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2024-04-20 10:58:19, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Mus musculus selenoprotein S (Selenos), transcript variant 2, mRNA. (1237 bp)
db_xref="taxon:10090" /chromosome="7" /map="7 35.49 cM" gene 1..1237 /gene="Selenos" /gene_synonym="1500011E07Rik; H-4; H-47; H4; H47; Sels; Seps1; Vimp" /note="selenoprotein S" /db_xref="GeneID:109815" /db_xref="MGI:MGI:95994" exon 1..170 /gene="Selenos" /gene_synonym="1500011E07Rik; H-4; H-47;...IRE1alpha-XBP1 pathway. REFERENCE 4 (bases 1 to 1237) AUTHORS Men L, Sun J and Ren D. TITLE Deficiency of VCP-Interacting Membrane Selenoprotein (VIMP) Leads to G1 Cell Cycle Arrest and Cell Death in MIN6 Insulinoma Cells JOURNAL Cell Physiol Biochem 51 (5), 2185-2197 (2018) PUBMED 30537728 REMARK...
Synonym: 1500011E07Rik; H-4; H-47; H4; H47; Sels; Seps1; Vimp
NM_001348246.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus selenoprotein S (Selenos), transcript variant 1, mRNA. (1208 bp)
synonym="1500011E07Rik; H-4; H-47; H4; H47; Sels; Seps1; Vimp" /note="Selenoprotein S (SelS); Region: Selenoprotein_S; pfam06936" /db_xref="CDD:429198" misc_feature 147..209 /gene="Selenos" /gene_synonym="1500011E07Rik; H-4; H-47; H4; H47; Sels; Seps1; Vimp" /note="propagated from UniProtKB/Swiss-Prot (Q9BCZ4.3); transmembrane region" misc_feature 297..335 /gene="Selenos" /gene_synonym="1500011E07Rik; H-4; H-47; H4; H47; Sels; Seps1; Vimp" /note="propagated from UniProtKB/Swiss-Prot (Q9BCZ4.3); Region: VCP/p97-interacting motif (VIM). /evidence=ECO:0000250|UniProtKB:Q9BQE4" misc_feature...
Synonym: 1500011E07Rik; H-4; H-47; H4; H47; Sels; Seps1; Vimp
NM_024439.3 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus vimentin (Vim), mRNA. (1834 bp)
LOCUS NM_011701 1834 bp mRNA linear ROD 02-JAN-2024 DEFINITION Mus musculus vimentin (Vim), mRNA. ACCESSION NM_011701 VERSION NM_011701.4 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK133726.1. On Apr 23, 2009 this sequence version replaced NM...
NM_011701.4 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/mm/symbol%3aVIM
lang : en | div : | spe : mm | query_string : symbol:VIM | format : html | download : 

0.000 | 0.000 | search_start;
0.147 | 0.147 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(full_search:symbol,synonym:VIM)?source=Mus musculus (house mouse)?to=0&format=json
0.232 | 0.085 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(full_search:symbol,synonym:VIM)?source=Mus musculus (house mouse)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.232 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]