2024-04-25 17:32:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_017314295 2456 bp mRNA linear ROD 10-APR-2023 DEFINITION PREDICTED: Mus musculus homeobox B8 (Hoxb8), transcript variant X1, mRNA. ACCESSION XM_017314295 VERSION XM_017314295.2 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000077.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_017314295.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001635.27-RS_2023_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/05/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2456 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="11" gene 1..2456 /gene="Hoxb8" /gene_synonym="Hox-2.4" /note="homeobox B8; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:15416" /db_xref="MGI:MGI:96189" CDS 876..1607 /gene="Hoxb8" /gene_synonym="Hox-2.4" /codon_start=1 /product="homeobox protein Hox-B8 isoform X1" /protein_id="XP_017169784.1" /db_xref="GeneID:15416" /db_xref="MGI:MGI:96189" /translation="
MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKEKLERAPETAEQGDAQKGDKK"
misc_feature order(1314..1328,1332..1334,1383..1385,1401..1403, 1440..1442,1446..1451,1458..1463,1467..1475,1479..1484) /gene="Hoxb8" /gene_synonym="Hox-2.4" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(1320..1322,1329..1331,1449..1451,1458..1463, 1470..1472) /gene="Hoxb8" /gene_synonym="Hox-2.4" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1323..1481 /gene="Hoxb8" /gene_synonym="Hox-2.4" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
cttttgaagaggaagctaccccaggcgggctgcccacacctgctgaagagagaatccggacgtgccaatctgggagatttccaaatttgggagaaatggggacctggctttggtgaagattcggtggtgctccaagtcagaggggccactgccccagggcgccgactccagagcctttacatgtgtgcaggtctaggctggccgagtgcctggtcatcaaggctcggacagactctccctagggcagtagaggcagacatggcgacggggagcagtctctggcttttccacgcttccggactcccagctctctctcgcactcgctctctctcgctctcaccctcgctctgcgttctgtccgggaggagtacccagaagccaataggatgcggggtctctaatggatgcaaatgatggtgaaaagacggggcaaaatatgaaacaactcatttggagggaagtaaatcaccgaaaactgtttatgaactggcatcccttcttcgaaatgtaaagcgaggacctctttaagtggcggtatatttttgtttggggggtggggggtggggggagggcgagcgagccgcggctgccatgcaggcttagacttttgcaggcttcgctcttctattcctggaaatcacaaaaagtgtggcggctttgagatcttcttcgtcttttctttcttttccttccttccttcttttttttcccctcctcccttttcctctcctttcctggcgagggtgactaggagccggcgaatccgcgtttttttttctctctctctccctcccttttccccctccccaccccctccccaacagcccccaactacagcctgcgccgccgccgccgccgcctcaaaattcaataaaatgagctcttatttcgtcaactcactgttctccaaatacaaaaccggggagtccctgcgccccaattattatgactgcggcttcgcccaggacctgggcggccgacccaccgtggtgtacggtcccagcagcggcggcagcttccagcacccttcgcaaatccaggagttctaccacgggccatcgtcgctgtccacagctccctaccagcagaacccgtgcgccgtggcgtgccacggcgaccccggcaacttctacggctacgaccctctgcagcgccagagcctgttcggtgcgcaggatccagacctggtgcagtacgcagactgcaagctcgcggcagccagcggcctgggcgaggaggccgaggggtctgagcagagcccgtcgcccacacagctctttccctggatgcgccctcaagcagccgccggacgcaggcgaggccgccagacctacagtcgctaccagaccctggagctggagaaggagttcctatttaatccctatctgactcgcaagcggaggatcgaggtatcgcacgcgctgggactgacagagagacaggtcaaaatctggttccagaatcggagaatgaagtggaaaaaggagaacaacaaagacaagtttcccagcagtaaatgcgagcaggaggagctggagaaagagaagctggagcgggcaccagagaccgccgagcagggcgatgcgcagaagggtgacaagaagtaggctccagctgggactgctcgggcccggactagcccgcacgtccgccggtcccccccgcgaccacgccgccgccgcccgccccccgcctccgagagctccggccccgcgagcggagccaggagctgggcctcccacagcagcgtcccccgccgcgccagtccccgctagtggtagtatctcgtaatagcttctgtgtgtgagctaccgtggatctccttcccttctcttgggggtccggggggaaaaaaagaaaaggattttaagcaaggactccctcgtcctgcgagggtgatcgactgcggcctggcagaaccccctcgcccccgccccatgtaaaaaagcctccttgtgcaatggtctgtttcctttgaacgtgcttctttgtaatgaccgaggtaccgatttctgctaagttttcccaacaacatgaaactgcctattcacgccgtaattctttctgtctcccgctcactttctctctttctctcgctctctttctctcaccgcgtccccatctttcctcgcaaccccctctccccgctgccctccctagctggctttctctcttgcttctctcttttcctcctgtccccccacccccaccccctttggtttgacaattttgtcttaagtgtttctcaaaagagattactttagttagcatgcgcgctgtgagcattgttaaaagtgttcttaggtttactgtgaagagaatgtatcctgtatctgtgaattgctttatgggggggagggagggctaattatatattttgttgttcctctatactttgttctgttgtctgcgcctgaaaagggcggaagagttacaataaagtttacaagcgagaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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