2024-05-19 22:53:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001402380 1584 bp mRNA linear PLN 31-DEC-2022 DEFINITION Oryza sativa Japonica Group 26S proteasome non-ATPase regulatory subunit 6-like (LOC4336206), mRNA. ACCESSION NM_001402380 XM_015780316 VERSION NM_001402380.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1584) AUTHORS Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E, Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang GL. TITLE Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction JOURNAL Plant Physiol 138 (1), 105-115 (2005) PUBMED 15888683 REFERENCE 2 (bases 1 to 1584) AUTHORS Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T, Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y, Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M, Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K, Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N, Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki T, Yoshino M, Hayashizaki Y and Yasunishi A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI585415.1, CB650738.1, CB664296.1 and CI520796.1. On Mar 11, 2022 this sequence version replaced XM_015780316.2. ##Evidence-Data-START## Transcript exon combination :: AK068887.1, AB037149.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-411 CI585415.1 1-411 412-774 CB650738.1 371-733 775-1431 CB664296.1 86-742 c 1432-1584 CI520796.1 225-377 FEATURES Location/Qualifiers source 1..1584 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="4" /map="4" gene 1..1584 /gene="LOC4336206" /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7" /note="26S proteasome non-ATPase regulatory subunit 6-like" /db_xref="GeneID:4336206" exon 1..271 /gene="LOC4336206" /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7" /inference="alignment:Splign:2.1.0" misc_feature 13..15 /gene="LOC4336206" /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7" /note="upstream in-frame stop codon" CDS 127..1296 /gene="LOC4336206" /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7" /note="26S proteasome regulatory particle non-ATPase subunit7; 26S proteasome regulatory particle non-ATPase subunit 7; 26S proteasome regulatory subunit RPN7; LOC_Os04g40850; OSJNBa0081L15.15" /codon_start=1 /product="26S proteasome non-ATPase regulatory subunit 6" /protein_id="NP_001389309.1" /db_xref="GeneID:4336206" /translation="
MDGGVGEEGKQQPHLVLAHKLFLLSHPDVDDLAKVDLRADVLAAVKSDDMASLYESLGAGGVLETDAALLAEMRGRIEEEIRKLDEKIADAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTEGKTVAVGQKMDLVFHTLQIGFFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSVISLDRVSLKAKVVDAPEILAVIGKVPHLSEFLNSLYNCQYKSFFAAFSGLTEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCKIDKVACVLETNRPDARNAFYQATIKQGDFLLNRIQKLSRVIDL"
misc_feature 145..1272 /gene="LOC4336206" /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7" /note="26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]; Region: RPN7; COG5187" /db_xref="CDD:227514" exon 272..386 /gene="LOC4336206" /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7" /inference="alignment:Splign:2.1.0" exon 387..477 /gene="LOC4336206" /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7" /inference="alignment:Splign:2.1.0" exon 478..623 /gene="LOC4336206" /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7" /inference="alignment:Splign:2.1.0" exon 624..843 /gene="LOC4336206" /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7" /inference="alignment:Splign:2.1.0" exon 844..952 /gene="LOC4336206" /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7" /inference="alignment:Splign:2.1.0" exon 953..1121 /gene="LOC4336206" /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7" /inference="alignment:Splign:2.1.0" exon 1122..1576 /gene="LOC4336206" /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7" /inference="alignment:Splign:2.1.0" ORIGIN
ggaggacgaaactagccttctctccttctctctcgtgttctctcccaatctcttcttgcggcggaagcaaagcgagaagcgaggcgactcttctccggcggcggcggcggcggaagcggcggcgagatggacggcggcgtaggcgaggaagggaagcagcagccgcacctggtgctggcgcacaagctgttcctgctctcgcacccggacgtggacgacctcgccaaggtcgacctccgcgccgatgtcctcgccgcagtcaaatccgatgatatggcgtctctgtacgagtcgctgggggccggcggcgtgctggagacggacgctgcgctgctcgcggagatgcgcggcaggatcgaggaggagatccggaagcttgacgagaagatcgctgatgctgaagagaatttgggtgagagtgaagtgcgtgaagcccatctagccaaatcgttgtatttcataagggttggagagaaggagaaggcactagaacagcttaaagttactgaaggaaaaactgtagctgttgggcaaaagatggaccttgttttccacactttacagattgggtttttctatatggattttgatctcatctctaagtctattgacaaagccaaaaaattgtttgaggagggtggtgattgggagaggaagaacagattgaaagtgtacgagggcttatactgcatggccactagaaacttcaagaaagctgcaagcttatttttggattcaatttcaacattcacaacctatgagttgttcccctatgatacattcatattctacacagttcttacaagtgttatctcattggatcgtgtatccctaaaggcaaaggttgtagatgcacctgagatcctggctgtaattggcaaagtacctcacctctctgagtttctcaactccctctacaattgccagtacaagtcattttttgccgcattctctggcttgacggagcagatcaagttagaccgttacctgcagcctcatttccgttactacatgcgtgaagtccgtactgttgtctattcacaattcctcgagtcctacaagagtgtgacgatggaagcaatggcttctgcatttggtgtgaccgttgatttcatagacctggaattgtcacgcttcattgctgctggaaagctccactgcaagatcgataaggttgcttgcgtcctggagacgaaccggcctgatgccagaaatgctttctaccaggcaaccatcaagcaaggggacttcctgctgaaccgcatccagaagctatcacgagtcattgacctgtaggtgttagtgttggagctggtgcttgccaaaactctgctcgagctcccccgcacgagtaacttatttgctttggtcccaggggactacgaacagtacttgacttcgcattcgaagtaggttacgaggaaagagagcttaacaaaatcagcgttaaatctgagaatttgagcttatgtaacctactatatggatcgatgaaagttcagacccgttgtttctagactctcttctgtgatgaattcatccatttatttcatatcggtgatcatttgtgtttccaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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