:41:28, GGRNA : RefSeq release 222 (Jan, 2024)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
ttccttttctacgttggaacgtgccccggaatgtggccgtcggcacacttctcaggacaatgaatccttcctgtttttctttttatgccacacagtgcattgtttttctatctgcttgtcttatttttagaataatttagaaaaacaacaaaggctgtttttcctaattttggcatgaaccccttgttccaaatgaagacggcatcgcgagtggctctgaggtgtgtctgcagtgcccagtgtgctcaggaccatcggggtctgtcctggggaaggcaggggttggcagacccttgcctacgtggtgccgtcctgctgatgtggtaggctagcaatattttggttaaaatcatgtttgtgactgtaaccatttgtatgaattatt
position 2324
Synonym: 50-kDaBFA-inducedADP-ribosylatedsubstrate; Bars; BARS-50; CtBP3/BARS
NM_019201.3 -
Rattus norvegicus (Norway rat) -
NCBI -
UCSC -
RefEx(expression)
ttccttttctacgttggaacgtgccccggaatgtggccgtcggcacacttctcaggacaatgaatccttcctgtttttctttttatgccacacagtgcattgtttttctatctgcttgtcttatttttagaataatttagaaaaacaacaaaggctgtttttcctaattttggcatgaaccccttgttccaaatgaagacggcatcgcgagtggctctgaggtgtgtctgcagtgcccagtgtgctcaggaccatcggggtctgtcctggggaaggcaggggttggcagacccttgcctacgtggtgccgtcctgctgatgtggtaggctagcaatattttggttaaaatcatgtttgtgactgtaaccatttgtatgaattattttaaagaaataaaaatcccagaaagagccggca
position 1930
Synonym: 50-kDaBFA-inducedADP-ribosylatedsubstrate; Bars; BARS-50; CtBP3/BARS
XM_039091786.1 -
Rattus norvegicus (Norway rat) -
NCBI -
UCSC -
RefEx(expression)
ttccttttctacgttggaacgtgccccggaatgtggccgtcggcacacttctcaggacaatgaatccttcctgtttttctttttatgccacacagtgcattgtttttctatctgcttgtcttatttttagaataatttagaaaaacaacaaaggctgtttttcctaattttggcatgaaccccttgttccaaatgaagacggcatcgcgagtggctctgaggtgtgtctgcagtgcccagtgtgctcaggaccatcggggtctgtcctggggaaggcaggggttggcagacccttgcctacgtggtgccgtcctgctgatgtggtaggctagcaatattttggttaaaatcatgtttgtgactgtaaccatttgtatgaattattttaaagaaataaaaatcccagaaagagccggca
position 2053
Synonym: 50-kDaBFA-inducedADP-ribosylatedsubstrate; Bars; BARS-50; CtBP3/BARS
XM_006251228.4 -
Rattus norvegicus (Norway rat) -
NCBI -
UCSC -
RefEx(expression)
ttccttttctacgttggaacgtgccccggaatgtggccgtcggcacacttctcaggacaatgaatccttcctgtttttctttttatgccacacagtgcattgtttttctatctgcttgtcttatttttagaataatttagaaaaacaacaaaggctgtttttcctaattttggcatgaaccccttgttccaaatgaagacggcatcgcgagtggctctgaggtgtgtctgcagtgcccagtgtgctcaggaccatcggggtctgtcctggggaaggcaggggttggcagacccttgcctacgtggtgccgtcctgctgatgtggtaggctagcaatattttggttaaaatcatgtttgtgactgtaaccatttgtatgaattattttaaagaaataaaaatcccagaaagagccggca
position 2055
Synonym: 50-kDaBFA-inducedADP-ribosylatedsubstrate; Bars; BARS-50; CtBP3/BARS
XM_006251227.4 -
Rattus norvegicus (Norway rat) -
NCBI -
UCSC -
RefEx(expression)
ttccttttctacgttggaacgtgccccggaatgtggccgtcggcacacttctcaggacaatgaatccttcctgtttttctttttatgccacacagtgcattgtttttctatctgcttgtcttatttttagaataatttagaaaaacaacaaaggctgtttttcctaattttggcatgaaccccttgttccaaatgaagacggcatcgcgagtggctctgaggtgtgtctgcagtgcccagtgtgctcaggaccatcggggtctgtcctggggaaggcaggggttggcagacccttgcctacgtggtgccgtcctgctgatgtggtaggctagcaatattttggttaaaatcatgtttgtgactgtaaccatttgtatgaattattttaaagaaataaaaatcccagaaagagccggca
position 2133
Synonym: 50-kDaBFA-inducedADP-ribosylatedsubstrate; Bars; BARS-50; CtBP3/BARS
XM_006251226.4 -
Rattus norvegicus (Norway rat) -
NCBI -
UCSC -
RefEx(expression)
ttccttttctacgttggaacgtgccccggaatgtggccgtcggcacacttctcaggacaatgaatccttcctgtttttctttttatgccacacagtgcattgtttttctatctgcttgtcttatttttagaataatttagaaaaacaacaaaggctgtttttcctaattttggcatgaaccccttgttccaaatgaagacggcatcgcgagtggctctgaggtgtgtctgcagtgcccagtgtgctcaggaccatcggggtctgtcctggggaaggcaggggttggcagacccttgcctacgtggtgccgtcctgctgatgtggtaggctagcaatattttggttaaaatcatgtttgtgactgtaaccatttgtatgaattattttaaagaaataaaaatcccagaaagagccggca
position 2135
Synonym: 50-kDaBFA-inducedADP-ribosylatedsubstrate; Bars; BARS-50; CtBP3/BARS
XM_006251225.4 -
Rattus norvegicus (Norway rat) -
NCBI -
UCSC -
RefEx(expression)
ttccttttctacgttggaacgtgccccggaatgtggccgtcggcacacttctcaggacaatgaatccttcctgtttttctttttatgccacacagtgcattgtttttctatctgcttgtcttatttttagaataatttagaaaaacaacaaaggctgtttttcctaattttggcatgaaccccttgttccaaatgaagacggcatcgcgagtggctctgaggtgtgtctgcagtgcccagtgtgctcaggaccatcggggtctgtcctggggaaggcaggggttggcagacccttgcctacgtggtgccgtcctgctgatgtggtaggctagcaatattttggttaaaatcatgtttgtgactgtaaccatttgtatgaattattttaaagaaataaaaatcccagaaagagccggca
position 2156
Synonym: 50-kDaBFA-inducedADP-ribosylatedsubstrate; Bars; BARS-50; CtBP3/BARS
XM_017599147.2 -
Rattus norvegicus (Norway rat) -
NCBI -
UCSC -
RefEx(expression)
ttccttttctacgttggaacgtgccccggaatgtggccgtcggcacacttctcaggacaatgaatccttcctgtttttctttttatgccacacagtgcattgtttttctatctgcttgtcttatttttagaataatttagaaaaacaacaaaggctgtttttcctaattttggcatgaaccccttgttccaaatgaagacggcatcgcgagtggctctgaggtgtgtctgcagtgcccagtgtgctcaggaccatcggggtctgtcctggggaaggcaggggttggcagacccttgcctacgtggtgccgtcctgctgatgtggtaggctagcaatattttggttaaaatcatgtttgtgactgtaaccatttgtatgaattattttaaagaaataaaaatcccagaaagagccggca
position 2247
Synonym: 50-kDaBFA-inducedADP-ribosylatedsubstrate; Bars; BARS-50; CtBP3/BARS
XM_006251229.3 -
Rattus norvegicus (Norway rat) -
NCBI -
UCSC -
RefEx(expression)
Data Export:
Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.
Debug Info:
Redirect URI : http://ggrna.dbcls.jp/rn/seq%3aGACCCTTGCCTACGTGGTGCCGTCC
lang : en |
div : |
spe : rn |
query_string : seq:GACCCTTGCCTACGTGGTGCCGTCC |
format : html |
download :
0.000 | 0.000 | search_start;
0.087 | 0.086 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:GACCCTTGCCTACGTGGTGCCGTCC)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.106 | 0.020 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:GACCCTTGCCTACGTGGTGCCGTCC)?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.107 | 0.001 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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