2024-04-26 02:43:01, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_036152802 865 bp mRNA linear ROD 10-APR-2023 DEFINITION PREDICTED: Mus musculus heparan sulfate (glucosamine) 3-O-sulfotransferase 2 (Hs3st2), transcript variant X8, mRNA. ACCESSION XM_036152802 VERSION XM_036152802.1 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.7) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001635.27-RS_2023_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/05/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..865 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="7" gene 1..865 /gene="Hs3st2" /gene_synonym="6430516N12Rik; A830061E14Rik" /note="heparan sulfate (glucosamine) 3-O-sulfotransferase 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:195646" /db_xref="MGI:MGI:1333802" CDS 20..619 /gene="Hs3st2" /gene_synonym="6430516N12Rik; A830061E14Rik" /codon_start=1 /product="heparan sulfate glucosamine 3-O-sulfotransferase 2 isoform X7" /protein_id="XP_036008695.1" /db_xref="GeneID:195646" /db_xref="MGI:MGI:1333802" /translation="
MRVLGGSVTSHGISLSSTHPFCTVRPGPMRVRTLHDARFQAVCIGSARWLGMGFLCCCDGLGQSRLLGAPRCLRGPSASGQKLLAKSRPCDPPGPTPSEPSAPSAPAAAAPAPRLSGSNHSGSPKPGTKRLPQALIVGVKKGGTRAVLEFIRVHPDVRALGTEPHFFDRNYGRGLDWYSSAVARILCHHDAVITTKTAA"
misc_feature 410..>562 /gene="Hs3st2" /gene_synonym="6430516N12Rik; A830061E14Rik" /note="Sulfotransferase family; Region: Sulfotransfer_3; cl21551" /db_xref="CDD:451306" ORIGIN
cgcctgggtgtgagtcagcatgcgggtgctagggggctcggtaactagtcacggaatctcactctcctccacccatccattttgcactgtgcgcccaggtcccatgcgtgtgcgcaccctgcacgatgccagattccaggctgtgtgtattggttcggcgagatggctggggatgggcttcctgtgctgctgcgacggtctgggccagagccgcctgctcggcgcaccgcgttgcctccgcggccccagcgcaagcggccagaaacttctggcgaagtcccgcccgtgtgatcccccggggccgacgcccagtgagcccagcgctcccagcgcgcccgccgctgccgctccagcaccgcgcctctccggatccaatcactctggctccccgaagccaggcaccaaacggctgccccaagccctcattgtgggcgtcaagaaagggggaactcgggcggtgctggagtttatccgcgtgcacccggacgtgcgggccttgggcactgagccccacttcttcgacaggaactacggacgaggactggactggtacagttccgctgttgcaagaatcctatgtcatcatgatgcagtcatcacaactaagacagcagcctaggcacaccgccctgattccgtactccatagctcttctctggcagtatcttcagttcttggatgtaaggtaagatatcacatgggatctagtagccatctctcaagtcaagcctgtgacactgtctccatcttccctctgttgtttttgttcttgcgctactgtggttgttgttgaggccttgaaagctttagagcacagaactggcaggaagtagactttctctccacctggacttatctggtgttt
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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