2024-11-01 07:57:26, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_011241765 4284 bp mRNA linear ROD 07-FEB-2024 DEFINITION PREDICTED: Mus musculus trinucleotide repeat containing 6a (Tnrc6a), transcript variant X18, mRNA. ACCESSION XM_011241765 VERSION XM_011241765.3 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 21, 2020 this sequence version replaced XM_011241765.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001635.27-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/01/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4284 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="7" gene 1..4284 /gene="Tnrc6a" /gene_synonym="2010321I05Rik; 3110054G10Rik; CAGH26; D130023A07Rik; GW182; Tnrc6" /note="trinucleotide repeat containing 6a; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 157 long SRA reads, 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:233833" /db_xref="MGI:MGI:2385292" CDS 497..4126 /gene="Tnrc6a" /gene_synonym="2010321I05Rik; 3110054G10Rik; CAGH26; D130023A07Rik; GW182; Tnrc6" /codon_start=1 /product="trinucleotide repeat-containing gene 6A protein isoform X16" /protein_id="XP_011240067.1" /db_xref="GeneID:233833" /db_xref="MGI:MGI:2385292" /translation="
MQLVAEPSLEARCPGSQDTPLPEEWNRDLVQEEEQLMEEKKKKKDDKKKKEAAQKKATEQKIKVPEQIKPSVSQPQPANSDNGTSTATSTNNNAKRATASNQQPPPPQQQQPQQEQQQQQPQALPRYPREVPPRFRHQEHKQLLKRGQHFPVIAANLGSAVKVLNSQSESSAVTNQQPQNNGEVQNSKSQSDINHNTSGSHYENCQRGPVSSTSDCSTSCKNAVNDLLEKEAWPSAPGSDPELAPECIDADSASNSESERNITVMASGNTGGEKDGLRNSTGLGSQSKFVVGSSSNNVGHGSSTGPWGFPHGALISTCQVSVDAPESKPESSNNRMNAWGTVSSSSNGGLNPSTLNSASNHGAWPVLENNGLALKGPVGSGSSGINIQCSTIGQMPNNQNINSKVSGSSTHGTWGSLQETCEPEVSGTQKVSFSGQPQNITTETTGPNNTTNFMTSSLPNSGSVQNNELPTSNPGAWRVSTMNHPQIQAPSVMNGTSLSHLSNGESKTGGSYGTTWGAYGSNYSGDKCAGPNGQANGDTVNATLMQPGINGPMGTNFQVNTNKGGGVWEPGTVNSQSSPWGSGNGANSGGSRRGWGSPAQNTGTGLSSVEWNKLPSNQHSNDSANGNGKKLTNGWKSTEEDDQGSATSQTNEQNSVWAKAGGTVESDGSAESTGRLEEKVTGESQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGERKTDNGTEAWGSSATQTFNSGACTDKTSPNSNDTSSVSGWGDPKPTLRWGDSKGSNCQGGWEDDSAATGMIKSNQWGGCKEDKSTWNDSQKSKQGWGDGQKSSQGWSISAGDNWGESSRSNHWGEANKKSSSGGSDSDRSISGWNELGKTSSFTWGNNINPNNSSGWDESSKPNSSQGWGDPPKCNQSLGWGDSSKPVSSPDWNKQQDIVGSWGIPPATSKPPGTGWLGGPIPAPAKEEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSKYNYKNVNMWNKNIPEASGRSDQQAQMHRLLPAASAVSSKETSSGSGWGEPWAEPSTPATTVDNGTSAWGKPIDSGPSWGEPITAASNASTWGSSSVGPQSLSKSGPKSMQDGWCGDDMPLPGSRPTGWEEEEDVEIGMWNSNSSQELNSSLNWPPYTKKMSSKLHQYCLGQQAPHGTSSGEDEEKGKSMLTLHFTASSSPSH"
misc_feature <1691..>2557 /gene="Tnrc6a" /gene_synonym="2010321I05Rik; 3110054G10Rik; CAGH26; D130023A07Rik; GW182; Tnrc6" /note="serine-rich protein; Region: ser_rich_anae_1; NF033849" /db_xref="CDD:468206" misc_feature <2282..>3088 /gene="Tnrc6a" /gene_synonym="2010321I05Rik; 3110054G10Rik; CAGH26; D130023A07Rik; GW182; Tnrc6" /note="serine-rich protein; Region: ser_rich_anae_1; NF033849" /db_xref="CDD:468206" misc_feature 3701..3976 /gene="Tnrc6a" /gene_synonym="2010321I05Rik; 3110054G10Rik; CAGH26; D130023A07Rik; GW182; Tnrc6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" ORIGIN
tgggctcagactcccccatctgcatccctccctctgtcactgatttggggcggcgggggggggggggcgctcttctagaaacacttcgtctgtcagtctgtgagcaggggtgggggtgggggggggcctgaagttaggcagatttttctcatcacatgatgggggacctgtatcatgtgatggctccggtgatgttggaggcggcatgtgactcccagggctacgtgggctcaaaaacaatttaaatacaaaaacacacgcaggttcccctccttccctttgccttttggtctggctctctctacctttgcgttggtgcctgaccgaatggaaaacccttcttcgttttgcagcctgtgagctccgggtacctggagacaaggcccctgtgctgcccccaccccaggagccgtccccccagcattctgcagtcctctgactatcagcctggtgtggacactgaggcccagagaggtgatgtgatttgcctaaagtcatgcaactagtggcagagcccagcctagaagccaggtgtcctggatctcaagatactccactgcctgaggaatggaacagggatttagtgcaagaagaagaacagttgatggaagaaaagaaaaagaaaaaagacgacaagaaaaagaaggaagctgctcaaaagaaggccactgaacaaaaaatcaaagtgccagaacagataaagcccagtgtaagccagcctcagcctgccaactctgataacggcacttccacagcaaccagcactaataataatgccaagcgagctacagccagcaatcagcagccgccgccaccgcagcagcagcagccgcagcaagagcagcagcagcagcagccacaagccttgcctcggtatccacgtgaagtacctccacgatttcgccaccaggaacacaaacagcttctgaagaggggtcagcattttcctgtcatagcagcaaacttgggatctgctgttaaggtgttaaacagccaatcagaaagcagtgctgtaacaaatcaacagccacaaaataacggagaggtgcagaacagcaagagccagtcagatataaatcataatacttcaggatcccattatgaaaattgccagcggggacctgtgtcttctacaagtgactgtagcacaagctgtaagaatgctgtaaacgacttgttggaaaaagaagcatggccctcagcccctggcagtgatcctgagttggctccagaatgtatagatgctgattctgcctccaattctgagtcagagagaaacatcactgtcatggcttcagggaacacaggtggtgagaaagatggccttcggaacagcactggacttggttctcaaagcaaatttgtggttggtagcagcagcaataatgtgggccatggaagtagtactggcccatggggctttccccatggagccctaataagcacatgtcaggtctctgtggatgctcctgaaagcaaaccagaaagtagtaacaataggatgaatgcttggggcactgtaagttcttcatcaaatggagggttaaatccaagcactttgaattcagctagcaaccatggtgcctggccagtattagaaaacaatggacttgccctaaaagggcctgtagggagtgggagttctggcatcaatattcagtgtagtaccataggccagatgcctaacaatcagaatatcaactctaaagtcagtggctcttctacccatggtacctggggtagccttcaggaaacttgtgagcctgaagtaagtggtacacagaaggtttcattcagtggtcaacctcagaatatcaccactgaaacgactggaccaaataacactactaactttatgacctctagtttaccaaactccggttcagtacaaaataatgaactgcctactagtaatccaggggcctggcgtgtgagcacaatgaatcatcctcagatacaggctccgtcagttatgaatggcacttccctttctcaccttagtaatggagagtcaaaaactggaggctcctacggtactacatggggtgcctatggttctaattactctggcgacaaatgtgcaggccctaatggccaagccaatggtgacactgtgaatgcaactctaatgcagcctggcataaatgggcctatgggcactaactttcaagttaatacaaataaagggggaggtgtatgggagcctgggacagtgaattcccagagttcaccatggggaagtggaaatggtgcaaattctggaggaagtcgaagaggatggggaagtcctgcacagaacactggcactggtctatccagtgtcgagtggaacaaactgcctagcaaccagcattccaatgacagtgcaaatggcaatggtaagaagcttacaaatggatggaaatctactgaggaagacgatcagggttctgccacatctcagacaaatgagcaaaacagtgtgtgggccaaagcaggaggcacagtggagagtgatggtagtgcagagagcactggacgccttgaagaaaaagtaaccggggaaagtcagagtagagatagaagaaaaattgatcagcacacattactccaaagcattgtaaacagaactgacttagatccacgtgtcctatccaactctgggtggggacagactcctattaagcagaatactgcctgggatacagagacatcaccaagaggggaaagaaagactgacaatgggacagaggcctggggaagctctgcaacacagacttttaactcaggggcatgtacagataagactagccctaatagtaatgatacctcatctgtatcagggtggggtgatcccaaacctactctgaggtggggagattccaaaggctcaaactgccagggggggtgggaagatgactctgctgctacaggaatgatcaagagcaaccagtgggggggttgcaaggaagacaagtctacatggaatgattcgcaaaagagcaaacaaggctggggtgacggacaaaagtcaagccaaggttggtccatttctgccggtgataactggggagaatcttccaggagtaaccattggggtgaggccaataagaaatccagctcaggaggcagtgacagtgacaggtccatttctggttggaacgaacttgggaaaactagttcttttacttggggaaataatataaatccaaataactcatcgggatgggatgaatcttctaaaccgaactcttcccaggggtggggagaccctccaaagtgtaatcagtctctaggttggggagattcatcaaagccagttagttctccagattggaacaagcaacaagacattgttggatcatggggaatcccaccagccaccagcaagcctcctggtacaggctggctcgggggacctattcctgctccagcaaaggaggaagaacccacaggctgggaggagccatccccagaatctatacgaagaaaaatggagatcgatgatggaacttcagcttggggagatccaagcaaatacaactacaaaaatgtgaacatgtggaataaaaacatcccggaagccagcggccgctcagaccagcaagcgcagatgcaccggctattgccagccgcaagtgccgtctcaagcaaggagaccagcagtggctctggctggggtgagccttgggcagagccttctactccagccacaactgtggataatggtacttcagcctggggcaagcccatagacagtggtcccagctggggagaacccattactgcagcatccaatgcatccacgtggggctccagctctgttggtccacagtcattaagcaaatctgggcccaaatctatgcaagatggctggtgtggtgatgatatgccattgcctggaagtcgacccactggctgggaagaggaggaggatgtagagattggaatgtggaacagtaactcatctcaagagcttaactcatctttaaattggccaccatataccaagaaaatgtcatcaaagctccaccagtactgcctggggcaacaagccccacatggtaccagcagtggtgaggatgaagagaagggcaaatccatgttgactctccatttcaccgccagttcgtctccatctcattaacctcctcaccagaatcccagccttccccttacccaaagtcaccattctgtttattcactaacatcattgtccctttctcattctcaaggtcctgtgatgaaaatccctaggaagaatttccatacctggctttacatgagaaatgggttgcatttgtt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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