2024-11-01 08:35:24, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_006539100 7404 bp mRNA linear ROD 07-FEB-2024 DEFINITION PREDICTED: Mus musculus macoilin 1 (Maco1), transcript variant X2, mRNA. ACCESSION XM_006539100 VERSION XM_006539100.4 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006539100.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001635.27-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/01/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7404 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="4" gene 1..7404 /gene="Maco1" /gene_synonym="1110007C24Rik; 9230118A01Rik; C61; Tmem57" /note="macoilin 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 1 EST, 267 long SRA reads, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:66146" /db_xref="MGI:MGI:1913396" CDS 815..2236 /gene="Maco1" /gene_synonym="1110007C24Rik; 9230118A01Rik; C61; Tmem57" /codon_start=1 /product="macoilin isoform X1" /protein_id="XP_006539163.1" /db_xref="GeneID:66146" /db_xref="MGI:MGI:1913396" /translation="
MKRRNADCSKLRRPLKRNRITEGIYGSTFLYLKFLVVWALVLLADFVLEFRFEYLWPFWLFIRSVYDSFRYQGLAFSVFFVCVAFTSNIICLLFIPIQWLFFAASTYVWVQYVWHTERGVCLPTVSLWILFVYIEAAIRFKDLKNFHVDLCRPFAAHCIGYPVVTLGFGFKSYVSYKMRLRKQKEVQKENEFYMQLLQQALPPEQQMLQKQEKEAEEAAKGLPDMDSSILIHHNGGIPANKKLSTTLPEIEYREKGKEKDKDAKKHNLGINNNNILQPVDSKIQEIEYMENHINSKRLNNDLVGSTENLLKEDSCTASSKNYKNASGVVNSSPRSHSATNGSIPSSSSKNEKKQKCTSKGPSAHKDLMENCIPNNQLSKPDALVSTKTGFLCLFGVASEVKLPSQAAQLIVMLIASCYLIYLWYRRLRTQMTSDLGLWYLCPLPAPGDCCLLLSPVWTVSSPVGTPRVPCSLT"
misc_feature 818..>1966 /gene="Maco1" /gene_synonym="1110007C24Rik; 9230118A01Rik; C61; Tmem57" /note="Macoilin family; Region: Macoilin; pfam09726" /db_xref="CDD:462859" ORIGIN
gtcaccacgtcgcgggaagctggcagggtgtgtgtgagtgtgtgtgtatgtgtgtgtggtttgctttgtcattcgtggcccggctgacgcggccggtatggctgcgtgctcggctgcccgcagaaggggccgcggcggcgctcccgggacgccctcttacataaggacgcggctgactgaagcacatgtcagcgcaaggtccccacacgcagcgcaccacgccgttcggttctcacacgccaggcgggagcccgcggcgccgcgccacacggtgtacgccgacgtgggcctccccacggcgagacgcagcccaataaccgcgaagcgtaccttcgcaacaaggcataatataggatgttatatttatagggcctatttataagcctctatttaactcttttctgataggcccggccacgcgtctaggccttatcctgattggtgtgtccttctgtccttcaaaaaggcgggcttaagggtccgtgttgcctcagcgggcaccgggattggccgtgcgcggcgcggcggcgccttcgattggctatgcgggccgtccgtcgcggcaaaggaggcggggcgggcggctggctggtgcggggcgggcgggccccggaattgtcatttctttgtttccgaaggcggaggaggctcggcgcccccctcctggccccctcccccccggtgctggctccatgtctgtgtgaccggccgcaggggtaggattcaggcccgacgcggggcgggcgggcgacggcggctgaggtgagaggcggcggcggcggcgcggctcgggcaccggccccccagcgggaggatgaagcggcggaacgccgactgcagtaagctccgccgccccctgaagcggaaccggatcaccgagggtatctacggcagtacatttttatacctgaaattcctggtagtgtgggcacttgtcctccttgccgactttgtcctggagttccgatttgaatacctgtggccgttctggcttttcatcagaagcgtctatgattccttcagataccaaggactggccttctcagtattttttgtttgtgtagcattcacttcaaatatcatatgtctcctcttcattcccatacaatggctttttttcgctgctagcacatatgtatgggtccagtacgtatggcacacagaaaggggagtgtgtttgcctacagtgtcactctggatcctctttgtttatattgaagcagcaattagatttaaagatctgaaaaactttcatgtagacctttgtcgaccgtttgctgctcactgcattggataccctgtggtgactttgggctttggcttcaaaagttatgtgagctacaaaatgcggttaaggaagcagaaggaagttcagaaggagaacgagttttacatgcagcttcttcagcaggccctccctccagagcagcaaatgttgcagaagcaggagaaggaggctgaggaagcagccaagggattgccggacatggattcctcgatccttatacaccacaacggaggcatcccagccaacaaaaaactgtccacaacgttgccagagatagaatatcgagaaaaagggaaagagaaggacaaggatgccaagaaacacaaccttggaataaataacaacaacattctacaacctgtagactctaagatacaagagattgagtatatggaaaaccatatcaatagtaaaagattaaacaatgatcttgtgggaagtacagaaaatctcttaaaagaggactcatgcactgcttcctcaaaaaattacaaaaatgccagtggagttgtgaactcctcgcctcgaagtcacagcgctacaaatggaagcattccttcctcgtctagtaaaaacgagaagaagcagaagtgcaccagcaagggcccgagtgcacacaaggacttaatggagaactgtattcctaacaaccagctgagcaaaccagacgcgctggtaagtaccaaaacaggtttcctgtgtttgtttggtgttgcaagtgaggtgaaactgccttctcaggcagcccagctaattgtgatgctaattgcctcctgctacctgatctacctttggtatagaagattgaggacccaaatgaccagtgacctagggctgtggtatttgtgccccttgcctgctcctggggactgctgcctcctgttgtcaccagtgtggactgtatcttcacctgtaggcacccccagagtgccctgcagcctgacctgaggaccgttgagagagcttctgtaggcgggtcccgtctctgaagagctaggtgagtgcttcagagctttgggctggctatcaggtcattgtgacctgtaactggttacaactagacagaagtacacagaatttatgccagtgctggtcccaccagccagcccacaggggctgggcaagcaggaagtacatttgcttcctcgctaaaattgatgaggttgtagcacttgtaggaagagttccttaatccctcagaagccctggtagggcagagcaggcttagctctgagagatgggagtccatgatggtagggaagtactgtcctctaccctttgatccgactggaattttgaaggttgtaactattacctatatttgtatcttgtttctctctatgacttgcttctagtttaggtagctattggcagttaaattgagtgttgtgcatacatttgaagatgttgcgttaacctcttaacactatttaatcagaacttctttcttctcattaatacattatacatgtgtattttacctagagaagtattgaccttcagctccaagggggttaagtgtaccattaagacaggtagtcatatctgcttactaaatgtccctagcacctgactgtctcagttcagttcagcttgctaattcacatatttctcctaaaatttccagcatccatcattctattaagcagatacaacaattgagccacgtcttataaaattagaaaatggagtggccaggcataatgatatacatcatcaatcccagtacttgggagacagaggcaggcaggtctctgtgagttcaagtgcagccaggattacataataagaccctagctaaaaagaaggggaagagagcctgtgtaagtaaattatacagtaaatgtccttatatactccccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcacgcgcgcgcacatatatatcacatatatataaggtatggcgtgtgaggtagagggcaacttctggaagttggttctctcctttcatggtgtgggttatagaatgcaccttcatccactgagcagttgttagcaccatacagtagagcaccgtgcagtagtttaaggaaagtgtctgagtaggtgaaggtgcagctgatattcaggctgtatgtgtgttaacccccttcatgataaatgtattacatgcatggaaagtggggaaaaggctcgtagggaagaagtacatcagatgcaagccgagtatgatttgattcagcctaaatgagaggagtgtgagttgtttacactttgaattcttttgttagatttttttttttttaatgctgagtgcatttcttgtttttgtttgtttgcttgtttgtttttcgagacagggtttctctgtatagccctggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggtgtgcgccaccactgcccggctgcattttattcttatagtaaaaagttaaacccagtgagaggttataaatcattttaccacctgtttcagtaaaaatttgaactatgtagtaggtcttcaaagtgacagtttcttgcagtagcccatggagattgctcactgcgttttgacttgtgcttttaagtcgaggttttgctgctcaggcagctcagacagtctttagtctttagtagaagtttctttgtcagtatttgaaatgcttagattatggatttcttaggtcactgagactttctcttagcgtactcaactaatgtcattaggtagtgatcgtgaagcccagggtttctcaggcagggacgctgatcttaactatcacgctttggaaagcagtaattaagagttggtggagctaatgacagtagttaggaaaagactgaagcatttttgtcctatttttttatgagaataaattgttttgtattttcaaaacaaaccatttctctggaggtagaagtgggtggatctctgaggccaacctgctctacagtgcttcatcgtaagcctctgtcttggggtgaaggggggcgggggtgatgaggtttcctgagctagaaatgtagctcagtgggagagtctagtattcaggaagctctggattcaagcagtttcctactgcaatatgccatatccacactaaagtatacagatcttgaatgtgtacttctgagcatgtacacactagagtatatagatcttagatgtatacttctgaaaaagtatcctttctttcttaacaaaggaaacatatttttgtaacttccctctttttgttgtatagtactgctggtttggctttgacaatattctcattgaattccacttctaaagagcattttgggagaccagggagatggctcagagggaaaaggcacttgctgccaagcccagtgacttgaagtaatggctctcactcacttacactgtggaaggagcgagcatactctcagaacttgtcctctgaccttcacgtgcatgcacgcatgcagatgtgcacactaactagataagtggaaagaaactttttaaagcattgtgttctgtattttaccaaaattatgtttgtatcctttgttctcaaaactctttatattattgcaaatttcaagaaatcccaaaactttacttagaggaaataatgtcttttgaaacagtatttctctgtgtaacagagttctggacatcctggactccctttgtaaagcagactggcctgaaactctgtctccctgaaactcttgtgtctcctgactgctgggattcactgcatacataccctgaaggccattgtgtcatagagacatttcacttaacgtgaaagactggaagtccggcagtagtggtgtgtgcctttaatcccagcactgaggagacagagggaggcagaactctttgagttctgggccaatctgatctacagagggagttctaggacagccaaggctacacaaagagatcctgtcttaaaaaaacaaaaccaagaccaccaccaacaacaacaaaaccaaaacagaagacttttaaaatgaaaaaaagtgataagtacaaaattactaaaatgtagcatctgaaagaaggggctttttttcttcagtggcagtaagctgtgctgtggaaccagattcccctatctacatctggtacaacttaattaagctgctgctcagaggtaaatcagcagctatttctaaatgtgtcaggcctcaaaatcctagaataagtgggaagaaccttagagatggtcagccgcagatgaggaaactgcaaagatgtgtgcagagttggccctagaggcttaggaccctgatgaccgagccctgtacagaccaaatgcctctgtcctcacagaggagcctgccctttcactaaacacgcactacttcctctgagaggctggcctcacaagagatgtgaacatgagcatgcacttgttaatgggacgaaccctacgcagcctatttgtagtgtagcccttgggttacttcaggtgaatgaaggacagcatagctatgatctaaatgctgatcttcaagtacactgaactgaaatgaccttggtgatagggacagtgtggtgtgatgtggacctgtgactcttccctagggagtgaaccctggcaggagaccaagcagtgcccctggaactcagtctctaggctgtgctctcacaaggaagggaacactggtgatagcgcctgcagtatgactttggggctcgagagtcgttttaaagttgtctaatggtagttaggggaagaaagtgttcagctttctgtaagagaccagggaacattactgagtgagtattgatttctgcagtaggccctgaggactttgcacataataaaacatgtatgagctttagtctgtggatctgacagtccaaagggagatccccattgtgcaccggaagccgtgcttctgtcagtgtgctggactagaggcgctgaggagttttctcaggttggggtggtagttgagaggttaagtgtggcttagcatgagcaagccctggcatgtccttaacaccggggagggatggggtttctgcacacagaacccaagcactgatgtttgctcatctgtccatttgtgtcttgtagaaaaactgtcttctcagagcttcactgtagtgtacgtcctgggcctgatcttcagctcggctatcgaggtccagctgactctttcctactggttctagtacagtctttctcaggcaccagactgagggcttgtccaagcaccatggctgctcgtgcctcggaggttttaagtgtgccaactccattcggagcactcctccttccctgcttcccatcctctgcacagcctgccccagattgctgggctggggaggaggatggatggatcctggggatcctgcctggcgatcgtgggctgcaagattttcttactcttatttcttcatctgggaaaaatgggaataatcattgcagttggcccttagctctgctgattaaattagttcacattgctacggacctatcgggagcagtgcgtccagtcactgaggagtggctgctgctattattcttcctagtgtgtgtttaattgtagcctttcttgtgttactatctaattattttagtcatccagtctttggcccctgttgaaattatagagccttcctgtgaagaagagatttgattttgccctttagttccttttactgcttgcttatatttagaccccaagtgcatatctcttaagctggtgttattatgggctagatggagcaggcagtaaggaatggcacagtaaggtaggttttagcttacagttttcttaatgtcccttttcttgagccttgatgagctcttgtgccataccaaaagtgtgactgttacttagcaagcagtttctggaaatggatggcgatcttgtagcccatgatgagggacagtgcagtctgatctaggagagtgtcaaaaagaagagtctctggctgggttctgagtttattgctctggcaggctttacttgctaaggaagtcagcagtggggaagagacttgaatgtttagctctcctgtttttccctgctcctttatccactactcaggtagacattggggacaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]