LOCUS       NM_001402084            2158 bp    mRNA    linear   PLN 01-JAN-2023
DEFINITION  Oryza sativa Japonica Group inositol-3-phosphate synthase 1-like
            (LOC4331917), transcript variant 2, mRNA.
ACCESSION   NM_001402084 XM_026024146
VERSION     NM_001402084.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2158)
  AUTHORS   Perera I, Fukushima A, Akabane T, Horiguchi G, Seneweera S and
            Hirotsu N.
  TITLE     Expression regulation of myo-inositol 3-phosphate synthase 1 (INO1)
            in determination of phytic acid accumulation in rice grain
  JOURNAL   Sci Rep 9 (1), 14866 (2019)
   PUBMED   31619750
  REMARK    GeneRIF: Expression regulation of myo-inositol 3-phosphate synthase
            1 (INO1) in determination of phytic acid accumulation in rice
            grain.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2158)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   3  (bases 1 to 2158)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
REFERENCE   4  (bases 1 to 2158)
  AUTHORS   Yoshida KT, Wada T, Koyama H, Mizobuchi-Fukuoka R and Naito S.
  TITLE     Temporal and spatial patterns of accumulation of the transcript of
            Myo-inositol-1-phosphate synthase and phytin-containing particles
            during seed development in rice
  JOURNAL   Plant Physiol 119 (1), 65-72 (1999)
   PUBMED   9880347
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI309041.1, AK058750.1, CB682609.1, CB682610.1, CI098456.1,
            AP014959.1 and CI115682.1.
            
            On Mar 5, 2022 this sequence version replaced XM_026024146.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN02716058,
                              SAMN03003175 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-467               CI309041.1         1-467
            468-898             AK058750.1         326-756
            899-1273            CB682609.1         1-375
            1274-1592           CB682610.1         517-835             c
            1593-1614           CI098456.1         1-22
            1615-1617           AP014959.1         4826239-4826241     c
            1618-1675           CI098456.1         26-83
            1676-1682           AP014959.1         4826174-4826180     c
            1683-1910           CI098456.1         91-318
            1911-1913           AP014959.1         4825861-4825863     c
            1914-1919           CI098456.1         322-327
            1920-2158           CI115682.1         259-497
FEATURES             Location/Qualifiers
     source          1..2158
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     gene            1..2158
                     /gene="LOC4331917"
                     /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1"
                     /note="inositol-3-phosphate synthase 1-like"
                     /db_xref="GeneID:4331917"
     exon            1..442
                     /gene="LOC4331917"
                     /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    156..158
                     /gene="LOC4331917"
                     /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1"
                     /note="upstream in-frame stop codon"
     CDS             255..1712
                     /gene="LOC4331917"
                     /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1"
                     /EC_number="5.5.1.4"
                     /note="isoform 2 is encoded by transcript variant 2;
                     myo-inositol phosphate synthase; LOC_Os03g09250; MIP
                     synthase 1; inositol-3-phosphate synthase 1; MI-1-P
                     synthase; Myo-inositol 1-phosphate synthase"
                     /codon_start=1
                     /product="inositol-3-phosphate synthase 1 isoform 2"
                     /protein_id="NP_001389013.1"
                     /db_xref="GeneID:4331917"
                     /translation="

MFIESFRVESPHVRYGAAEIESDYQYDTTELVHESHDGASRWIVRPKSVRYNFRTTTTVPKLGVMLVGWGGNNGSTLTAGVIANREGISWATKDKVQQANYYGSLTQASTIRVGSYNGEEIYAPFKSLLPMVNPDDLVFGGWDISNMNLADAMTRAKVLDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKGTKKEQMEQIIKDIREFKEKSKVDKVVVLWTANTERYSNVCVGLNDTMENLLASVDKNEAEISPSTLYAIACVMEGIPFINGSPQNTFVPGLIDLAIKNNCLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNAILYELGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKSTIVLHNTCEDSLLAAPIILDLVLLAELSTRIQLKAEGEEKFHSFHPVATILSYLTKAPLVSAYMHLFLLAHQW"

     misc_feature    255..1670
                     /gene="LOC4331917"
                     /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1"
                     /note="inositol-3-phosphate synthase; Region: PLN02438"
                     /db_xref="CDD:178057"
     exon            443..511
                     /gene="LOC4331917"
                     /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1"
                     /inference="alignment:Splign:2.1.0"
     exon            512..647
                     /gene="LOC4331917"
                     /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1"
                     /inference="alignment:Splign:2.1.0"
     exon            648..895
                     /gene="LOC4331917"
                     /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1"
                     /inference="alignment:Splign:2.1.0"
     exon            896..1122
                     /gene="LOC4331917"
                     /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1"
                     /inference="alignment:Splign:2.1.0"
     exon            1123..1238
                     /gene="LOC4331917"
                     /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1"
                     /inference="alignment:Splign:2.1.0"
     exon            1239..1415
                     /gene="LOC4331917"
                     /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1"
                     /inference="alignment:Splign:2.1.0"
     exon            1416..1604
                     /gene="LOC4331917"
                     /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1"
                     /inference="alignment:Splign:2.1.0"
     exon            1605..1687
                     /gene="LOC4331917"
                     /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1"
                     /inference="alignment:Splign:2.1.0"
     exon            1688..2158
                     /gene="LOC4331917"
                     /gene_synonym="INO1; INO1-1; IPS; OsINO1-1; RINO1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

attgcgctcccaccggcggccggagtcgtctcccaatccgacccaaggtggggaccaccctcctgctcggtgggcccgagcagcccggccaagtggccgccgaaacccgctataaatcccccacgctccaccagcctccgattccacagcctacctagcttctccttctcgctcgcttcgcccgcataagtctagccacaaacccgccgccgccgccgccgccgccgccgctagcttccgcggagcggggcgagatgttcatcgagagcttccgcgtggagagcccgcacgtgcggtacggcgcggcggagatcgagtcggactaccagtacgacacgacggagctggtgcacgagagccacgacggcgcctcccgctggatcgtccgccccaagtccgtccgctacaacttccggaccaccaccaccgtccccaagctcggggtgatgctcgtggggtggggcggcaacaacggctcaacgctgacggctggggtcatcgccaacagggagggaatctcatgggcgaccaaggacaaggtgcagcaagccaactactatggctcactcacccaggcgtccaccatcagggtcgggagctacaacggggaggagatctacgcgcccttcaagagcctcctgcccatggtgaaccctgatgaccttgtgttcgggggctgggacattagcaacatgaacctggctgatgctatgaccagggcaaaggtacttgacattgatctgcagaagcagctcagaccttacatggagtccatggtgcctctccccggcatctatgaccccgacttcatcgccgccaaccagggatcccgcgcgaacaatgtcatcaagggcaccaagaaggagcagatggagcagatcatcaaggacatcagggagttcaaggaaaagagcaaagtggacaaggtggtggtgttgtggactgcaaacactgaaaggtacagcaatgtctgtgttgggctcaatgacacaatggagaacctcctggcgtctgtggacaagaacgaggcggagatatcaccatcgacactgtatgccattgcctgcgtcatggagggtataccgttcattaacgggagtcctcagaacacctttgtgcctgggctgatcgatcttgctattaagaacaactgcctgattggtggtgatgatttcaagagtggacagacaaagatgaagtctgtcttggttgatttcctagttggtgctggaataaagcccacctcaattgtcagctacaaccacttggggaataatgatggcatgaacctttccgcacctcaaacattccgatccaaggagatctccaagagcaatgtggtcgatgacatggtctcaagcaatgccatcctctatgagcttggcgagcatcctgatcatgttgttgtgatcaagtatgtgccgtatgttggagacagcaagagggcaatggacgagtacacctcagagatcttcatggggggtaagagcaccatcgttctgcacaacacctgtgaggactcactccttgccgcgccgatcattcttgatctggtgctccttgccgagctcagcaccaggattcagctgaaagccgagggggaggagaagttccattccttccatccagtggctaccatcctgagctacctcaccaaggcaccccttgtgagtgcatacatgcatctgttcctcctggcacaccagtggtgaacgccctggcaaagcagagggcaatgcttgagaacatcatgagggcctgcgttgggctggcccccgagaacaacatgatcctggagtacaagtgagggaggctgccgaggccgagcagccgtggcatgtggcaaagaggcgaatgggatggagcaagaaagacgtgattagctagctctaagaattgttttagcttctcttgtgatttttcggtctttcccattcttaaccttctgtgctttgtgtgagactcttatcgggctatgcaactagcagcagccttactatggtactggatgatgttatggagaatgttagctagttcccctctatttataacttattagtatcggagatttcagttcatcgctgactttgtgctgagcgttttattattttctcgccttgtaacataaccaattcccccttctctgttgtgtgctaaa

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