2024-11-01 08:00:55, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_017320100 14553 bp mRNA linear ROD 07-FEB-2024 DEFINITION PREDICTED: Mus musculus argonaute RISC catalytic subunit 3 (Ago3), transcript variant X10, mRNA. ACCESSION XM_017320100 VERSION XM_017320100.2 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 21, 2020 this sequence version replaced XM_017320100.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001635.27-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/01/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..14553 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="4" gene 1..14553 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="argonaute RISC catalytic subunit 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 11 ESTs, 632 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:214150" /db_xref="MGI:MGI:2446634" CDS 54..1811 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /codon_start=1 /product="protein argonaute-3 isoform X4" /protein_id="XP_017175589.1" /db_xref="GeneID:214150" /db_xref="MGI:MGI:2446634" /translation="
MRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNFFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature <54..326 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:460472" misc_feature 405..1682 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(816..818,828..830,864..875,882..884,906..908, 915..917,927..929,939..941) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1020..1022,1026..1028,1236..1238,1650..1652) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="active site" /db_xref="CDD:240015" ORIGIN
cagtcccccaaaccaattagagtctgaaagttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacgagaaggcctgccagccaccaaacctttcctttacagctagaaaatggccaaactgtggagaggactgtggctcagtatttcagagaaaagtacacgctgcagctgaagtacccacaccttccctgcctgcaagtggggcaggagcagaagcatacatacctgccactagaagtctgtaatattgtggctgggcaaaggtgtatcaagaaactaacggacaatcagacttctacaatgataaaggcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcagtttaaagtgcgggatgaaatggcccatgtgacaggacgtgtacttccagcacctatgctccagtacggaggacggaaccggacagtagccacacccagccacggagtatgggacatgcgaggaaaacagttccacacaggagtcgaaatcaaaatgtgggctattgcttgctttgccacacagaggcagtgcagagaagaaatactaaaaggtttcacagaccagcttcggaagatttccaaggatgcagggatgcccatccagggtcagccatgcttctgcaaatacgcacagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcaggactgcagctcattatcgtcatcctgcccgggaagacaccagtgtatgcggaagtgaaacgtgtgggagatacacttttgggtatggccacacagtgtgtacaagtcaagaatgtaataaaaacatctcctcaaactctttcaaacttgtgcctaaagatcaatgttaaacttggaggaatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatcttcctgggcgcagatgtcacacacccgcctgctggtgacggaaaaaagccctccattgctgctgttgtaggtagtatggatgcccatccaagcagatactgtgccacagtaagagttcagagaccccgacaggaaatcatccaggacttggcctccatggtccgggaactgctcatccaattttataaatcaacccgattcaaacctactcgtataatcttctatcgggatggtgtttcagaaggacagttcagacaggtattatattatgagctactggcaattcgagaagcctgtatcagtttggaaaaagactatcaacctggaataacctacattgttgttcagaagagacatcatacacggttgttctgtgctgataggacagaaagggttggaagaagcggcaacatcccagctggaaccacggtggataccgacattactcacccatatgaattcgacttttatctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgacaacttctttactgcagatgaacttcagctgctcacttaccagctctgtcacacttacgtacgctgtacaagatctgtttctatccctgcaccagcatattacgctcacctggtggcattcagagccagatatcatcttgtggacaaggaacatgacagtgctgaaggaagccatgtttcaggacagagcaatgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtacttcgcttaacaagtccaagtttattctccgtgacaaagagatgaaaagtgaatcaacatacaatgtatgtttccaatggagtcaatttgctggggaggcctccagccatacagaagccagtactatgtagaggtcaggtccttatgttgatccaaggaaaatcgtttacactgtcaaagaacgcagcaccattgtacactagggagccagccgctgcttttttgcagtctcctgtagaagatgcatcaccattgtttattctcacttcttacagtctaacccttttaatgcctttacctcaagttgcttagcagcacaactatctctgcaaaaaagtaaagaaaaattgaatggtggtttaaaaacacacaattacacaaataatgattgttcagttatatgtgcagaaaaagtaatgtgcatctattcttgtaaaggagtctgtattttcaataccctcacattacttcatgtgcatatgtatctagatctaggttactgatgtatatgtgtctgtgtgtatatcttatagttcatttccctggagaactctttccttgtatccctccttaggccgcactcgtttcctttactgtctcccttgccttcagcatctatactttggtccctatagctacaagtgacattcctatgttcacacatatggttcacttgaaggaaggtttgacaaattagacttctggttttctttatgtccctattcctagctcctttcactcacacaggagtcctcagctcctgacgccatgtttgtgagcgtctgctcccttttgctctggatttaccacatgtgcactgtgtttggaaacagtggcaacctggggattcttttttgtagtgagtttgttaaagctgctctaaatacgaaaccttgtcggacatctttctgatcagtgcaaatgttctaaagcctctgtttgtatgagttatacctggaaatccctccaaaactcgataggatggaaaaaggaaggaattagggttggtttggtttgttttttgctagtttactcactgcccttataccttaatgtgattttctcacatataaatatatacatacacacacacacattgaagtatagctccctttgcctttatgttcattagaatagtgctttaataattataaactatataggctatatcttttctagaactagaatcgtgtttaagaatggagacagttttttgctctcttttagtgcaataagcagttttacaggaaagttctgtctgtcatcctcaccgtggatagcaggaagaacagacatccgtagtttaaagggaacaaagtaatacagccttaatttcagaaggagagcttcataattttcagttttaaagcaattccttaaaataattttagccaaaggagtaaaaccgatcaaaggcgcctcagctgtgaggtcagaagcatagttgaacttaagtttttaaaaatgacagtgaacagcttaagatttaaatattctttcttacttattgaagaattgtgcttctttgactaacaggaattgagaaaatacaggatgatttttttctatctttttaccagtataactttctctttaaaaataagatggcaatgatgaaggaaattaggactttggtcatttaaaattagtaaaatttccgaaatacagtgaaaactttgcaaaaacttagttttctccacttctttaatcaataaccttaataacgttggagctgtcaaagctgagtgtctcagtaatggcaggttcagggaactttgcactttgtaagtcatgaacattgcatgtgagttttctctgttgtccccaccctggctctgaggacagacactacagatgtttgtggaatgcactgtcggcctttcagaagccccaccccgccatgaacaggaatgcagttatgtcttcatttgctctctttagtccacattgtagccaatttactacatttcaatataaaatctgagccatgtcctacaggcatgaattcttctgtccctttgccagaacataaagaaagtactgtattttatatttttattgcttgaagtatctaaaattcgattctcaatactgttttaaagctgtttactgtttacaaaggattttcatgtggtttatacatttttctccttccaaaatattcccatctcaaccctggcaaaagaaaactccttacaacatatttggggtgggttggtttgcttgcttgttttggagacaacgtctctctctattgcccatgctggcctccaacccctgggctccagcagtcttcttaacctctctggtagttggaaccattgggctccttccatcatgcctggctgtcggggagcatggccaaaagaatagagtggtgcaggctccatggtaaaagtctttgcctgggttgtgtttgctcagtagaagtaaacatgtttttcagcccctgcacattcacatgaggagctttagggagtcgcatgggccctgtccctttcctgacctttggtctcacacatgccagagtgaagcccttacttttaattcttatttaaaaggattttttaaggggaagaattttttttctaaaatataaggttttatcttttaaatggcttcttttttagaatgcatttatattattcagtcttgctagtttaagataattaacttaggatatgtatagtgtatttctgttttgcctactaataaattgttataccaaacttaatgccaacaaactttatgcttagaattttaagattaaaaggcctatagaaaatacttcttgaaatttatactatttttccatttctggttagaattcctaatctttttcttaagttcctttcagtttaaacatcatgaagccatagtaacatttctcctctaccgtactcttgctcctagctgatgaatgtcagcttgtggggtttttttgttttttatggtatggcttataaaactgactaaaatgtcaatctgaacaacttatagaatcgattctcttgttaagaagagttgagagtttaatgtatattcttgatggcaaatgtgtctgtagagtgtgcatgttacatgtctatattacagtatctaagcactggcattgataccatatattaataattctgtagctgctatatttattgaggcagagtctgacatttactgcactaaacaatgagacaagcaa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//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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