LOCUS       XM_011241765            4284 bp    mRNA    linear   ROD 10-APR-2023
DEFINITION  PREDICTED: Mus musculus trinucleotide repeat containing 6a
            (Tnrc6a), transcript variant X18, mRNA.
ACCESSION   XM_011241765
VERSION     XM_011241765.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011241765.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/05/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4284
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..4284
                     /gene="Tnrc6a"
                     /gene_synonym="2010321I05Rik; 3110054G10Rik; CAGH26;
                     D130023A07Rik; GW182; Tnrc6"
                     /note="trinucleotide repeat containing 6a; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 20 ESTs, 157 long SRA reads, 1 Protein, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:233833"
                     /db_xref="MGI:MGI:2385292"
     CDS             497..4126
                     /gene="Tnrc6a"
                     /gene_synonym="2010321I05Rik; 3110054G10Rik; CAGH26;
                     D130023A07Rik; GW182; Tnrc6"
                     /codon_start=1
                     /product="trinucleotide repeat-containing gene 6A protein
                     isoform X16"
                     /protein_id="XP_011240067.1"
                     /db_xref="GeneID:233833"
                     /db_xref="MGI:MGI:2385292"
                     /translation="

MQLVAEPSLEARCPGSQDTPLPEEWNRDLVQEEEQLMEEKKKKKDDKKKKEAAQKKATEQKIKVPEQIKPSVSQPQPANSDNGTSTATSTNNNAKRATASNQQPPPPQQQQPQQEQQQQQPQALPRYPREVPPRFRHQEHKQLLKRGQHFPVIAANLGSAVKVLNSQSESSAVTNQQPQNNGEVQNSKSQSDINHNTSGSHYENCQRGPVSSTSDCSTSCKNAVNDLLEKEAWPSAPGSDPELAPECIDADSASNSESERNITVMASGNTGGEKDGLRNSTGLGSQSKFVVGSSSNNVGHGSSTGPWGFPHGALISTCQVSVDAPESKPESSNNRMNAWGTVSSSSNGGLNPSTLNSASNHGAWPVLENNGLALKGPVGSGSSGINIQCSTIGQMPNNQNINSKVSGSSTHGTWGSLQETCEPEVSGTQKVSFSGQPQNITTETTGPNNTTNFMTSSLPNSGSVQNNELPTSNPGAWRVSTMNHPQIQAPSVMNGTSLSHLSNGESKTGGSYGTTWGAYGSNYSGDKCAGPNGQANGDTVNATLMQPGINGPMGTNFQVNTNKGGGVWEPGTVNSQSSPWGSGNGANSGGSRRGWGSPAQNTGTGLSSVEWNKLPSNQHSNDSANGNGKKLTNGWKSTEEDDQGSATSQTNEQNSVWAKAGGTVESDGSAESTGRLEEKVTGESQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGERKTDNGTEAWGSSATQTFNSGACTDKTSPNSNDTSSVSGWGDPKPTLRWGDSKGSNCQGGWEDDSAATGMIKSNQWGGCKEDKSTWNDSQKSKQGWGDGQKSSQGWSISAGDNWGESSRSNHWGEANKKSSSGGSDSDRSISGWNELGKTSSFTWGNNINPNNSSGWDESSKPNSSQGWGDPPKCNQSLGWGDSSKPVSSPDWNKQQDIVGSWGIPPATSKPPGTGWLGGPIPAPAKEEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSKYNYKNVNMWNKNIPEASGRSDQQAQMHRLLPAASAVSSKETSSGSGWGEPWAEPSTPATTVDNGTSAWGKPIDSGPSWGEPITAASNASTWGSSSVGPQSLSKSGPKSMQDGWCGDDMPLPGSRPTGWEEEEDVEIGMWNSNSSQELNSSLNWPPYTKKMSSKLHQYCLGQQAPHGTSSGEDEEKGKSMLTLHFTASSSPSH"

     misc_feature    3701..3979
                     /gene="Tnrc6a"
                     /gene_synonym="2010321I05Rik; 3110054G10Rik; CAGH26;
                     D130023A07Rik; GW182; Tnrc6"
                     /note="Argonaute hook; Region: Ago_hook; pfam10427"
                     /db_xref="CDD:431279"
ORIGIN      

tgggctcagactcccccatctgcatccctccctctgtcactgatttggggcggcgggggggggggggcgctcttctagaaacacttcgtctgtcagtctgtgagcaggggtgggggtgggggggggcctgaagttaggcagatttttctcatcacatgatgggggacctgtatcatgtgatggctccggtgatgttggaggcggcatgtgactcccagggctacgtgggctcaaaaacaatttaaatacaaaaacacacgcaggttcccctccttccctttgccttttggtctggctctctctacctttgcgttggtgcctgaccgaatggaaaacccttcttcgttttgcagcctgtgagctccgggtacctggagacaaggcccctgtgctgcccccaccccaggagccgtccccccagcattctgcagtcctctgactatcagcctggtgtggacactgaggcccagagaggtgatgtgatttgcctaaagtcatgcaactagtggcagagcccagcctagaagccaggtgtcctggatctcaagatactccactgcctgaggaatggaacagggatttagtgcaagaagaagaacagttgatggaagaaaagaaaaagaaaaaagacgacaagaaaaagaaggaagctgctcaaaagaaggccactgaacaaaaaatcaaagtgccagaacagataaagcccagtgtaagccagcctcagcctgccaactctgataacggcacttccacagcaaccagcactaataataatgccaagcgagctacagccagcaatcagcagccgccgccaccgcagcagcagcagccgcagcaagagcagcagcagcagcagccacaagccttgcctcggtatccacgtgaagtacctccacgatttcgccaccaggaacacaaacagcttctgaagaggggtcagcattttcctgtcatagcagcaaacttgggatctgctgttaaggtgttaaacagccaatcagaaagcagtgctgtaacaaatcaacagccacaaaataacggagaggtgcagaacagcaagagccagtcagatataaatcataatacttcaggatcccattatgaaaattgccagcggggacctgtgtcttctacaagtgactgtagcacaagctgtaagaatgctgtaaacgacttgttggaaaaagaagcatggccctcagcccctggcagtgatcctgagttggctccagaatgtatagatgctgattctgcctccaattctgagtcagagagaaacatcactgtcatggcttcagggaacacaggtggtgagaaagatggccttcggaacagcactggacttggttctcaaagcaaatttgtggttggtagcagcagcaataatgtgggccatggaagtagtactggcccatggggctttccccatggagccctaataagcacatgtcaggtctctgtggatgctcctgaaagcaaaccagaaagtagtaacaataggatgaatgcttggggcactgtaagttcttcatcaaatggagggttaaatccaagcactttgaattcagctagcaaccatggtgcctggccagtattagaaaacaatggacttgccctaaaagggcctgtagggagtgggagttctggcatcaatattcagtgtagtaccataggccagatgcctaacaatcagaatatcaactctaaagtcagtggctcttctacccatggtacctggggtagccttcaggaaacttgtgagcctgaagtaagtggtacacagaaggtttcattcagtggtcaacctcagaatatcaccactgaaacgactggaccaaataacactactaactttatgacctctagtttaccaaactccggttcagtacaaaataatgaactgcctactagtaatccaggggcctggcgtgtgagcacaatgaatcatcctcagatacaggctccgtcagttatgaatggcacttccctttctcaccttagtaatggagagtcaaaaactggaggctcctacggtactacatggggtgcctatggttctaattactctggcgacaaatgtgcaggccctaatggccaagccaatggtgacactgtgaatgcaactctaatgcagcctggcataaatgggcctatgggcactaactttcaagttaatacaaataaagggggaggtgtatgggagcctgggacagtgaattcccagagttcaccatggggaagtggaaatggtgcaaattctggaggaagtcgaagaggatggggaagtcctgcacagaacactggcactggtctatccagtgtcgagtggaacaaactgcctagcaaccagcattccaatgacagtgcaaatggcaatggtaagaagcttacaaatggatggaaatctactgaggaagacgatcagggttctgccacatctcagacaaatgagcaaaacagtgtgtgggccaaagcaggaggcacagtggagagtgatggtagtgcagagagcactggacgccttgaagaaaaagtaaccggggaaagtcagagtagagatagaagaaaaattgatcagcacacattactccaaagcattgtaaacagaactgacttagatccacgtgtcctatccaactctgggtggggacagactcctattaagcagaatactgcctgggatacagagacatcaccaagaggggaaagaaagactgacaatgggacagaggcctggggaagctctgcaacacagacttttaactcaggggcatgtacagataagactagccctaatagtaatgatacctcatctgtatcagggtggggtgatcccaaacctactctgaggtggggagattccaaaggctcaaactgccagggggggtgggaagatgactctgctgctacaggaatgatcaagagcaaccagtgggggggttgcaaggaagacaagtctacatggaatgattcgcaaaagagcaaacaaggctggggtgacggacaaaagtcaagccaaggttggtccatttctgccggtgataactggggagaatcttccaggagtaaccattggggtgaggccaataagaaatccagctcaggaggcagtgacagtgacaggtccatttctggttggaacgaacttgggaaaactagttcttttacttggggaaataatataaatccaaataactcatcgggatgggatgaatcttctaaaccgaactcttcccaggggtggggagaccctccaaagtgtaatcagtctctaggttggggagattcatcaaagccagttagttctccagattggaacaagcaacaagacattgttggatcatggggaatcccaccagccaccagcaagcctcctggtacaggctggctcgggggacctattcctgctccagcaaaggaggaagaacccacaggctgggaggagccatccccagaatctatacgaagaaaaatggagatcgatgatggaacttcagcttggggagatccaagcaaatacaactacaaaaatgtgaacatgtggaataaaaacatcccggaagccagcggccgctcagaccagcaagcgcagatgcaccggctattgccagccgcaagtgccgtctcaagcaaggagaccagcagtggctctggctggggtgagccttgggcagagccttctactccagccacaactgtggataatggtacttcagcctggggcaagcccatagacagtggtcccagctggggagaacccattactgcagcatccaatgcatccacgtggggctccagctctgttggtccacagtcattaagcaaatctgggcccaaatctatgcaagatggctggtgtggtgatgatatgccattgcctggaagtcgacccactggctgggaagaggaggaggatgtagagattggaatgtggaacagtaactcatctcaagagcttaactcatctttaaattggccaccatataccaagaaaatgtcatcaaagctccaccagtactgcctggggcaacaagccccacatggtaccagcagtggtgaggatgaagagaagggcaaatccatgttgactctccatttcaccgccagttcgtctccatctcattaacctcctcaccagaatcccagccttccccttacccaaagtcaccattctgtttattcactaacatcattgtccctttctcattctcaaggtcctgtgatgaaaatccctaggaagaatttccatacctggctttacatgagaaatgggttgcatttgtt

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