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2024-04-29 17:02:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_036165433            7440 bp    mRNA    linear   ROD 10-APR-2023
DEFINITION  PREDICTED: Mus musculus TBC1 domain family, member 19 (Tbc1d19),
            transcript variant X6, mRNA.
ACCESSION   XM_036165433
VERSION     XM_036165433.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/05/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7440
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..7440
                     /gene="Tbc1d19"
                     /gene_synonym="2810453K03Rik"
                     /note="TBC1 domain family, member 19; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     mRNAs, 13 ESTs, 527 long SRA reads, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 18 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:67249"
                     /db_xref="MGI:MGI:1914499"
     CDS             435..1625
                     /gene="Tbc1d19"
                     /gene_synonym="2810453K03Rik"
                     /codon_start=1
                     /product="TBC1 domain family member 19 isoform X3"
                     /protein_id="XP_036021326.1"
                     /db_xref="GeneID:67249"
                     /db_xref="MGI:MGI:1914499"
                     /translation="
MRKAQGSWEKRILKSLNSMCTELSIPLARKRPAMEQKELLNKWNEMGTDEPDLSLFRPVYAPKDFLEKECFVELGLNTGQLGIDDSTQVPPELFENEHVRIGQKVLAQQDSAAAQQYIRQGSPTALRAELWALILNISSQPEDILYYEQLKTNVIQHDLLVDSLIYKDVKLTASNDDYYFVFEDYLYQVLLCFSRDTSVLGHFAYNSASPPKSYIRGKLGLEEYAVFYPPNGVIPFHGFSMYVAPLCFLYHEPYKLYQIFREMYVRFFFRLHSISSHPSGIVSLCLLFETLLQTYLPQLFYHLREIGAQPLRISFKWMVRAFSGYLATDQLLLLWDRILGYNSLEILAVLAAAVFAFRAVNLMEVTSLAAAEAVLADLSTLKVMPLLQIFLFATVT"
     misc_feature    786..1442
                     /gene="Tbc1d19"
                     /gene_synonym="2810453K03Rik"
                     /note="Rab-GTPase-TBC domain; Region: RabGAP-TBC; cl02495"
                     /db_xref="CDD:445800"
ORIGIN      
gcattctttccttgccggcggccgtccccgcggctggcgggttagggcaggggaaatgttgcaggaggagtcggacctgtccctcatcattgcccagatcgtccagaaactcaagggctccaatttgtatgctcagctggaacggcaggcctggtcctgtcttcagagacccgagatcagactcgaatcactcaaagaagatattaaggaattctttaaaatatcaggttgggagaagaaacttcagaatgctgtttatagtgaactgaatgtggcgagttcatggccatcttggtggggaccaagacagcaggtggactggcacagtgttggagtaatagttgagaccttatacccgaagcataaggccaaggtttcctttgccaagtcatccttctgcaccccctgagcatctcaaagaacctttggtgtacatgaggaaagcacagggaagctgggaaaaaagaatcttgaagagtttaaatagtatgtgcacagaactgagtatcccactagcacgaaagagaccagctatggagcagaaagagcttctcaataagtggaatgagatgggaacggatgagccagatttaagcctttttcgacccgtttatgcacctaaggactttcttgagaaagaatgctttgtagaacttggcttaaacacaggacaactgggaatagatgattctacacaagtgcctcctgaactttttgaaaatgaacatgtgcgtattgggcagaaagttctagcgcagcaggacagcgctgctgctcagcagtacatccgacaaggaagtcccacagcactgagagctgagctctgggcgctcattctgaatatctccagtcagcctgaggatatcctgtattatgagcagcttaagaccaatgtgatccagcacgaccttttggtggacagtctcatttataaagatgtgaagctgacagcaagcaatgatgattactattttgtatttgaagattatttatatcaggtgttactttgcttttcacgggatacgtctgtactgggccactttgcatacaacagtgcttcaccgccgaagtcatacatcagaggaaaactaggattagaagaatatgctgttttctatccgcccaatggtgtcatccctttccatgggttttccatgtatgttgcaccattgtgttttctgtatcatgaaccttacaaattgtatcagatattccgtgagatgtacgtccgctttttcttcagactccactccatctcctctcatccttctggtattgtgtcactctgtttgctgtttgaaactcttcttcaaacgtatcttccccaactcttttatcatctgcgagaaattggagctcaaccacttcggatatcatttaaatggatggttcgagctttttctggatacttagctacagatcaactcttgcttttatgggatagaattctaggatacaactctctggaaatacttgctgtgctggcagctgccgtgtttgctttccgagcagtgaacctgatggaggtgacatcactggctgcagctgaagcagttctggctgacctttctactttaaaagtcatgcctcttcttcaaatttttctgtttgctaccgtcacctgatcttcgaggtcgctgacaacacctctagtttttcattagaaactaatcatgaactatgcaaacctgcatacatccagaattaaactttgcacataagccaataaagatcatgttccctcctccgttaaacctaagaagttttcactttttaaaacaataaccctacacaccaaatactgcgcttgcatgctgatgattgtcaagagagaagcaatagacatcagttctgctgaagcgagcatcctccatgcagatccctaactggtaacaggctcgtaccatatatgcaataagaactaacgacactgtaataaacttgaagaagtaacacagcttcttgtcagtttgtaaacttctccctagataataattttattttataaattgttccccactaaaactaattggttggatggggcttgaaaaggcttgaaaataatgtatttgagtggaatttaaatgtactttggtattttttatcaacttttaatttatgatggattttttcatatccctcccattttatttctccattaaacatctctactgggaaaaggtatacagatatctctaataatcttttgacttgtttttgttgttgctttttttgagacagtcttatatagtccagtcttatatagctactcactgtgtagtagaggatgactgagttccagatcccctcgtctccatctgccaagcgctgggattacaggtgtgtcccaccccacctaccccatctgatgctaggttattctttccattggaagtccctttgcacttccccgcctcccatcttttacacagaagccttgatactgctgatgctgatggtgatgcttggtgccagattctgttttccttggaagaatacaaggaggaggaatcaaacccagctctgttttgctgagcttggtgcttctagattgccttcagagcagaacagcttaaaaacaccacaagtgtttgttcatcctagaacgggagccactgttcaaggcactgggtcttattttaatgtttattataagcaaagcattttgatttgttttatatttcttgatgatatgccatttcagtacatggaataatgtaaaggaattgtcttctgattttagataaaaattgaagatgctgatcactctaaaaaaactcaaatcaatagattgacactctccttatctgaaatttattaggtcttatccaaatgtatcttagaaatctgttattttcacagcatatattaggaaaactatgatattcaacataatacttcaagtgtggtgaaatttggtgtcaatagcttaccgagaatctaagttctctcattcatcaggtacttgctgacttagtgaagtctaaacaatttactctgtgtttgagtcttaataagtccccatcttactgtttttggtgacacatcatgtcatgtgtcttgccatcctgcatgtccaggtgcccctccatggagaggacaagcatgattctggggctagtgtccccctttgtcacagtgtcaaaactattaggaagcagttgtgttttagataattagtagagcggtacccatgccaatctttaagctttttaaagaaaaatataattttactagagatattgtagttacctgatacactccatcagagagttctcctaaataattagatctgttttgggcagttaagcgggataccaaacagtaacaaattattgtttctgctgtgtttacctcacacaattatggaggaccacatgagtaaatatatatggaagtgattttcttaaaccttaaaagaccaatcaaatgtggtgttactaattcttatgtaacagattaactccaactgctagaaggtaacatgaaaaatgcccagcttgattggcatgtctgttgtatttcttgacagcttgaaatgatgtgtgttgagaaatgaatctttccaggatggtgctttcatttagtgcagtctactctagctggttgctctgaattttagtcccagaccaaagctggtaggcaaccttatactttgccactatggcaaccccgcattgctggtgttacctgctgggtaagcactaaagagagagccgtcaggccgctctgcccattccatccctaactgtgcttcttcaccctgcctcctgtgctttctctgatcaaccatcgacacccccttccttctgctctgccggtgaccacagaagtctggaaagcaagtgatgaccatgagcatatagtgaaacagcctcacaggcaggttatgtttcgttcttctgaactcagtccactaacacacaccatggctttaggtatggaagaacatgtctaacaatccctggaccagggtgttttgctactgcagtagcagtataactaaatgaatgactaaaatgcccagcttgatttaactgcctgtccagtgcttcttgctcagctggggctctctcctctcactccatagggagaagaaaaaccaataagctctcaccttttccacttggtagtctaaagcttagcttgatccccatatgtaatttcttccttcttgtctcaagaagtctttaatctatttctatcattctttaaatcctgactagtctgagttatttctgtctttacaaagtttcactacttgttgcttaaaggataaaaatctctgctcatcagcatagcagcaataattcctcatgcctggccttttgatttctttgtcccatgatgatcttcagccagttccagatggtcatctcctctctgtagaaggaacccacatgttcaaggtcctactcagaaaaggctcttcagttgccaagatgcactggatcctacacattatagttattcctgtgtctttgttcatccattaatgtggtgcttataatagtgggtattagtatggtcatcatcattgacttcctagctgtccaagtcgcaagaagagattgtctgcatgagtttgtatttcctgagttgttccaaactttttggaatacattttttcttaaacacaaatagtctcatccttccacaaaggctctgagctctactcatagtttgtctcttaaccccaagctctctgggttggtcaagcagtcacatgtgccatcctactagccatggaatgaatgactttgatatcaactcaaaaatctatgaccagtgaaagccaaagacacttggttaggagactctgatttaacctttcagggaaactgaatgtaagaaagaaagactatgacccagctccggtatctagtgaacggagagacagaaaagctgcccttggttcttgtgggtccccggaatgcaccccagtagccttctgctggacccttttgtatgtaggtcaaaggattgcctttgttctttgcaacagcaaggattctaacgtctgtaggtattttcctttgaggcttgagatctattgggtgtagaagctcagtccacaccctgttcaaaatggtgtaagacttctaaattccttgagtcaaggcagaactgtggccttacaagaataaagcctatcttcggtgcctacctaatatccctaactaggctctttgacctttggccctttgtcctataactccctcacttagaatgctttctcttctcttcttacctaactacaacttgtacctcagaacctacctcaggtgacgcatcatcaggaagaccgctcctcataccctaagtcagcccatgtcacaccactgtcctacttgtctttgttctctgctacatggtaactcctcaagggccaaaaatggtctcattttagctttgcacttctagagccaaacagtccttgccccattacaggcttgctaaatgtttataagtgaatggatggggccatctaactcagtagtcattttcctcttgatggcgacactgttcagagtgacatcttgtccagcatcatgtagccattttacctttagtttactaaagagaaagttttaaagggaataatatctttagaggagaaaattaatgctttattttttcatttaagtgaatacatatatagtaaaactgaacatatgtaaagtagaattctctttaagtgtacagtttggtataaatggatgtacccatgtcacctcttttaataattgaggtagcagaatgttcccctcacctaagacagtagatccctatatgcccttcctattcagtctcctgcacactcacagatggggactccaaaccgtcacagaactgtggctagccctaaagactagcctttcttctctagaggttcaactctatactcttgtgtctggcttgctctacttggcataatgtgctgggattcatactgtggcattggtagttcactgtcgattgtggctgaatacatatcttcatagaggcatgcatcttccttcccctgaggcaaatgccaagtataacggatactgtgagtcatatatccgtacttgtttaccttcctaagaagtcttcaggttcttgtgtgaagtgattccaccatttacactcccaccaacagtggaggagttgcagtggttcccagtcctggttgtcaatgtattaattaagttaataggtgggcatgttttattttttctgttatttccccagttagatagaacagcaccttattatgctttgttgctgtttatacataagttattattttatagtctactcttttgttcatttaaatcagttaccttcttattacattttaagacttatttattgtggatatagcatagaaatcccattatgcattataccttattttttattaactataccctttttctttttaatttttatttaaaaatttaccctcactcatatttacataaaatttattattccccccccccccccgcacaacactaattacctttttcaacagcaaaagcttttattttgttgaaaacaaatttggcatttttttttcttttaaagggtttttgtgtactatctataaaatccttgtgtaactcagttacacatactttccccatgttttcctctataaattttataaatttagttcattcatttagagctatgtttctttttctttagttcctttaatgtatgtgtgaggttaagggctaaggttcatgttttcactctggtgcccacctttgctaagcaggccacctttccatgctgcatcacgcctctataaagtcaggaggagggactcgctggcatctgacttgacttcatttcctgtggatttgtgtctgttctcactgcaatagtatagcatcttgatttttgtggatttagagcgagtcttgggattgacagtacaactgttcacttaggtcaaaattatttaagctatgtcagtattattgcttataacttttagaatcagcattttggttttttcacaaaatagtttgttaggatttttttttaatagacagtattagccctataataggcttagggacaattgatatcatagtattgagctatccaatccatgaacacagtatatctttttatttacttagctcttttaaattttcactcaataatatattttagttttgagtgggcagttcttgcattcattttgtttaaaatatccctagatatttcacatttctgttattgtaaattatatttttaactttaaatttccagtgtcttgttaatatagacaaatacaactaaaccttttatattgaccctgtatcctaaaatcttgaaaaacttaatacttctgttatcttttttggtagcttccctaggattttctacatatataatataccaactgcaaataaagattatattgcttctttcaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]