LOCUS       XM_030244115            9143 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus natural killer tumor recognition sequence
            (Nktr), transcript variant X11, mRNA.
ACCESSION   XM_030244115
VERSION     XM_030244115.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000075.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030244115.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9143
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="9"
     gene            1..9143
                     /gene="Nktr"
                     /gene_synonym="5330401F18Rik; D9Wsu172e"
                     /note="natural killer tumor recognition sequence; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 45 ESTs, 1141 long SRA reads, 1 Protein, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments, including 44 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:18087"
                     /db_xref="MGI:MGI:97346"
     CDS             2604..6638
                     /gene="Nktr"
                     /gene_synonym="5330401F18Rik; D9Wsu172e"
                     /codon_start=1
                     /product="NK-tumor recognition protein isoform X5"
                     /protein_id="XP_030099975.1"
                     /db_xref="GeneID:18087"
                     /db_xref="MGI:MGI:97346"
                     /translation="

MANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLATKLTKDVFEKKRKKPTCSEGSDSSSRSSSSSESSSESEVERETIRRRRHKRRPKVRHAKKRRKEMSSSEEPRRKRTVSPEGYSERSDVNEKRSVDSNTKREKPVVRPEEIPPVPENRFLLRRDMPAITVEPEQNIPDVAPVVSDQKPSVSKSGRKIKGRGTIRYHTPPRSRSHSESKDDDSSETPPHWKEEMQRLRAYRPPSGEKWSKGDKLSDPCSSRWDERSLSQRSRSWSYNGYYSDLSTARHSDGHHKKHRKEKKFKHKKKAKKQKHCRRHRQTKKRRIVMPDLEPSRSPTHRMKSSCVRERRSRASSSSSHHSSKRDWSKSDQDDGSASTHSSRDSYRSKSHSRSDSRGSSRSRAVSKSSSRSLNRSKSRSSSRSGPRRTSISPKKPAQLSENKPVKTEPLRPSVPQNGNVLVQPVAAENIPVIPLSDSPPPSRWKPGQKPWKPSYERIQEMKAKTTHLLPVQSTYSLTNIKATVSSSSYHKREKPSESDGSAYSKYSDRSSGSSGRSGSKSSRSRSSSRSYTRSRSRSLPTSRSLSRSPSSRSHSPNKYSDGSQHSRSSSYTSVSSDDGRRAMFRSNRKKSVTSHKRHRSNSEKTLHSKYVRGREKSSRHRKYSESRSSLDYSSDSDQSHVQVYSAPEKEKQGKVEALNDKQGKGREEGKPKPEWECPRSKKRTPKDHSRDDSVSKGKNCAGSKWDSESNSEQDVTKSRKSDPRRGSEKEEGEASSDSESEVGQSHIKAKPPAKPPTSTFLPGSDGAWKSRRPQSSASESESSCSNLGNIRGEPQKQKHSKDDLKGDHTKRAREKSKAKKDKKHKAPKRKQAFHWQPPLEFGDDEEEEMNGKQVTQDPKEKRHVSEKCEAVKDGIPNVEKTCDEGSSPSKPKKGTLEQDPLAEGGHDPSSCPAPLKVEDNTASSPPSAQHLEEHGPGGGEDVLQTDDNMEICTPDRTSPAKGEVVSPLANHRLDSPEVNIIPEQDECMAHPRAGGEQESSMSESKTLGESGVKQDSSTSVTSPVETSGKKEGAEKSQMNLTDKWKPLQGVGNLSVSTATTSSALDVKALSTVPEVKPQGLRIEIKSKNKVRPGSLFDEVRKTARLNRRPRNQESSSDDQTPSRDGDSQSRSPHRSRSKSETKSRHRTRSVSYSHSRSRSRSSTSSYRSRSYSRSRSRDWYSRGRTRSRSSSYGSFHSHRTSSRSRSRSSSYDLHSRSSRSYTYDSYYSRSRSRSRSQRSDSYHRGRSYNRRSRSGRSYGSDSESDRSYSHHRSPSESSRYS"

     misc_feature    <2604..2789
                     /gene="Nktr"
                     /gene_synonym="5330401F18Rik; D9Wsu172e"
                     /note="cyclophilin-type peptidylprolyl cis- trans
                     isomerases. This family contains eukaryotic, bacterial and
                     archeal proteins which exhibit a peptidylprolyl cis- trans
                     isomerases activity (PPIase, Rotamase) and in addition
                     bind the immunosuppressive drug...; Region: cyclophilin;
                     cl00197"
                     /db_xref="CDD:469651"
ORIGIN      

cggggaagaggtggcgttccgttggtgacgttaggctccggcggcgccggcagggcgttctccggagctgtgcggccagctcgccgccgtcccgctgctgcgctcgcgatgggcgcccaggaccggccgcagtgtcacttcgacatcgagatcaaccgggaaccggttggtcgaattatgtttcagctcttctcagacatatgtccaaaaacatgcaaaaacttcctatgcctgtgctcaggtgagtgagtttttaacttgttttcaataagaatgactggctacttacagatgtatctgttttaaggcaggagaatgagaaccttcataaatatataatgaatgccagcaagattttgctgacaggaccctgatataactgtctcttgtgaggctatgccagtgcctggcaaataacagaagtggatgctcacagtcatttatttattggatggaacacagggcccccaatggaggagctagagaaagcacccaaggagctgaaggggtctgcaactctataggaggaacaacaatatgaactaaccagtaccccggagctcttgactctagctgcatatgtagcagaatattaggccatcttcgggaagagaggcccttggtcttgcgaagattatatgccccagtacaggggaatgccagggccaggaggcaggagtttgtgggttggggagcaaggtggagggagggtgtaggggactttcgagatagcatttgaaatgtaaatgaagaaaatatctaataaaaagaaaacattaaaagaatacatacaatgatctgttaagtgagttatatagctaaaacttgaatatgatatgaaatatgaatgaaggaaacatttcttaaaagaggacagtatgaaaaagaaataatctttaaaatgataaggatctattttatataataaaatctttatgtattaattcgtcaaataagacatttcaaaattaatttggcccgggaaaatgttgttatccaaattttaattctttaaatacatttagcactttttaaaaattgcttttcattatgtatcattgcttactcccttgccaagaagaataaaacgggtttaatgctaaacatttaaaatagcaagtttaatttttaaaaacctatgtttgaaccaattttcttgttttcattctttagtgaaataattctcttcattcttacctccagtagcacatagaattgtttctggatcaatttaaaacatacactgctttgcataatttattttggtgtgtgtattatgtatatatgctacatacattgtgtcatctgtctgtgtcttacatctctcatagtatcagcacatgggagggatttcaccgcaaattagttggttggttattcccggggagtgctgggtttgtagctaaacttcttttttttttcccccaggggagaaaggccttgggaaaacaactgggaagaagttatgttataaaggttctacattccaccgtgtggttaaaaactttatgattcagggtggggacttcagtgaaggtagagataaaagttatattcctaataaatccatccatcagaatctcaatattgctttaattgtaaatatcatgtcacagaataatgagaacatgtatccacagtgcatccttgttggatgaacaaatgttgcagatctagaatttgtgaaaaagtaaagactgtaatattttattttatgtaatttagtaacataattatcagagagattaccttacagtgtacaccacagtactgtccaattacatctattctagaaatttcttggtgtgactatctgttacttgaaacagttttgtcataggggtcatttttctgatagtatttttcatgatatgttaaagattaagtgaatgttcctagagtcacagagctttttgggtttttgttttatttgtagcaattaaaaggtttcagagttccttcaacatattgaagccatcaaaaataatttattgggctgaaaatgaagctgaatggtggaacatttgcttggtgtgtcctaggccttggtttcactttcaagtactgcaataacagtaatgatagtaatagaggtgggtgtgatggcacacagctgtgatcccaacacttgggaggcagaggccagggattttgagtttaaggattttgaggtcatcctgacctacaatggtaagactgtgtcttaaatccaaagcacgtgagccagcaaggtactcatactcagtaggtaaaggcacttgtgaccaagcctcataacctgagttcagtccctgggactcacatggtggaaggcgagaaccagctcctgcagatggtcctctgagctccacattcattcacactgttgcacacacgcaccctcacacgtgtgcatgcatgtgcacacacacacaaaatcatgttaaaaatagaattactaccatgcattgaatatttaaaaatttattataactcattgttttcaggtaatggaaaaggtggagaatcaatttatggtggatactttaaagagaatgtggtcttttgcaaaatgaaaagatgaaaactttattctcaaacatgacagagcgttccttttgtcaatggcaaatcgagggaaacataccaatggttcccagtttttcataactacaaagcctgctccacacctggatggggttcatgttgtttttggactggtaatatctggttttgaagtaattgaacagattgaaaatctgaaaacagatgctgcaagcagaccttatgcagatgtccgagttattgactgtggggtgctggccacaaagttgacaaaagatgtttttgagaaaaaaaggaagaaaccaacctgttcagaaggctcggactcttcttcccgttcctcttcctcttcagagtcctcctcagagagtgaagttgagcgagagacaatcagaaggagaagacataagaggaggccaaaagtcagacatgctaaaaagagacggaaagaaatgagcagttcagaagaaccgaggaggaagcgcacagtaagccctgaaggttattctgagaggagtgatgtgaatgaaaaaagatcagttgactcaaacactaaaagagaaaagcctgttgtccgcccagaagagattcctccagttcccgagaaccgatttttacttagaagagatatgcctgctatcactgtggagcctgaacagaacattccagatgttgcacctgttgtaagtgatcagaaaccctctgtatcaaagtctggacggaaaatcaaaggaagaggcacgattcgctatcacacacctccaaggtcaagatcccactctgagtccaaagatgatgacagcagtgaaacccctcctcactggaaggaggagatgcagagactgagagcctacaggcccccgagcggagagaagtggagcaaaggagacaagctgagtgacccctgttcaagccgatgggatgaaagaagcctgtcccagagatccagatcatggtcctataatggatactattcagatcttagtacagcgagacactctgatggtcaccataagaaacacagaaaggaaaagaagtttaagcataaaaaaaaagctaaaaagcagaaacattgcagaagacacagacagacaaaaaagaggagaatagttatgcctgatttggaaccctcaagatctcccacccaccgaatgaagtcctcttgtgttagagaaaggagatctcgtgcctcctcctcctcctctcatcactcatccaagcgcgactggtctaaatcagaccaggatgacgggagtgcttcaacccattccagcagagactcctacagatccaagtctcattcacgatcagattctagagggagctctagatcaagggctgtgtcaaagtcctcatctcgttctctcaacagatcaaaatctagatctagttccaggtcaggaccccgaagaacatcaatatcccccaaaaaacctgctcagctgagtgaaaataagccagttaagacagaacctttaaggccgtcagtgccacagaatggaaatgtgctagtgcaaccagtggcagcagaaaacattcctgtaataccattgagtgacagccctcccccttctaggtggaagcctgggcagaagccctggaagccctcttacgagcgaattcaggagatgaaagctaaaacaacccacttgctgcctgtccaaagcacatacagcttaacaaatattaaagcaaccgtgagttcatcatcttatcacaaaagagaaaaaccttcagaaagtgatgggagtgcttattcaaagtacagtgatagaagttctggaagctcaggaaggtcggggagcaagtcttctaggagcaggtcatcctccaggtcctacacaaggtcaaggtcaagaagtctccctacttcacgctcactctctaggtctccatcatctaggtctcactcaccaaataagtacagtgatggttcccagcacagtaggtcatcttcatatacttctgttagcagtgatgatggaagacgagccatgtttagatccaacaggaaaaaaagtgtcacttcacataaaagacatcgcagcaactctgaaaagacacttcacagtaaatatgtcagaggcagagagaaatcctcacgtcacagaaagtatagtgaaagtagatcatctttagattactcttcagacagtgaccagtcacatgttcaagtatactcagccccagagaaggagaagcagggaaaagtggaagcattgaatgataagcaggggaaaggcagagaagaaggaaaacccaagcctgaatgggaatgtcctcgttctaaaaagagaactccgaaagatcactctagagatgacagtgtgtccaaagggaagaattgtgcggggagtaaatgggattcggaatcaaactcagaacaagatgtgactaagagcaggaaaagtgatccccggagaggttcagaaaaggaggagggtgaagcctcttcagactccgagtcagaagttggtcagagtcacatcaaagccaaacccccagcaaagcctccaacaagcacttttctgcccggcagcgacggtgcctggaagtctaggagaccacagtcttcagcctctgagtcagagagctcctgctccaacttggggaacattagaggagagccccagaagcaaaaacactcaaaggatgatcttaagggggatcacacaaaaagggcaagagagaagtcaaaagctaaaaaagacaaaaaacacaaggctccaaaacggaagcaagctttccactggcaacctccactcgagtttggtgacgatgaggaggaggagatgaatgggaagcaagttacacaggacccaaaagagaaaaggcatgtctctgagaagtgtgaagctgtgaaagacggcattccaaacgtcgagaaaacctgtgatgaaggcagttctccaagtaaacccaagaagggtactttagagcaggacccacttgcagagggtggacatgatcccagctcttgtcctgcacctctgaaagtggaggacaacacggccagctctccacctagcgcccagcaccttgaagagcatggcccaggtggaggggaggacgtgcttcagacagatgacaacatggagatttgcacgcctgataggacttcccctgcaaagggagaggtggtgtcccctttagcaaaccacaggctagacagcccagaggtgaacattattccagagcaggatgagtgtatggcacatcctagagcaggaggagaacaagagagtagcatgtctgaaagcaagaccttgggtgaaagtggggttaaacaggacagctctaccagtgtgaccagtcctgtagaaacttctggaaagaaggagggggctgagaagagccaaatgaacctcacagataagtggaagccattgcaaggtgtagggaatctgtcagtgtctactgcaaccacatccagtgctctggatgtgaaggcattatctactgtgcctgaagtgaaaccacaaggcttgaggatagaaatcaaaagcaaaaataaggttcggcctgggtctctctttgatgaagtaagaaagacggcacgcctaaatcgaaggccacggaatcaagagagttccagtgatgatcagacacctagtcgggatggtgatagccagtccaggagtccacacagatctcgaagcaaatccgaaaccaaatctcgacacagaacaaggtctgtctcatacagtcactcacgaagtcgatctagaagctctacgtcatcttaccgatcaagaagctactctagaagccggagcagggactggtatagcagaggccgaacccgcagccggagcagttcctatggaagtttccatagtcacaggacgtccagcaggagccggtccaggagcagctcttatgacctccatagccgctccagcagatcctacacctacgatagctactacagccggagtcgtagccgcagccgcagccagaggagtgacagttaccatcggggtagaagttacaacaggcggtccaggagtggtagatcctatggctcagacagtgaaagtgacagaagttactctcatcaccggagtcccagcgagagcagcagatacagctgagatgtctctgtacagattgtgtcttaagtgtaaatacctggtaacttaaagcttaagaaactggatggcagtctgttgtgttttagtattagacctcaatcctatagtggatatttcttgtcacttatttacatgtgcgcaaaagaatttaaagtgcagatgtccctagaaatatttctatgacccattttacagtaggcaactatggaattttcattttcttgaatcaagaaatggtaaatttgatgtaagtataatttgcagtgtcactgtagatagggttttctgtagatcacattgtctgtagaattcaggtttctttttgtttcaggttttagcatccatgctgccaaacacaattatggagagctgtcacaagacacgtgttctccatgtccccatgtccccatgctggttgtcgtcttggtgtgtgctgtcagatgaggctgtccacatccatattgaccatggccaggtgtgcagggtggtagctcattcctctgtgtcccagctgtgagcacccacacttcacagggaatgccagcccagccaccccagctcctgctttggtgcttggtgcctttggttcctcgtataccctatgtcatattgtcacatactgcatttcctgatgccagaaaatgaattgtgattttttttttttaaattcactggcaccaaaaataatttcttctgagctgggttcactgtgagtgtaggggcttcttccaaacacagatatgtggtggaggtcccttggaacagaacctgtatggctggtcatcttgttctgcacatgtgtgctaaagtgccagctgaagaatgtccttcagaagcagctccacagacactccagccaagcttcactctcactgtggcaatagtagcagccctgccccaaccatcctattccctgtttgtgtcgagacaccccccacccccacccccacgctgccccctgactccatgaagccctgcctgatggaggaaacccaggacaaaagttgggggcagcagggtcacaggctctgctgcacagaaaggggttcttacggctttgtgtggctcctccaggaagaatctaacctgtaaaaactagtgtgggtttgtttctttgttttgttttactctttagtttgcattctttccccaagtgtacttaatcaccttagtgccggttaaatccagttcacagacttcctgtcaggtatatggtgtagaagtctgtactctcctatcccacccaggccttgctagtgcatttgggaagagtaaaggccttgggctggaggaaattactaaagccctggccagatggaggggaagtactggatatatgaaagtagtcttccagggccatgtggctcagtgatatatagcatgtgcttagcatgtaagtagctctgggatcagaggtcagcaccccacaaataaataatggtgttactctgtgatgtatgtaagcagcattttggtggccagccagctattgttcaccatgtctgtaaattagttaattagaaggataacatcggaactcagtgcttggcgggttagacatgtggtttatagtgagtgggtccttctaccccccccccctttaaagttgcctacaaagaagggtgtttgaatctagtattcagtaggaagaatgcattcagagcccaaataaactggcaaatgtaattagtaagaaaaggtcactattgggccatatattcttatttggttgctgtgtaacaagttatcccaaatttctcagcctaagagtgcctatgtgtcattgacaaacaggcaatggtagggttgactcatctgctcagggtctcaaggtaaggtctggaagagctcatttctcagaagactctgggaagacgtgacttgtagctgggcccctctagagccctcggtggatgcccacatcgcctgctgtaggccttgccagcttcaaccagcagggaccctttgagtcttgtctttttttcaaaacctctgccctcctcctgctttaagggtccatgtaagtagatcagactccagagataaatctctactcgaagtcccgtggccagaggaattacagacattgtcgggttctggggattagcatagcaagaggaagggcatccacctaccacctactgctgcatggacagggcttaacctgtaccagcaggcactcatgttcagtaatgtcaaccttgctgtttatactcgactgaatacagaaatggcttttcttcttatccacgatcattctgtattttgaagttatttttttaataaaattgaattatgttgtgtaatgtgcttaatagaaaatgctttctttattggatgattttgtaacatcctgtttactgcaagtggcatagttgatattgttcaaaaatgtagaaaatacttttgtacatactagcaatgtctaatttgtatatacttctatgaaatttctctacaacttgaaaaggatcttgtagaaatgaaaatacatgctgagtttga

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