GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2024-03-28 21:21:19, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Oryza sativa Japonica Group B-cell receptor-associated protein 31 (LOC4329170), mRNA. (1252 bp)
gcctccacgctctacagcatggccgagatcagcggccgcgccgggggagaccccgaatccggcggcggcggcggcggcgcctccctctcgcccaccgaccaggtcctcttctcgcggcacctcctcgaggcatccctcatggggtattccttatttcttgctctagttattgaccggctccaccaatacatcagagagctacgtgggctaaagaagaatgttgaggccgtaactaagcataataaaatgttggaggaagcaaaacatggaagatctgaggagacaaagaaataccaagaagagattggtgctctcaatgaggatatgaagaaactgaagctacaagtccaagaaaagacagaggaagtccacgttgctgaggacaaggctcttgctattcggaaacaatctgaaagcctgctgcttgagtatgaccgtttgctggaggacaaccagcatctccgggagcagctgcagtcaattgaccacaggctctccagtccaaaataagttcaagtgtaatatttttttttcctatgggattggagaacctagtcaatatattgctgcagaaaattttccatcacagttttggaaaaa...
position 708
XM_015767827.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346684 (LOC4346684), mRNA. (1328 bp)
gcctcctcgccgccgtcgcgacctcccccaagtgagacgtcacggcacggcaccgcacggtgggcaggtgtgaatacggtttattagtcttccaggtgggccccacctgtcagtgggggaaataagggtgatggccatttgggagggttggtgtggtgtggtggtgatggggagattgattgatttagctggtgggatttgcaatatttaggaagaaaattaatcaaagtgatttaaaaaatttggaggatgtagggggcaatgatttagctgttgcactgcatcagaaattcgcaagaagagattggagatttttcacatcggttgatggtgatcacacattggggatgatgatgatgatgatgatctattcatgtatgtacaattaattactagcttttgtaccaccattaattctttgattcatgttgtggtgatcaacaacaacagagatgagaatgataaaatgggaaaagcatcattaccactctttttctagtctttccagtccattttgtcatatgccccctacacattcttcgattttaacttaa
position 1069
XM_015795982.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group aspartic proteinase-like (LOC4337744), transcript variant 2, mRNA. (1884 bp)
PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] ggcttccccactctctcttcttcttgggaggctgggagctaccagcacaacacaccaaggaagctgagcaggtgcgttgatttcttgatatcatggccaagaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttcatgcttcctctgatgggttcctgagagtcaacctcaacaagaagagattggacaaggaagatctcactgccgccaagttggcgcagcagggcaaccgtcttctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccagtactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacactggaagctccaacctgtgggttccttcagcaaaatgctatttttcgatagcatgctacctccacagcagatacaactcgaaaaagtcgagctcttacaaagcagatggagaaacttgcaaaattacatacggttctggggcaatttctggattct...
position 197
Synonym: OJ1127_B08.13; RAP
NM_001420155.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group aspartic proteinase-like (LOC4337744), transcript variant 1, mRNA. (1980 bp)
gttactctgatgaagtctcaagagaagaaagagaagaggttgctgtatttatcgtctttgtcctcatctttctttcttgctttcctctaccttgactttggcttccccactctctcttcttcttgggaggctgggagctaccagcacaacacaccaaggaagctgaggtgcgttgatttcttgatatcatggccaagaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttcatgcttcctctgatgggttcctgagagtcaacctcaacaagaagagattggacaaggaagatctcactgccgccaagttggcgcagcagggcaaccgtcttctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccagtactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacactggaagctccaacctgtgggttccttcagcaaaatgctatttttcgatagcatgctacctccacagcagatacaactcgaaaaagtcgagctcttacaaagcagatggagaaacttgcaaaatta...
position 293
Synonym: OJ1127_B08.13; RAP
NM_001420154.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group aspartic proteinase-like (LOC4337744), mRNA. (2009 bp)
ttccccactctctcttcttcttgggaggctgggagctaccagcacaacacaccaaggaagctgaggtgagaacgattgattactttgctggctgctcttagctactactacaactgttttgtcttaatcggttgattacatctcatatttcatcggtttagctcgctctgtgcgttgatttcttgatatcatggccaagaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttcatgcttcctctgatgggttcctgagagtcaacctcaacaagaagagattggacaaggaagatctcactgccgccaagttggcgcagcagggcaaccgtcttctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccagtactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacactggaagctccaacctgtgggttccttcagcaaaatgctatttttcgatagcatgctacctccacagcagatacaactcgaaaaagtcgagctcttacaaagcagatggagaaacttgcaaaat...
position 362
XM_026025509.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4327456), transcript variant X5, mRNA. (2828 bp)
gcagacctatacttcaagagcaggcccgatcttataaaccatgtagaggagacatatagatcttaccaggcgcttgctgatagatatgaccgggtatcaggggagcttcacaagtccaaccacaccatagcaactgcatttccggagcaagtccagctctctctgcaagatgacaatggtgatggtttcccaaaaggtatcacagggattaatatcaacagaggaaccagcgcagctccaaagaggacgcaaacacataaaaagatcagctctaagatgagtaaagacaaggcacaagaagagattgagaggctacagaagaaaatccttgtcttgcagactgaaaaggaattcttcaagagctcatatgaatcttcgctgaacaagtatttgagcattgaaagacaggcggcagagatgcaagaggaggtatggagcttgcaggagacttttagcaccagcgcagttattgaagacaatgaagctcgagctttaatggctgcacaagcccttatttcttgcgaggataaattggctagcttgcattgtgagcaaaagagatcatatgaagagacaaccatggagattcaaagagtcata...
position 474
XM_015768273.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4327456), transcript variant X4, mRNA. (2981 bp)
gcagacctatacttcaagagcaggcccgatcttataaaccatgtagaggagacatatagatcttaccaggcgcttgctgatagatatgaccgggtatcaggggagcttcacaagtccaaccacaccatagcaactgcatttccggagcaagtccagctctctctgcaagatgacaatggtgatggtttcccaaaaggtatcacagggattaatatcaacagaggaaccagcgcagctccaaagaggacgcaaacacataaaaagatcagctctaagatgagtaaagacaaggcacaagaagagattgagaggctacagaagaaaatccttgtcttgcagactgaaaaggaattcttcaagagctcatatgaatcttcgctgaacaagtatttgagcattgaaagacaggcggcagagatgcaagaggaggtatggagcttgcaggagacttttagcaccagcgcagttattgaagacaatgaagctcgagctttaatggctgcacaagcccttatttcttgcgaggataaattggctagcttgcattgtgagcaaaagagatcatatgaagagacaaccatggagattcaaagagtcata...
position 745
XM_015768261.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4327456), transcript variant X1, mRNA. (3146 bp)
gcagacctatacttcaagagcaggcccgatcttataaaccatgtagaggagacatatagatcttaccaggcgcttgctgatagatatgaccgggtatcaggggagcttcacaagtccaaccacaccatagcaactgcatttccggagcaagtccagctctctctgcaagatgacaatggtgatggtttcccaaaaggtatcacagggattaatatcaacagaggaaccagcgcagctccaaagaggacgcaaacacataaaaagatcagctctaagatgagtaaagacaaggcacaagaagagattgagaggctacagaagaaaatccttgtcttgcagactgaaaaggaattcttcaagagctcatatgaatcttcgctgaacaagtatttgagcattgaaagacaggcggcagagatgcaagaggaggtatggagcttgcaggagacttttagcaccagcgcagttattgaagacaatgaagctcgagctttaatggctgcacaagcccttatttcttgcgaggataaattggctagcttgcattgtgagcaaaagagatcatatgaagagacaaccatggagattcaaagagtcata...
position 792
XM_015768253.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4327456), transcript variant X3, misc_RNA. (3765 bp)
gcagacctatacttcaagagcaggcccgatcttataaaccatgtagaggagacatatagatcttaccaggcgcttgctgatagatatgaccgggtatcaggggagcttcacaagtccaaccacaccatagcaactgcatttccggagcaagtccagctctctctgcaagatgacaatggtgatggtttcccaaaaggtatcacagggattaatatcaacagaggaaccagcgcagctccaaagaggacgcaaacacataaaaagatcagctctaagatgagtaaagacaaggcacaagaagagattgagaggctacagaagaaaatccttgtcttgcagactgaaaaggaattcttcaagagctcatatgaatcttcgctgaacaagtatttgagcattgaaagacaggcggcagagatgcaagaggaggtatggagcttgcaggagacttttagcaccagcgcagttattgaagacaatgaagctcgagctttaatggctgcacaagcccttatttcttgcgaggataaattggctagcttgcattgtgagcaaaagagatcatatgaagagacaaccatggagattcaaagagtcata...
position 745
XR_001542944.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g03100, mitochondrial (LOC9269715), transcript variant X6, mRNA. (3912 bp)
agctgcacttctgaaagacgctcaacaagcaggtattcagcttgatccaagctgctatgaggatttgatacaatccagagcacatcacaataataccacaggtgctctcaatctttttaaagagttgaagagtttgaatattttgaaagctggtcagaatgaatttgagatgttagtacaaggctgcaataacaatggagctgctttgacaactaagctagtggaggaagtcagaagtggccacccggttaatcatgctattcatgactggaataatgttatccatttcttctgcaagaagagattgatgcatgatgctcacaaagcacttggcaagatgaaagctttaggacacacgccaaatgcacagacattccattctttagtaactggttatgctgctgttggtggtaaatatgtagaggtgacagatttgtggggtgaaatgaaagttttggccacctcaagttcaatgaattttgatcaagagctcctggactctctgctgtattgctttgtgagaggcggtttcttccttcgagccatggaagttatagaaatgatggaaaaaggcaagatgtttatagacaaatacaagta...
position 2003
XM_026020801.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g03100, mitochondrial (LOC9269715), transcript variant X2, mRNA. (4042 bp)
agctgcacttctgaaagacgctcaacaagcaggtattcagcttgatccaagctgctatgaggatttgatacaatccagagcacatcacaataataccacaggtgctctcaatctttttaaagagttgaagagtttgaatattttgaaagctggtcagaatgaatttgagatgttagtacaaggctgcaataacaatggagctgctttgacaactaagctagtggaggaagtcagaagtggccacccggttaatcatgctattcatgactggaataatgttatccatttcttctgcaagaagagattgatgcatgatgctcacaaagcacttggcaagatgaaagctttaggacacacgccaaatgcacagacattccattctttagtaactggttatgctgctgttggtggtaaatatgtagaggtgacagatttgtggggtgaaatgaaagttttggccacctcaagttcaatgaattttgatcaagagctcctggactctctgctgtattgctttgtgagaggcggtttcttccttcgagccatggaagttatagaaatgatggaaaaaggcaagatgtttatagacaaatacaagta...
position 2003
XM_026020798.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g03100, mitochondrial (LOC9269715), transcript variant X5, mRNA. (4055 bp)
agctgcacttctgaaagacgctcaacaagcaggtattcagcttgatccaagctgctatgaggatttgatacaatccagagcacatcacaataataccacaggtgctctcaatctttttaaagagttgaagagtttgaatattttgaaagctggtcagaatgaatttgagatgttagtacaaggctgcaataacaatggagctgctttgacaactaagctagtggaggaagtcagaagtggccacccggttaatcatgctattcatgactggaataatgttatccatttcttctgcaagaagagattgatgcatgatgctcacaaagcacttggcaagatgaaagctttaggacacacgccaaatgcacagacattccattctttagtaactggttatgctgctgttggtggtaaatatgtagaggtgacagatttgtggggtgaaatgaaagttttggccacctcaagttcaatgaattttgatcaagagctcctggactctctgctgtattgctttgtgagaggcggtttcttccttcgagccatggaagttatagaaatgatggaaaaaggcaagatgtttatagacaaatacaagta...
position 2003
XM_026020800.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g03100, mitochondrial (LOC9269715), transcript variant X3, mRNA. (4100 bp)
agctgcacttctgaaagacgctcaacaagcaggtattcagcttgatccaagctgctatgaggatttgatacaatccagagcacatcacaataataccacaggtgctctcaatctttttaaagagttgaagagtttgaatattttgaaagctggtcagaatgaatttgagatgttagtacaaggctgcaataacaatggagctgctttgacaactaagctagtggaggaagtcagaagtggccacccggttaatcatgctattcatgactggaataatgttatccatttcttctgcaagaagagattgatgcatgatgctcacaaagcacttggcaagatgaaagctttaggacacacgccaaatgcacagacattccattctttagtaactggttatgctgctgttggtggtaaatatgtagaggtgacagatttgtggggtgaaatgaaagttttggccacctcaagttcaatgaattttgatcaagagctcctggactctctgctgtattgctttgtgagaggcggtttcttccttcgagccatggaagttatagaaatgatggaaaaaggcaagatgtttatagacaaatacaagta...
position 2003
XM_015759312.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g03100, mitochondrial (LOC9269715), transcript variant X1, mRNA. (4187 bp)
agctgcacttctgaaagacgctcaacaagcaggtattcagcttgatccaagctgctatgaggatttgatacaatccagagcacatcacaataataccacaggtgctctcaatctttttaaagagttgaagagtttgaatattttgaaagctggtcagaatgaatttgagatgttagtacaaggctgcaataacaatggagctgctttgacaactaagctagtggaggaagtcagaagtggccacccggttaatcatgctattcatgactggaataatgttatccatttcttctgcaagaagagattgatgcatgatgctcacaaagcacttggcaagatgaaagctttaggacacacgccaaatgcacagacattccattctttagtaactggttatgctgctgttggtggtaaatatgtagaggtgacagatttgtggggtgaaatgaaagttttggccacctcaagttcaatgaattttgatcaagagctcctggactctctgctgtattgctttgtgagaggcggtttcttccttcgagccatggaagttatagaaatgatggaaaaaggcaagatgtttatagacaaatacaagta...
position 2003
XM_015759311.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g03100, mitochondrial (LOC9269715), transcript variant X4, mRNA. (4625 bp)
agctgcacttctgaaagacgctcaacaagcaggtattcagcttgatccaagctgctatgaggatttgatacaatccagagcacatcacaataataccacaggtgctctcaatctttttaaagagttgaagagtttgaatattttgaaagctggtcagaatgaatttgagatgttagtacaaggctgcaataacaatggagctgctttgacaactaagctagtggaggaagtcagaagtggccacccggttaatcatgctattcatgactggaataatgttatccatttcttctgcaagaagagattgatgcatgatgctcacaaagcacttggcaagatgaaagctttaggacacacgccaaatgcacagacattccattctttagtaactggttatgctgctgttggtggtaaatatgtagaggtgacagatttgtggggtgaaatgaaagttttggccacctcaagttcaatgaattttgatcaagagctcctggactctctgctgtattgctttgtgagaggcggtttcttccttcgagccatggaagttatagaaatgatggaaaaaggcaagatgtttatagacaaatacaagta...
position 2003
XM_026020799.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4327456), transcript variant X2, misc_RNA. (4956 bp)
gcagacctatacttcaagagcaggcccgatcttataaaccatgtagaggagacatatagatcttaccaggcgcttgctgatagatatgaccgggtatcaggggagcttcacaagtccaaccacaccatagcaactgcatttccggagcaagtccagctctctctgcaagatgacaatggtgatggtttcccaaaaggtatcacagggattaatatcaacagaggaaccagcgcagctccaaagaggacgcaaacacataaaaagatcagctctaagatgagtaaagacaaggcacaagaagagattgagaggctacagaagaaaatccttgtcttgcagactgaaaaggaattcttcaagagctcatatgaatcttcgctgaacaagtatttgagcattgaaagacaggcggcagagatgcaagaggaggtatggagcttgcaggagacttttagcaccagcgcagttattgaagacaatgaagctcgagctttaatggctgcacaagcccttatttcttgcgaggataaattggctagcttgcattgtgagcaaaagagatcatatgaagagacaaccatggagattcaaagagtcata...
position 745
XR_003240207.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Data Export:

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/os/caagaagagattg
lang : en | div : | spe : os | query_string : caagaagagattg | format : html | download :

0.000 | 0.000 | search_start;
0.081 | 0.080 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?source=Oryza sativa Japonica Group (Japanese rice)?to=0&format=json
0.130 | 0.050 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?source=Oryza sativa Japonica Group (Japanese rice)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.132 | 0.002 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]