GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-30 00:17:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_030250137            2455 bp    mRNA    linear   ROD 10-APR-2023
DEFINITION  PREDICTED: Mus musculus lipase maturation factor 1 (Lmf1),
            transcript variant X2, mRNA.
ACCESSION   XM_030250137
VERSION     XM_030250137.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000083.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030250137.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/05/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2455
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="17"
     gene            1..2455
                     /gene="Lmf1"
                     /gene_synonym="2400010G15Rik; cld; Tmem112"
                     /note="lipase maturation factor 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 24 ESTs, 729 long SRA reads, 1 Protein, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 35 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:76483"
                     /db_xref="MGI:MGI:1923733"
     CDS             659..1732
                     /gene="Lmf1"
                     /gene_synonym="2400010G15Rik; cld; Tmem112"
                     /codon_start=1
                     /product="lipase maturation factor 1 isoform X2"
                     /protein_id="XP_030105997.1"
                     /db_xref="GeneID:76483"
                     /db_xref="MGI:MGI:1923733"
                     /translation="
MLGAGLIKVRGDKCWLDLTCMDFHYETQPVPNPIAYYLHRSPWWFHRFETLSNHFVELLVPFFLFLGRRMRILHGVLQILFQVILIISGNLSFLNWLTIVPSLACFDDAALGFLFPSGPQGLKKQVLEIQREDTQRVQPKPRDRGCLVRQVVNISLGILVAWLSVPVVINLLSSRQIMNTSFNPLRIVNTYGAFGSVTKERTEVILQGTVSPNASAPDAVWEDYEFKCKPGDPWRQPCLISPYHYRLDWLMWFAAFQTYEQNEWILHLAGKLLAGDSEALALLAVNPFEGRTPPRWIRGEHYRYKFSLPGGQHATQGKWWIRKRIGPYFPPLRLEDLKEYFKTREWPLPEPPSRHTR"
     misc_feature    659..1648
                     /gene="Lmf1"
                     /gene_synonym="2400010G15Rik; cld; Tmem112"
                     /note="Lipase maturation factor; Region: LMF1; pfam06762"
                     /db_xref="CDD:429107"
ORIGIN      
gcaccgccctttgtgctcatgcgcccagacagcctagtaatggctgcgcccgaggggtcgctgagaaaacggaaggtcgggggtgcggagcacagtccagcgtcgcaaccttctctggctagagatcccgcagattctccagctcggctgcacacgggcaccttctggctgactagaatcgtgctcctgcgggccctcgctttcatttactttgtggcctttttggtggcattcaatcagaacaaggccctcatcggtgaccggggcctgctgccctgcaaactgtacctgaagaatgtccaggagtacttccagggcagcactggctgggctgcctggacctatgcaccaaccattatgtggttgttggactggtcagacatgaacttcaacctggacctcattgctcttcttgggctgggcatctcgtcctttgtcctggtgaccggctgtgccaacatgatactcatgactgccctctgggccctctacatgtccctggtcaacgtagggcagatctggatgggagtcacagctgctggaaacaggattcctggggatctttctgagccctctctggacactgtcccgcctgcccaagaacacccccacatcccagattgtcctgtggggcttccgctggctgatcttcagaatcatgcttggagcgggcctcatcaaggtccgcggggacaagtgctggctggatctgacctgcatggacttccactatgagactcagcccgtgcccaacccgatagcctactacctgcacaggtcaccatggtggttccaccgctttgagaccctcagcaaccacttcgtggagcttcttgtgcctttcttcctgttccttggacggcggatgcgcattcttcatggagtgctgcagatccttttccaggtgatcctcatcatcagtgggaacctgagcttcctgaactggctcaccatcgtgcccagccttgcctgcttcgacgatgcagctctgggattcctgtttccctcaggacctcaaggcctaaagaagcaagtcctggagattcagagggaagatacacaaagggtccagcccaagccaagagacagaggctgcttggtgcggcaagtggtcaacatctccctgggcatcctggtggcctggctcagcgtacccgtggttatcaatctgctaagctccaggcagatcatgaacacctccttcaacccgctcaggatcgtcaacacctatggggcctttggaagtgtcaccaaagagcggactgaggtgatcctgcagggcacagtgagccccaacgccagcgcacctgatgcagtgtgggaagactatgagttcaagtgcaaaccgggcgacccctggaggcagccatgcctcatctcgccataccactaccgcctggactggctgatgtggttcgcagctttccagacctatgagcagaacgagtggatccttcatctggcgggtaagctcctagctggtgactctgaagccctggccctacttgctgttaacccctttgagggcaggactccccccaggtggatccgaggagaacactaccggtacaagttcagcctccccgggggccagcacgccacccagggcaagtggtggatccgcaagcgaattggtccttacttccccccactccgccttgaggatctgaaggaatactttaagactcgggagtggccactaccagaacccccatctagacacacacgctgaaataaagaccagagaccaaccgcttctctacctatactgtgctgcggccacgggacccgcacagggacccggcagcccatggatcctgccaagaagagattggaaaaggatgtgcttcctagctgtcagcctcctgtctctatccgtccctgtcaccttgctaacccttccctgttgtggagaggggggtctcagattccctaacctagaggctgcgtcccctgtagcccaaccacacattcctagtcaatcccgtagccaggtctctatcacaagtccggtgtggcagcaccgactcgttcccaccatctccctgagggacaggaggcttgctgttctcagcatgatccctccccagaacccctcacacaccacccaggcacacacacacagatacatgagctcaggaatcccttgcacgctccagtgtaggatatatgcaaatggatagaagccctgtcaccagcttgtggtcatattccagtctcccgtgggtgacctgtggagaaccaagcagagccatgtcagtgggaaccttggccagcagtgcttaaggcttcccttcccagattgcgcacaactgcccaggctcaccagctacaaggacagcagagactctaggaatacctccccatccccctgcttgctaagcatggtgtctggggcccatgttgcctgtccctgggccacactgcagaggatcccagaaaggacaacaaaaaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]