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2024-04-26 02:43:01, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_036152802             865 bp    mRNA    linear   ROD 10-APR-2023
DEFINITION  PREDICTED: Mus musculus heparan sulfate (glucosamine)
            3-O-sulfotransferase 2 (Hs3st2), transcript variant X8, mRNA.
ACCESSION   XM_036152802
VERSION     XM_036152802.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/05/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..865
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..865
                     /gene="Hs3st2"
                     /gene_synonym="6430516N12Rik; A830061E14Rik"
                     /note="heparan sulfate (glucosamine) 3-O-sulfotransferase
                     2; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:195646"
                     /db_xref="MGI:MGI:1333802"
     CDS             20..619
                     /gene="Hs3st2"
                     /gene_synonym="6430516N12Rik; A830061E14Rik"
                     /codon_start=1
                     /product="heparan sulfate glucosamine 3-O-sulfotransferase
                     2 isoform X7"
                     /protein_id="XP_036008695.1"
                     /db_xref="GeneID:195646"
                     /db_xref="MGI:MGI:1333802"
                     /translation="
MRVLGGSVTSHGISLSSTHPFCTVRPGPMRVRTLHDARFQAVCIGSARWLGMGFLCCCDGLGQSRLLGAPRCLRGPSASGQKLLAKSRPCDPPGPTPSEPSAPSAPAAAAPAPRLSGSNHSGSPKPGTKRLPQALIVGVKKGGTRAVLEFIRVHPDVRALGTEPHFFDRNYGRGLDWYSSAVARILCHHDAVITTKTAA"
     misc_feature    410..>562
                     /gene="Hs3st2"
                     /gene_synonym="6430516N12Rik; A830061E14Rik"
                     /note="Sulfotransferase family; Region: Sulfotransfer_3;
                     cl21551"
                     /db_xref="CDD:451306"
ORIGIN      
cgcctgggtgtgagtcagcatgcgggtgctagggggctcggtaactagtcacggaatctcactctcctccacccatccattttgcactgtgcgcccaggtcccatgcgtgtgcgcaccctgcacgatgccagattccaggctgtgtgtattggttcggcgagatggctggggatgggcttcctgtgctgctgcgacggtctgggccagagccgcctgctcggcgcaccgcgttgcctccgcggccccagcgcaagcggccagaaacttctggcgaagtcccgcccgtgtgatcccccggggccgacgcccagtgagcccagcgctcccagcgcgcccgccgctgccgctccagcaccgcgcctctccggatccaatcactctggctccccgaagccaggcaccaaacggctgccccaagccctcattgtgggcgtcaagaaagggggaactcgggcggtgctggagtttatccgcgtgcacccggacgtgcgggccttgggcactgagccccacttcttcgacaggaactacggacgaggactggactggtacagttccgctgttgcaagaatcctatgtcatcatgatgcagtcatcacaactaagacagcagcctaggcacaccgccctgattccgtactccatagctcttctctggcagtatcttcagttcttggatgtaaggtaagatatcacatgggatctagtagccatctctcaagtcaagcctgtgacactgtctccatcttccctctgttgtttttgttcttgcgctactgtggttgttgttgaggccttgaaagctttagagcacagaactggcaggaagtagactttctctccacctggacttatctggtgttt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]