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2022-09-25 17:41:09, GGRNA : RefSeq release 212 (May, 2022)

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Clostridium kluyveri strain NBRC 12016 23S ribosomal RNA gene, complete sequence. (2896 bp)
Clostridium kluyveri" /mol_type="rRNA" /strain="NBRC 12016" /culture_collection="NBRC:12016" /type_material="type strain of Clostridium kluyveri" /db_xref="taxon:1534" rRNA 1..2896 /product="23S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Inui,M., Nonaka,H., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Vertes,A.A. and Yukawa,H. TITLE Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species JOURNAL Unpublished REFERENCE 2 (bases 1 to 2896) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (14-FEB-2013) National Center for...
NR_076268.1 - Clostridium kluyveri - NCBI
Clostridium kluyveri NBRC 12016 16S ribosomal RNA, partial sequence. (1506 bp)
genes (from 1.93 Mbp to 1.99 Mbp). A similar region occurs in DSM 555 (1.93 Mbp to 2.06 Mbp) but it is not only double the size of the NBRC12016 region, but also a duplicate." rRNA 1506 /product="16S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Inui,M., Nonaka,H., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Vertes,A.A. and Yukawa,H. TITLE Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species JOURNAL Unpublished REFERENCE 2 (bases 1 to 1506) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (28-JAN-2013) National Center...
NR_074447.1 - Clostridium kluyveri NBRC 12016 - NCBI
Clostridium kluyveri NBRC 12016 strain NBRC 12016 5S ribosomal RNA, complete sequence. (114 bp)
mol_type="rRNA" /strain="NBRC 12016" /type_material="type strain of Clostridium kluyveri" /db_xref="taxon:583346" /note="type strain of Clostridium kluyveri NBRC 12016" rRNA 1..114 /product="5S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Inui,M., Nonaka,H., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Vertes,A.A. and Yukawa,H. TITLE Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species JOURNAL Unpublished REFERENCE 2 (bases 1 to 114) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (14-FEB-2013) National Center for...
NR_075229.1 - Clostridium kluyveri NBRC 12016 - NCBI
Sus scrofa cyclin dependent kinase 1 (CDK1), mRNA. (1265 bp)
STS 702..885 /gene="CDK1" /gene_synonym="CDC2" /standard_name="ksks369" /db_xref="UniSTS:514418" STS 766..907 /gene="CDK1" /gene_synonym="CDC2" /standard_name="RH71273" /db_xref="UniSTS:82900" ORIGIN // REFERENCE 1 (bases 1 to 1265) AUTHORS Fujii W, Nishimura T, Kano K, Sugiura K and Naito K. TITLE CDK7 and CCNH are components of CDK-activating kinase and are required for meiotic progression of pig oocytes JOURNAL Biol. Reprod. 85 (6), 1124-1132 (2011) PUBMED 21778139 REMARK GeneRIF: CDK7 and CCNH activate CDC2 by T161 phosphorylation and make up CDK-activating kinase, which is required for...
Synonym: CDC2
NM_001159304.2 - Sus scrofa (pig) - NCBI
Porphyromonas gingivalis ATCC 33277 16S ribosomal RNA, partial sequence. (1475 bp)
Qualifiers source 1..1475 /organism="Porphyromonas gingivalis ATCC 33277" /mol_type="rRNA" /strain="ATCC 33277" /culture_collection="ATCC:33277" /type_material="type strain of Porphyromonas gingivalis" /db_xref="taxon:431947" rRNA 1475 /product="16S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Naito,M., Hirakawa,H., Yamashita,A., Ohara,N., Shoji,M., Yukitake,H., Nakayama,K., Toh,H., Yoshimura,F., Kuhara,S., Hattori,M., Hayashi,T. and Nakayama,K. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive...
NR_074234.1 - Porphyromonas gingivalis ATCC 33277 - NCBI
Rattus norvegicus MOS proto-oncogene, serine/threonine kinase (Mos), mRNA. (1308 bp)
REMARK GeneRIF: NGF, by enhancing Mos in late spermatocytes, is one of the intra-testicular factors which adjusts the number of round spermatids that can be supported by Sertoli cells Publication Status: Online-Only REFERENCE 3 (bases 1 to 1308) AUTHORS Nishimura T, Shimaoka T, Kano K and Naito K. TITLE Insufficient amount of Cdc2 and continuous activation of Wee1 B are the cause of meiotic failure in porcine growing oocytes JOURNAL J. Reprod. Dev. 55 (5), 553-557 (2009) PUBMED 19550110 REFERENCE 4 (bases 1 to 1308) AUTHORS Ohashi S, Naito K, Sugiura K, Iwamori N, Goto S, Naruoka H and Tojo H...
NM_020102.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Porphyromonas gingivalis strain ATCC 33277 23S ribosomal RNA gene, complete sequence. (2883 bp)
Location/Qualifiers source 1..2883 /organism="Porphyromonas gingivalis" /mol_type="rRNA" /strain="ATCC 33277" /culture_collection="ATCC:33277" /type_material="type strain of Porphyromonas gingivalis" /db_xref="taxon:837" rRNA 1..2883 /product="23S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Naito,M., Hirakawa,H., Yamashita,A., Ohara,N., Shoji,M., Yukitake,H., Nakayama,K., Toh,H., Yoshimura,F., Kuhara,S., Hattori,M., Hayashi,T. and Nakayama,K. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive...
NR_076276.1 - Porphyromonas gingivalis - NCBI
Porphyromonas gingivalis ATCC 33277 strain ATCC 33277 5S ribosomal RNA, complete sequence. (108 bp)
organism="Porphyromonas gingivalis ATCC 33277" /mol_type="rRNA" /strain="ATCC 33277" /type_material="type strain of Porphyromonas gingivalis" /db_xref="taxon:431947" /note="type strain of Porphyromonas gingivalis ATCC 33277" rRNA 1..108 /product="5S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Naito,M., Hirakawa,H., Yamashita,A., Ohara,N., Shoji,M., Yukitake,H., Nakayama,K., Toh,H., Yoshimura,F., Kuhara,S., Hattori,M., Hayashi,T. and Nakayama,K. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive...
NR_075237.1 - Porphyromonas gingivalis ATCC 33277 - NCBI
Sus scrofa MOS proto-oncogene, serine/threonine kinase (MOS), mRNA. (1675 bp)
MOS" /gene_synonym="c-mos; p39-mos" /note="activation loop (A-loop); other site" /db_xref="CDD:270881" STS 1226..1382 /gene="MOS" /gene_synonym="c-mos; p39-mos" /standard_name="CMOSMS" /db_xref="UniSTS:252616" ORIGIN // REFERENCE 1 (bases 1 to 1675) AUTHORS Nishimura T, Shimaoka T, Kano K and Naito K. TITLE Insufficient amount of Cdc2 and continuous activation of Wee1 B are the cause of meiotic failure in porcine growing oocytes JOURNAL J Reprod Dev 55 (5), 553-557 (2009) PUBMED 19550110 REFERENCE 2 (bases 1 to 1675) AUTHORS Dai Y, Newman B and Moor R. TITLE Translational regulation of MOS...
Synonym: c-mos; p39-mos
NM_001113219.1 - Sus scrofa (pig) - NCBI
Sus scrofa WEE2 oocyte meiosis inhibiting kinase (WEE2), mRNA. (2045 bp)
inference="alignment:Splign:2.1.0" exon 1592..1853 /gene="WEE2" /gene_synonym="WEE1B" /inference="alignment:Splign:2.1.0" exon 1854..2022 /gene="WEE2" /gene_synonym="WEE1B" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2045) AUTHORS Shimaoka T, Nishimura T, Kano K and Naito K. TITLE Analyses of the regulatory mechanism of porcine WEE1B: the phosphorylation sites of porcine WEE1B and mouse WEE1B are different JOURNAL J Reprod Dev 57 (2), 223-228 (2011) PUBMED 21123961 REMARK GeneRIF: results suggest pWEE1B is activated after phosphorylation of the Ser77 residue, which is...
Synonym: WEE1B
NM_001097507.2 - Sus scrofa (pig) - NCBI
Sus scrofa protein kinase cAMP-dependent type II regulatory subunit alpha (PRKAR2A), mRNA. (1236 bp)
exon 866..931 /gene="PRKAR2A" /inference="alignment:Splign:2.1.0" exon 932..1073 /gene="PRKAR2A" /inference="alignment:Splign:2.1.0" exon 1074..1236 /gene="PRKAR2A" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1236) AUTHORS Nishimura T, Fujii W, Sugiura K and Naito K. TITLE Cytoplasmic anchoring of cAMP-dependent protein kinase (PKA) by A-kinase anchor proteins (AKAPs) is required for meiotic arrest of porcine full-grown and growing oocytes JOURNAL Biol Reprod 90 (3), 58 (2014) PUBMED 24501172 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1236) AUTHORS...
NM_214258.2 - Sus scrofa (pig) - NCBI
Takifugu rubripes taste receptor, type 2, member 1 (tas2r1), mRNA. (921 bp)
of the SMBE Tri-National Young Investigators' Workshop 2005. Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates JOURNAL Mol. Biol. Evol. 23 (5), 964-972 (2006) PUBMED 16484289 REFERENCE 2 (bases 1 to 921) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966...
NM_001078602.1 - Takifugu rubripes (Fugu rubripes) - NCBI
Rattus norvegicus double C2 domain alpha (Doc2a), mRNA. (1447 bp)
JP. TITLE Different spatiotemporal expression of DOC2 genes in the developing rat brain argues for an additional, nonsynaptic role of DOC2B in early development JOURNAL Eur J Neurosci 12 (1), 165-171 (2000) PUBMED 10651871 REFERENCE 4 (bases 1 to 1447) AUTHORS Nagano F, Orita S, Sasaki T, Naito A, Sakaguchi G, Maeda M, Watanabe T, Kominami E, Uchiyama Y and Takai Y. TITLE Interaction of Doc2 with tctex-1, a light chain of cytoplasmic dynein. Implication in dynein-dependent vesicle transport JOURNAL J Biol Chem 273 (46), 30065-30068 (1998) PUBMED 9804756 REFERENCE 5 (bases 1 to 1447) AUTHORS...
NM_022937.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Mus musculus metastasis associated gene 2 (Mtag2), transcript variant 1, long non-coding RNA. (716 bp)
db_xref="GeneID:50994" /db_xref="MGI:MGI:1860766" exon 1..716 /gene="Mtag2" /gene_synonym="MAG" /inference="alignment:Splign:2.1.0" regulatory 695..700 /regulatory_class="polyA_signal_sequence" /gene="Mtag2" /gene_synonym="MAG" ORIGIN // REFERENCE 1 (bases 1 to 716) AUTHORS Ishiguro T, Nagawa H, Naito M and Tsuruo T. TITLE Analysis of novel metastasis-associated gene TI-227 JOURNAL Jpn J Cancer Res 91 (4), 390-394 (2000) PUBMED 10804286 REFERENCE 2 (bases 1 to 716) AUTHORS Kelly CD, Carter ND, Jeffery S and Edwards YH. TITLE Characterisation of cDNA clones for rat muscle carbonic anhydrase III...
Synonym: MAG
NR_027802.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Caldibacillus hisashii strain N-11 16S ribosomal RNA, partial sequence. (1506 bp)
REFERENCE 2 (bases 1 to 1506) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (28-NOV-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1506) AUTHORS Miyamoto,H., Seta,M., Horiuchi,S., Iwasawa,Y., Naito,T., Miyamoto,H., Itoh,K. and Kodama,H. TITLE Direct Submission JOURNAL Submitted (03-MAR-2011) Contact:Hiroaki Kodama Chiba University, Graduate School of Horticulture; 648, Matsudo, Chiba 271-8510, Japan...
NR_144578.1 - Caldibacillus hisashii - NCBI
Mus musculus metastasis associated gene 2 (Mtag2), transcript variant 2, long non-coding RNA. (687 bp)
variant 2" /db_xref="GeneID:50994" /db_xref="MGI:MGI:1860766" exon 1..114 /gene="Mtag2" /gene_synonym="MAG" /inference="alignment:Splign:2.1.0" exon 115..687 /gene="Mtag2" /gene_synonym="MAG" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 687) AUTHORS Ishiguro T, Nagawa H, Naito M and Tsuruo T. TITLE Analysis of novel metastasis-associated gene TI-227 JOURNAL Jpn J Cancer Res 91 (4), 390-394 (2000) PUBMED 10804286 REFERENCE 2 (bases 1 to 687) AUTHORS Kelly CD, Carter ND, Jeffery S and Edwards YH. TITLE Characterisation of cDNA clones for rat muscle carbonic anhydrase III...
Synonym: MAG
NR_015480.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Solanum lycopersicum Tm-1 protein (Tm-1), mRNA. (2763 bp)
alignment:Splign:2.1.0" exon 2057..2310 /gene="Tm-1" /gene_synonym="Tm-1^GCR237; tm-1^GCR26" /inference="alignment:Splign:2.1.0" exon 2311..2763 /gene="Tm-1" /gene_synonym="Tm-1^GCR237; tm-1^GCR26" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2763) AUTHORS Ishibashi K, Naito S, Meshi T and Ishikawa M. TITLE An inhibitory interaction between viral and cellular proteins underlies the resistance of tomato to nonadapted tobamoviruses JOURNAL Proc Natl Acad Sci U S A 106 (21), 8778-8783 (2009) PUBMED 19423673 REMARK GeneRIF: Results suggest that an inhibitory interaction...
Synonym: Tm-1^GCR237; tm-1^GCR26
NM_001247795.2 - Solanum lycopersicum (Lycopersicon esculentum) - NCBI
Mus musculus caveolae associated 4 (Cavin4), mRNA. (2062 bp)
J Am Heart Assoc 8 (15), e012047 (2019) PUBMED 31364493 REMARK GeneRIF: Systems Network Genomic Analysis Reveals Cardioprotective Effect of MURC/Cavin-4 Deletion Against Ischemia/Reperfusion Injury. REFERENCE 3 (bases 1 to 2062) AUTHORS Miyagawa K, Ogata T, Ueyama T, Kasahara T, Nakanishi N, Naito D, Taniguchi T, Hamaoka T, Maruyama N, Nishi M, Kimura T, Yamada H, Aoki H and Matoba S. TITLE Loss of MURC/Cavin-4 induces JNK and MMP-9 activity enhancement in vascular smooth muscle cells and exacerbates abdominal aortic aneurysm JOURNAL Biochem Biophys Res Commun 487 (3), 587-593 (2017) PUBMED...
Synonym: 2310039E09Rik; Murc
NM_026509.3 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Sus scrofa aurora kinase A (AURKA), mRNA. (1218 bp)
PUBMED 24983972 REMARK GeneRIF: Aurora kinase A is unlikely to be involved in CPEB1 activating phosphorylation and cyclin B1 mRNA polyadenylation during meiotic maturation of porcine oocytes. Publication Status: Online-Only REFERENCE 2 (bases 1 to 1218) AUTHORS Nishimura Y, Kano K and Naito K. TITLE Porcine CPEB1 is involved in Cyclin B translation and meiotic resumption in porcine oocytes JOURNAL Anim Sci J 81 (4), 444-452 (2010) PUBMED 20662813 REFERENCE 3 (bases 1 to 1218) AUTHORS Nishimura Y, Endo T, Kano K and Naito K. TITLE Porcine Aurora A accelerates Cyclin B and Mos synthesis and...
Synonym: ARK-1; STK6
NM_001025225.1 - Sus scrofa (pig) - NCBI
Rattus norvegicus caveolae associated protein 4 (Cavin4), mRNA. (1089 bp)
novel evidence that MURC regulates SOCE by interacting with STIM1 in cardiomyocytes. In addition, we identified a first potential mechanism by which the R140W mutation of MURC may contribute to calcium mishandling and the development of cardiomyopathies. REFERENCE 2 (bases 1 to 1089) AUTHORS Naito D, Ogata T, Hamaoka T, Nakanishi N, Miyagawa K, Maruyama N, Kasahara T, Taniguchi T, Nishi M, Matoba S and Ueyama T. TITLE The coiled-coil domain of MURC/cavin-4 is involved in membrane trafficking of caveolin-3 in cardiomyocytes JOURNAL Am J Physiol Heart Circ Physiol 309 (12), H2127-H2136 (2015)...
Synonym: RGD1310395
NM_001107931.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Homo sapiens ret finger protein like 4A (RFPL4A), mRNA. (1198 bp)
Lotem E, Zhong Q, Aloy P, Bader GD, De Las Rivas J, Gaudet S, Hao T, Rak J, Tavernier J, Hill DE, Vidal M, Roth FP and Calderwood MA. TITLE A reference map of the human binary protein interactome JOURNAL Nature 580 (7803), 402-408 (2020) PUBMED 32296183 REFERENCE 2 (bases 1 to 1198) AUTHORS Naito A, Yamamoto H, Kagawa Y, Naito Y, Okuzaki D, Otani K, Iwamoto Y, Maeda S, Kikuta J, Nishikawa K, Uemura M, Nishimura J, Hata T, Takemasa I, Mizushima T, Ishii H, Doki Y, Mori M and Ishii M. TITLE RFPL4A increases the G1 population and decreases sensitivity to chemotherapy in human colorectal cancer...
Synonym: RFPL4; RNF210
NM_001145014.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus pregnancy up-regulated nonubiquitous CaM kinase (Pnck), mRNA. (1619 bp)
in generation of autonomous activity. REFERENCE 2 (bases 1 to 1619) AUTHORS Hook SS and Means AR. TITLE Ca(2+)/CaM-dependent kinases: from activation to function JOURNAL Annu Rev Pharmacol Toxicol 41, 471-505 (2001) PUBMED 11264466 REMARK Review article REFERENCE 3 (bases 1 to 1619) AUTHORS Naito Y, Watanabe Y, Yokokura H, Sugita R, Nishio M and Hidaka H. TITLE Isoform-specific activation and structural diversity of calmodulin kinase I JOURNAL J Biol Chem 272 (51), 32704-32708 (1997) PUBMED 9405489 REFERENCE 4 (bases 1 to 1619) AUTHORS Yokokura H, Terada O, Naito Y and Hidaka H. TITLE...
Synonym: Camk1b
NM_017275.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Danio rerio si:dkeyp-75h12.5 (si:dkeyp-75h12.5), mRNA. (1098 bp)
E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and Hertzano R. TITLE RFX transcription factors are essential for hearing in mice JOURNAL Nat Commun 6, 8549 (2015) PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1098) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem. Biophys. Res. Commun. 445 (2), 357-362 (2014) PUBMED 24513284...
Synonym: fj40g07; wu:fj40g07
NM_001386636.1 - Danio rerio (zebrafish) - NCBI - UCSC
Sus scrofa cyclin H (CCNH), mRNA. (972 bp)
Splign:2.1.0" exon 761..872 /gene="CCNH" /inference="alignment:Splign:2.1.0" exon 873..933 /gene="CCNH" /inference="alignment:Splign:2.1.0" exon 934..972 /gene="CCNH" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 972) AUTHORS Fujii W, Nishimura T, Kano K, Sugiura K and Naito K. TITLE CDK7 and CCNH are components of CDK-activating kinase and are required for meiotic progression of pig oocytes JOURNAL Biol. Reprod. 85 (6), 1124-1132 (2011) PUBMED 21778139 REMARK GeneRIF: CDK7 and CCNH activate CDC2 by T161 phosphorylation and make up CDK-activating kinase, which is...
NM_001166313.1 - Sus scrofa (pig) - NCBI
Mus musculus double C2, alpha (Doc2a), transcript variant 1, mRNA. (2557 bp)
Oorschot VM, Klumperman J and Verhage M. TITLE Quantification of synapse formation and maintenance in vivo in the absence of synaptic release JOURNAL Neuroscience 126 (1), 115-126 (2004) PUBMED 15145078 REFERENCE 9 (bases 1 to 2557) AUTHORS Sakaguchi G, Manabe T, Kobayashi K, Orita S, Sasaki T, Naito A, Maeda M, Igarashi H, Katsuura G, Nishioka H, Mizoguchi A, Itohara S, Takahashi T and Takai Y. TITLE Doc2alpha is an activity-dependent modulator of excitatory synaptic transmission JOURNAL Eur J Neurosci 11 (12), 4262-4268 (1999) PUBMED 10594652 REFERENCE 10 (bases 1 to 2557) AUTHORS Naito A,...
NM_010069.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Gallus gallus ALX homeobox 4 (ALX4), transcript variant 3, mRNA. (5239 bp)
exon 530..658 /gene="ALX4" /inference="alignment:Splign:2.1.0" exon 659..5239 /gene="ALX4" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 5239) AUTHORS Takahashi M, Tamura K, Buscher D, Masuya H, Yonei-Tamura S, Matsumoto K, Naitoh-Matsuo M, Takeuchi J, Ogura K, Shiroishi T, Ogura T and Izpisua Belmonte JC. TITLE The role of Alx-4 in the establishment of anteroposterior polarity during vertebrate limb development JOURNAL Development 125 (22), 4417-4425 (1998) PUBMED 9778501 REMARK Erratum:[Development 1998 Dec;125(23):preceding 4595]...
NM_001397959.1 - Gallus gallus (chicken) - NCBI - UCSC
Gallus gallus ALX homeobox 4 (ALX4), transcript variant 2, mRNA. (5253 bp)
exon 544..672 /gene="ALX4" /inference="alignment:Splign:2.1.0" exon 673..5253 /gene="ALX4" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 5253) AUTHORS Takahashi M, Tamura K, Buscher D, Masuya H, Yonei-Tamura S, Matsumoto K, Naitoh-Matsuo M, Takeuchi J, Ogura K, Shiroishi T, Ogura T and Izpisua Belmonte JC. TITLE The role of Alx-4 in the establishment of anteroposterior polarity during vertebrate limb development JOURNAL Development 125 (22), 4417-4425 (1998) PUBMED 9778501 REMARK Erratum:[Development 1998 Dec;125(23):preceding 4595]...
NM_001397958.1 - Gallus gallus (chicken) - NCBI - UCSC
Gallus gallus DEAD-box helicase 4 (DDX4), mRNA. (2948 bp)
stem cells to a germ cell fate JOURNAL Dev Biol 330 (1), 73-82 (2009) PUBMED 19324033 REMARK GeneRIF: Thus, our results demonstrate that Vasa can drive ES cell differentiation towards the germ cell lineage, both in vitro and in vivo REFERENCE 5 (bases 1 to 2948) AUTHORS Minematsu T, Harumi T and Naito M. TITLE Germ cell-specific expression of GFP gene induced by chicken vasa homologue (Cvh) promoter in early chicken embryos JOURNAL Mol Reprod Dev 75 (10), 1515-1522 (2008) PUBMED 18324671 REMARK GeneRIF: Cvh promoter provide the basis for for visualization, purification and genetical...
NM_204708.3 - Gallus gallus (chicken) - NCBI - UCSC
Takifugu rubripes taste receptor, type 1, member 2b (tas1r2b), mRNA. (2451 bp)
alignment:Splign:2.1.0" exon 1198..1401 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 1402..1522 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 1523..2451 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2451) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966...
NM_001105218.1 - Takifugu rubripes (Fugu rubripes) - NCBI
Mus musculus double C2, alpha (Doc2a), transcript variant 2, mRNA. (1946 bp)
Oorschot VM, Klumperman J and Verhage M. TITLE Quantification of synapse formation and maintenance in vivo in the absence of synaptic release JOURNAL Neuroscience 126 (1), 115-126 (2004) PUBMED 15145078 REFERENCE 9 (bases 1 to 1946) AUTHORS Sakaguchi G, Manabe T, Kobayashi K, Orita S, Sasaki T, Naito A, Maeda M, Igarashi H, Katsuura G, Nishioka H, Mizoguchi A, Itohara S, Takahashi T and Takai Y. TITLE Doc2alpha is an activity-dependent modulator of excitatory synaptic transmission JOURNAL Eur J Neurosci 11 (12), 4262-4268 (1999) PUBMED 10594652 REFERENCE 10 (bases 1 to 1946) AUTHORS Naito A,...
NM_001368355.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Danio rerio taste receptor, type 2, member 201, tandem duplicate 1 (tas2r201.1), mRNA. (942 bp)
Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates JOURNAL Mol Biol Evol 23 (5), 964-972 (2006) PUBMED 16484289 REFERENCE 4 (bases 1 to 942) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech Dev 122 (12), 1310-1321 (2005) PUBMED 16274966...
Synonym: tas2r2a
NM_001083864.1 - Danio rerio (zebrafish) - NCBI - UCSC
Mus musculus double C2, alpha (Doc2a), transcript variant 4, mRNA. (2104 bp)
Oorschot VM, Klumperman J and Verhage M. TITLE Quantification of synapse formation and maintenance in vivo in the absence of synaptic release JOURNAL Neuroscience 126 (1), 115-126 (2004) PUBMED 15145078 REFERENCE 9 (bases 1 to 2104) AUTHORS Sakaguchi G, Manabe T, Kobayashi K, Orita S, Sasaki T, Naito A, Maeda M, Igarashi H, Katsuura G, Nishioka H, Mizoguchi A, Itohara S, Takahashi T and Takai Y. TITLE Doc2alpha is an activity-dependent modulator of excitatory synaptic transmission JOURNAL Eur J Neurosci 11 (12), 4262-4268 (1999) PUBMED 10594652 REFERENCE 10 (bases 1 to 2104) AUTHORS Naito A,...
NM_001368357.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Sus scrofa speedy/RINGO cell cycle regulator family member A (SPDYA), mRNA. (936 bp)
alignment:Splign:2.1.0" exon 553..847 /gene="SPDYA" /gene_synonym="RINGO; SPDY1" /inference="alignment:Splign:2.1.0" exon 848..936 /gene="SPDYA" /gene_synonym="RINGO; SPDY1" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 936) AUTHORS Kume S, Endo T, Nishimura Y, Kano K and Naito K. TITLE Porcine SPDYA2 (RINGO A2) stimulates CDC2 activity and accelerates meiotic maturation of porcine oocytes JOURNAL Biol. Reprod. 76 (3), 440-447 (2007) PUBMED 17151349 REMARK GeneRIF: pig SPDYA2 has important role in meiotic maturation of porcine oocytes and the rapid degradation of SPDY...
Synonym: RINGO; SPDY1
NM_001025223.1 - Sus scrofa (pig) - NCBI
Mus musculus double C2, alpha (Doc2a), transcript variant 5, mRNA. (2012 bp)
Oorschot VM, Klumperman J and Verhage M. TITLE Quantification of synapse formation and maintenance in vivo in the absence of synaptic release JOURNAL Neuroscience 126 (1), 115-126 (2004) PUBMED 15145078 REFERENCE 9 (bases 1 to 2012) AUTHORS Sakaguchi G, Manabe T, Kobayashi K, Orita S, Sasaki T, Naito A, Maeda M, Igarashi H, Katsuura G, Nishioka H, Mizoguchi A, Itohara S, Takahashi T and Takai Y. TITLE Doc2alpha is an activity-dependent modulator of excitatory synaptic transmission JOURNAL Eur J Neurosci 11 (12), 4262-4268 (1999) PUBMED 10594652 REFERENCE 10 (bases 1 to 2012) AUTHORS Naito A,...
NM_001368358.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Saccharomyces cerevisiae S288C RUF20 (RUF20), ncRNA. (443 bp)
Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 2 (bases 1 to 443) AUTHORS Murakami,Y., Naitou,M., Hagiwara,H., Shibata,T., Ozawa,M., Sasanuma,S., Sasanuma,M., Tsuchiya,Y., Soeda,E., Yokoyama,K. et al. TITLE Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae JOURNAL Nat. Genet. 10 (3), 261-268 (1995) PUBMED 7670463 REFERENCE 3 (bases 1 to 443) CONSRTM NCBI...
NR_132173.1 - Saccharomyces cerevisiae S288C - NCBI
Saccharomyces cerevisiae S288C RUF21 (RUF21), ncRNA. (707 bp)
Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 2 (bases 1 to 707) AUTHORS Murakami,Y., Naitou,M., Hagiwara,H., Shibata,T., Ozawa,M., Sasanuma,S., Sasanuma,M., Tsuchiya,Y., Soeda,E., Yokoyama,K. et al. TITLE Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae JOURNAL Nat. Genet. 10 (3), 261-268 (1995) PUBMED 7670463 REFERENCE 3 (bases 1 to 707) CONSRTM NCBI...
NR_132172.1 - Saccharomyces cerevisiae S288C - NCBI
Mus musculus double C2, alpha (Doc2a), transcript variant 3, mRNA. (2282 bp)
Oorschot VM, Klumperman J and Verhage M. TITLE Quantification of synapse formation and maintenance in vivo in the absence of synaptic release JOURNAL Neuroscience 126 (1), 115-126 (2004) PUBMED 15145078 REFERENCE 9 (bases 1 to 2282) AUTHORS Sakaguchi G, Manabe T, Kobayashi K, Orita S, Sasaki T, Naito A, Maeda M, Igarashi H, Katsuura G, Nishioka H, Mizoguchi A, Itohara S, Takahashi T and Takai Y. TITLE Doc2alpha is an activity-dependent modulator of excitatory synaptic transmission JOURNAL Eur J Neurosci 11 (12), 4262-4268 (1999) PUBMED 10594652 REFERENCE 10 (bases 1 to 2282) AUTHORS Naito A,...
NM_001368356.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Danio rerio taste receptor, type 2, member 200, tandem duplicate 1 (tas2r200.1), mRNA. (963 bp)
Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates JOURNAL Mol Biol Evol 23 (5), 964-972 (2006) PUBMED 16484289 REFERENCE 4 (bases 1 to 963) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech Dev 122 (12), 1310-1321 (2005) PUBMED 16274966...
Synonym: tas2r1a
NM_001039830.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio taste receptor, type 2, member 200, tandem duplicate 2 (tas2r200.2), mRNA. (963 bp)
Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates JOURNAL Mol Biol Evol 23 (5), 964-972 (2006) PUBMED 16484289 REFERENCE 3 (bases 1 to 963) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech Dev 122 (12), 1310-1321 (2005) PUBMED 16274966 REFERENCE 4 (bases 1 to 963) AUTHORS Pfister P and Rodriguez I. TITLE Olfactory expression of a single and highly variable V1r...
Synonym: T2R2; TAS2R1b; tas2r2l
NM_001020505.1 - Danio rerio (zebrafish) - NCBI - UCSC
Saccharomyces cerevisiae S288C RUF23 (RUF23), ncRNA. (254 bp)
Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 2 (bases 1 to 254) AUTHORS Murakami,Y., Naitou,M., Hagiwara,H., Shibata,T., Ozawa,M., Sasanuma,S., Sasanuma,M., Tsuchiya,Y., Soeda,E., Yokoyama,K. et al. TITLE Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae JOURNAL Nat. Genet. 10 (3), 261-268 (1995) PUBMED 7670463 REFERENCE 3 (bases 1 to 254) CONSRTM NCBI...
NR_132175.1 - Saccharomyces cerevisiae S288C - NCBI
Saccharomyces cerevisiae S288C RUF22 (RUF22), ncRNA. (515 bp)
Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 2 (bases 1 to 515) AUTHORS Murakami,Y., Naitou,M., Hagiwara,H., Shibata,T., Ozawa,M., Sasanuma,S., Sasanuma,M., Tsuchiya,Y., Soeda,E., Yokoyama,K. et al. TITLE Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae JOURNAL Nat. Genet. 10 (3), 261-268 (1995) PUBMED 7670463 REFERENCE 3 (bases 1 to 515) CONSRTM NCBI...
NR_132174.1 - Saccharomyces cerevisiae S288C - NCBI
Saccharomyces cerevisiae S288C uncharacterized protein (YFR012W-A), partial mRNA. (87 bp)
Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 2 (bases 1 to 87) AUTHORS Murakami,Y., Naitou,M., Hagiwara,H., Shibata,T., Ozawa,M., Sasanuma,S., Sasanuma,M., Tsuchiya,Y., Soeda,E., Yokoyama,K. et al. TITLE Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae JOURNAL Nat. Genet. 10 (3), 261-268 (1995) PUBMED 7670463 REFERENCE 3 (bases 1 to 87) CONSRTM NCBI...
NM_001184472.1 - Saccharomyces cerevisiae S288C - NCBI
Rattus norvegicus cyclin G2 (Ccng2), mRNA. (2506 bp)
inference="alignment:Splign:2.1.0" exon 790..888 /gene="Ccng2" /inference="alignment:Splign:2.1.0" exon 889..1094 /gene="Ccng2" /inference="alignment:Splign:2.1.0" exon 1095..2472 /gene="Ccng2" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2506) AUTHORS Ohno S, Ikeda JI, Naito Y, Okuzaki D, Sasakura T, Fukushima K, Nishikawa Y, Ota K, Kato Y, Wang M, Torigata K, Kasama T, Uchihashi T, Miura D, Yabuta N, Morii E and Nojima H. TITLE Comprehensive phenotypic analysis of knockout mice deficient in cyclin G1 and cyclin G2 JOURNAL Sci Rep 6, 39091 (2016) PUBMED 27982046...
NM_001105725.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Takifugu rubripes taste 1 receptor member 2 (tas1r2), mRNA. (2538 bp)
tas1r1" /inference="alignment:Splign:2.1.0" exon 1492..1612 /gene="tas1r2" /gene_synonym="tas1r1" /inference="alignment:Splign:2.1.0" exon 1613..2538 /gene="tas1r2" /gene_synonym="tas1r1" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2538) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966...
Synonym: tas1r1
NM_001097625.1 - Takifugu rubripes (Fugu rubripes) - NCBI
Rattus norvegicus RecQ mediated genome instability 1 (Rmi1), transcript variant 1, mRNA. (2505 bp)
ORIGIN // REFERENCE 1 (bases 1 to 2505) AUTHORS Suwa A, Yoshino M, Yamazaki C, Naitou M, Fujikawa R, Matsumoto S, Kurama T, Shimokawa T and Aramori I. TITLE RMI1 deficiency in mice protects from diet and genetic-induced obesity JOURNAL FEBS J 277 (3), 677-686 (2010) PUBMED 20050919...
Synonym: RGD1310671
NM_001400626.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Saccharomyces cerevisiae S288C uncharacterized protein (YFL065C), partial mRNA. (309 bp)
Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 2 (bases 1 to 309) AUTHORS Murakami,Y., Naitou,M., Hagiwara,H., Shibata,T., Ozawa,M., Sasanuma,S., Sasanuma,M., Tsuchiya,Y., Soeda,E., Yokoyama,K. et al. TITLE Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae JOURNAL Nat. Genet. 10 (3), 261-268 (1995) PUBMED 7670463 REFERENCE 3 (bases 1 to 309) CONSRTM NCBI...
NM_001179902.1 - Saccharomyces cerevisiae S288C - NCBI
Saccharomyces cerevisiae S288C Min10p (MIN10), partial mRNA. (264 bp)
Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 2 (bases 1 to 264) AUTHORS Murakami,Y., Naitou,M., Hagiwara,H., Shibata,T., Ozawa,M., Sasanuma,S., Sasanuma,M., Tsuchiya,Y., Soeda,E., Yokoyama,K. et al. TITLE Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae JOURNAL Nat. Genet. 10 (3), 261-268 (1995) PUBMED 7670463 REFERENCE 3 (bases 1 to 264) CONSRTM NCBI...
NM_001184591.1 - Saccharomyces cerevisiae S288C - NCBI
Saccharomyces cerevisiae S288C uncharacterized protein (YFL019C), partial mRNA. (354 bp)
Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 2 (bases 1 to 354) AUTHORS Murakami,Y., Naitou,M., Hagiwara,H., Shibata,T., Ozawa,M., Sasanuma,S., Sasanuma,M., Tsuchiya,Y., Soeda,E., Yokoyama,K. et al. TITLE Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae JOURNAL Nat. Genet. 10 (3), 261-268 (1995) PUBMED 7670463 REFERENCE 3 (bases 1 to 354) CONSRTM NCBI...
NM_001348831.1 - Saccharomyces cerevisiae S288C - NCBI
Rattus norvegicus RecQ mediated genome instability 1 (Rmi1), transcript variant 2, mRNA. (3101 bp)
ORIGIN // REFERENCE 1 (bases 1 to 3101) AUTHORS Suwa A, Yoshino M, Yamazaki C, Naitou M, Fujikawa R, Matsumoto S, Kurama T, Shimokawa T and Aramori I. TITLE RMI1 deficiency in mice protects from diet and genetic-induced obesity JOURNAL FEBS J 277 (3), 677-686 (2010) PUBMED 20050919...
Synonym: RGD1310671
NM_001400627.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Saccharomyces cerevisiae S288C uncharacterized protein (YFR057W), partial mRNA. (456 bp)
Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 2 (bases 1 to 456) AUTHORS Murakami,Y., Naitou,M., Hagiwara,H., Shibata,T., Ozawa,M., Sasanuma,S., Sasanuma,M., Tsuchiya,Y., Soeda,E., Yokoyama,K. et al. TITLE Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae JOURNAL Nat. Genet. 10 (3), 261-268 (1995) PUBMED 7670463 REFERENCE 3 (bases 1 to 456) CONSRTM NCBI...
NM_001180022.3 - Saccharomyces cerevisiae S288C - NCBI

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]