LOCUS       NM_001420154            1980 bp    mRNA    linear   PLN 24-NOV-2023
DEFINITION  Oryza sativa Japonica Group aspartic proteinase-like (LOC4337744),
            transcript variant 1, mRNA.
ACCESSION   NM_001420154
VERSION     NM_001420154.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1980)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 1980)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI626837.1, CA755100.1, CB672108.1, CB651775.1, CB638132.1 and
            CI516736.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: D12777.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-379               CI626837.1         2-380
            380-741             CA755100.1         258-619
            742-1162            CB672108.1         364-784
            1163-1232           CB651775.1         650-719             c
            1233-1810           CB638132.1         76-653              c
            1811-1980           CI516736.1         219-388
FEATURES             Location/Qualifiers
     source          1..1980
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="5"
                     /map="5"
     gene            1..1980
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /note="aspartic proteinase-like"
                     /db_xref="GeneID:4337744"
     exon            1..167
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /inference="alignment:Splign:2.1.0"
     exon            168..521
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    174..176
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /note="upstream in-frame stop codon"
     CDS             189..1679
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /EC_number="3.4.23.-"
                     /note="aspartic proteinase; LOC_Os05g04630"
                     /codon_start=1
                     /product="aspartic proteinase precursor"
                     /protein_id="NP_001407083.1"
                     /db_xref="GeneID:4337744"
                     /translation="

MAKRHLLLVTTCLWALSCALLLHASSDGFLRVNLNKKRLDKEDLTAAKLAQQGNRLLKTGSSDSDPVPLVDYLNTQYYGVIGLGSPPQNFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYNSKKSSSYKADGETCKITYGSGAISGFFSKDNVLVGDLVVKNQKFIEATRETSVTFIIGKFDGILGLGYPEISVGKAPPIWQSMQEQELLADDVFSFWLNRDPDASSGGELVFGGMDPKHYKGDHTYVPVSRKGYWQFNMGDLLIDGHSTGFCAKGCAAIVDSGTSLLAGPTAIVAQVNHAIGAEGIISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLCMFDGKRSVSNGIESVVDKENLGSDAMCSVCEMAVVWIENQLRENKTKELILNYANQLCERLPSPNGESTVSCHQISKMPNLAFTIANKTFILTPEQYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDVFMGAYHTVFDFGKDRIGFAKSA"

     sig_peptide     189..260
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /note="/evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (P42211.2)"
     mat_peptide     366..1676
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /product="Aspartic proteinase. /id=PRO_0000025911"
                     /note="propagated from UniProtKB/Swiss-Prot (P42211.2)"
     misc_feature    1347..1349
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255|PROSITE-ProRule:PRU00415; propagated
                     from UniProtKB/Swiss-Prot (P42211.2); glycosylation site"
     exon            522..582
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /inference="alignment:Splign:2.1.0"
     exon            583..677
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /inference="alignment:Splign:2.1.0"
     exon            678..790
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /inference="alignment:Splign:2.1.0"
     exon            791..1064
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1065..1178
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1179..1243
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1244..1385
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1386..1505
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1506..1594
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1595..1962
                     /gene="LOC4337744"
                     /gene_synonym="OJ1127_B08.13; RAP"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gttactctgatgaagtctcaagagaagaaagagaagaggttgctgtatttatcgtctttgtcctcatctttctttcttgctttcctctaccttgactttggcttccccactctctcttcttcttgggaggctgggagctaccagcacaacacaccaaggaagctgaggtgcgttgatttcttgatatcatggccaagaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttcatgcttcctctgatgggttcctgagagtcaacctcaacaagaagagattggacaaggaagatctcactgccgccaagttggcgcagcagggcaaccgtcttctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccagtactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacactggaagctccaacctgtgggttccttcagcaaaatgctatttttcgatagcatgctacctccacagcagatacaactcgaaaaagtcgagctcttacaaagcagatggagaaacttgcaaaattacatacggttctggggcaatttctggattcttcagtaaggataatgtgttggttggagaccttgtagtgaaaaaccagaagttcattgaggcaacacgcgaaacaagcgttacctttatcatcggaaagtttgatggaattcttggtcttggctaccctgaaatctctgttgggaaagctcctccgatttggcagagcatgcaggagcaggaactgcttgcagatgatgtcttctcgttttggctgaaccgagacccggatgcatcctctggtggtgagctcgtctttggtggcatggatccgaagcattataagggggatcacacctacgtccctgtttcccgcaaaggctactggcagtttaacatgggggatctccttattgatggccactcaactggcttctgtgcaaaaggctgtgctgctattgtcgactccggaacttccttgcttgctggtccaacagctatagttgctcaggtgaaccatgctattggggctgaaggaatcatcagcacggaatgcaaagaagtggttagcgagtatggagagatgatcctcaacttgctcatagcacagacagatccgcagaaagtatgcagccaggttggtctgtgtatgtttgacggtaaacgctcagtaagcaatgggattgaatctgttgtcgacaaagaaaacttgggttctgatgctatgtgttcagtttgtgagatggctgttgtgtggatagagaaccagctacgcgaaaataaaacgaaggagctgatattgaattatgctaatcagttatgtgagcgtctaccaagccccaatggagaatcaactgtcagctgccatcaaatctcgaagatgcctaatcttgcattcaccattgcaaacaagacatttattcttacaccagagcagtacatcgtgaaactggagcaaggagggcaaaccgtctgcatcagcgggttcatggcgttcgacatacctccaccacgcggtcctctttggattcttggagatgtcttcatgggtgcttatcatacggttttcgacttcggcaaagacaggatcgggttcgctaaatctgcatgaagagtgtatgtagatcactcttcagatcacggagattagcctgtatatttcataagctgaaaccaaacatgtatggttttatgatatatagtagctagtacacggacaaacctctttggttgcttctttctgaagaaaaaagaagaacagacatggatgtatgatctacctgatgtgtataaattgaatgatgcagtctgagaaataatcctctgatcatattgtggattctgaaatatatccgagtttcttttttcaacaaagatgatgcgttccaagtgtaaaaaaaaaaaaaaaaaaa

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