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2024-11-01 08:35:24, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_006539100            7404 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus macoilin 1 (Maco1), transcript variant X2,
            mRNA.
ACCESSION   XM_006539100
VERSION     XM_006539100.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006539100.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7404
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..7404
                     /gene="Maco1"
                     /gene_synonym="1110007C24Rik; 9230118A01Rik; C61; Tmem57"
                     /note="macoilin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 5 mRNAs, 1 EST, 267 long
                     SRA reads, 1 Protein, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:66146"
                     /db_xref="MGI:MGI:1913396"
     CDS             815..2236
                     /gene="Maco1"
                     /gene_synonym="1110007C24Rik; 9230118A01Rik; C61; Tmem57"
                     /codon_start=1
                     /product="macoilin isoform X1"
                     /protein_id="XP_006539163.1"
                     /db_xref="GeneID:66146"
                     /db_xref="MGI:MGI:1913396"
                     /translation="
MKRRNADCSKLRRPLKRNRITEGIYGSTFLYLKFLVVWALVLLADFVLEFRFEYLWPFWLFIRSVYDSFRYQGLAFSVFFVCVAFTSNIICLLFIPIQWLFFAASTYVWVQYVWHTERGVCLPTVSLWILFVYIEAAIRFKDLKNFHVDLCRPFAAHCIGYPVVTLGFGFKSYVSYKMRLRKQKEVQKENEFYMQLLQQALPPEQQMLQKQEKEAEEAAKGLPDMDSSILIHHNGGIPANKKLSTTLPEIEYREKGKEKDKDAKKHNLGINNNNILQPVDSKIQEIEYMENHINSKRLNNDLVGSTENLLKEDSCTASSKNYKNASGVVNSSPRSHSATNGSIPSSSSKNEKKQKCTSKGPSAHKDLMENCIPNNQLSKPDALVSTKTGFLCLFGVASEVKLPSQAAQLIVMLIASCYLIYLWYRRLRTQMTSDLGLWYLCPLPAPGDCCLLLSPVWTVSSPVGTPRVPCSLT"
     misc_feature    818..>1966
                     /gene="Maco1"
                     /gene_synonym="1110007C24Rik; 9230118A01Rik; C61; Tmem57"
                     /note="Macoilin family; Region: Macoilin; pfam09726"
                     /db_xref="CDD:462859"
ORIGIN      
gtcaccacgtcgcgggaagctggcagggtgtgtgtgagtgtgtgtgtatgtgtgtgtggtttgctttgtcattcgtggcccggctgacgcggccggtatggctgcgtgctcggctgcccgcagaaggggccgcggcggcgctcccgggacgccctcttacataaggacgcggctgactgaagcacatgtcagcgcaaggtccccacacgcagcgcaccacgccgttcggttctcacacgccaggcgggagcccgcggcgccgcgccacacggtgtacgccgacgtgggcctccccacggcgagacgcagcccaataaccgcgaagcgtaccttcgcaacaaggcataatataggatgttatatttatagggcctatttataagcctctatttaactcttttctgataggcccggccacgcgtctaggccttatcctgattggtgtgtccttctgtccttcaaaaaggcgggcttaagggtccgtgttgcctcagcgggcaccgggattggccgtgcgcggcgcggcggcgccttcgattggctatgcgggccgtccgtcgcggcaaaggaggcggggcgggcggctggctggtgcggggcgggcgggccccggaattgtcatttctttgtttccgaaggcggaggaggctcggcgcccccctcctggccccctcccccccggtgctggctccatgtctgtgtgaccggccgcaggggtaggattcaggcccgacgcggggcgggcgggcgacggcggctgaggtgagaggcggcggcggcggcgcggctcgggcaccggccccccagcgggaggatgaagcggcggaacgccgactgcagtaagctccgccgccccctgaagcggaaccggatcaccgagggtatctacggcagtacatttttatacctgaaattcctggtagtgtgggcacttgtcctccttgccgactttgtcctggagttccgatttgaatacctgtggccgttctggcttttcatcagaagcgtctatgattccttcagataccaaggactggccttctcagtattttttgtttgtgtagcattcacttcaaatatcatatgtctcctcttcattcccatacaatggctttttttcgctgctagcacatatgtatgggtccagtacgtatggcacacagaaaggggagtgtgtttgcctacagtgtcactctggatcctctttgtttatattgaagcagcaattagatttaaagatctgaaaaactttcatgtagacctttgtcgaccgtttgctgctcactgcattggataccctgtggtgactttgggctttggcttcaaaagttatgtgagctacaaaatgcggttaaggaagcagaaggaagttcagaaggagaacgagttttacatgcagcttcttcagcaggccctccctccagagcagcaaatgttgcagaagcaggagaaggaggctgaggaagcagccaagggattgccggacatggattcctcgatccttatacaccacaacggaggcatcccagccaacaaaaaactgtccacaacgttgccagagatagaatatcgagaaaaagggaaagagaaggacaaggatgccaagaaacacaaccttggaataaataacaacaacattctacaacctgtagactctaagatacaagagattgagtatatggaaaaccatatcaatagtaaaagattaaacaatgatcttgtgggaagtacagaaaatctcttaaaagaggactcatgcactgcttcctcaaaaaattacaaaaatgccagtggagttgtgaactcctcgcctcgaagtcacagcgctacaaatggaagcattccttcctcgtctagtaaaaacgagaagaagcagaagtgcaccagcaagggcccgagtgcacacaaggacttaatggagaactgtattcctaacaaccagctgagcaaaccagacgcgctggtaagtaccaaaacaggtttcctgtgtttgtttggtgttgcaagtgaggtgaaactgccttctcaggcagcccagctaattgtgatgctaattgcctcctgctacctgatctacctttggtatagaagattgaggacccaaatgaccagtgacctagggctgtggtatttgtgccccttgcctgctcctggggactgctgcctcctgttgtcaccagtgtggactgtatcttcacctgtaggcacccccagagtgccctgcagcctgacctgaggaccgttgagagagcttctgtaggcgggtcccgtctctgaagagctaggtgagtgcttcagagctttgggctggctatcaggtcattgtgacctgtaactggttacaactagacagaagtacacagaatttatgccagtgctggtcccaccagccagcccacaggggctgggcaagcaggaagtacatttgcttcctcgctaaaattgatgaggttgtagcacttgtaggaagagttccttaatccctcagaagccctggtagggcagagcaggcttagctctgagagatgggagtccatgatggtagggaagtactgtcctctaccctttgatccgactggaattttgaaggttgtaactattacctatatttgtatcttgtttctctctatgacttgcttctagtttaggtagctattggcagttaaattgagtgttgtgcatacatttgaagatgttgcgttaacctcttaacactatttaatcagaacttctttcttctcattaatacattatacatgtgtattttacctagagaagtattgaccttcagctccaagggggttaagtgtaccattaagacaggtagtcatatctgcttactaaatgtccctagcacctgactgtctcagttcagttcagcttgctaattcacatatttctcctaaaatttccagcatccatcattctattaagcagatacaacaattgagccacgtcttataaaattagaaaatggagtggccaggcataatgatatacatcatcaatcccagtacttgggagacagaggcaggcaggtctctgtgagttcaagtgcagccaggattacataataagaccctagctaaaaagaaggggaagagagcctgtgtaagtaaattatacagtaaatgtccttatatactccccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcacgcgcgcgcacatatatatcacatatatataaggtatggcgtgtgaggtagagggcaacttctggaagttggttctctcctttcatggtgtgggttatagaatgcaccttcatccactgagcagttgttagcaccatacagtagagcaccgtgcagtagtttaaggaaagtgtctgagtaggtgaaggtgcagctgatattcaggctgtatgtgtgttaacccccttcatgataaatgtattacatgcatggaaagtggggaaaaggctcgtagggaagaagtacatcagatgcaagccgagtatgatttgattcagcctaaatgagaggagtgtgagttgtttacactttgaattcttttgttagatttttttttttttaatgctgagtgcatttcttgtttttgtttgtttgcttgtttgtttttcgagacagggtttctctgtatagccctggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggtgtgcgccaccactgcccggctgcattttattcttatagtaaaaagttaaacccagtgagaggttataaatcattttaccacctgtttcagtaaaaatttgaactatgtagtaggtcttcaaagtgacagtttcttgcagtagcccatggagattgctcactgcgttttgacttgtgcttttaagtcgaggttttgctgctcaggcagctcagacagtctttagtctttagtagaagtttctttgtcagtatttgaaatgcttagattatggatttcttaggtcactgagactttctcttagcgtactcaactaatgtcattaggtagtgatcgtgaagcccagggtttctcaggcagggacgctgatcttaactatcacgctttggaaagcagtaattaagagttggtggagctaatgacagtagttaggaaaagactgaagcatttttgtcctatttttttatgagaataaattgttttgtattttcaaaacaaaccatttctctggaggtagaagtgggtggatctctgaggccaacctgctctacagtgcttcatcgtaagcctctgtcttggggtgaaggggggcgggggtgatgaggtttcctgagctagaaatgtagctcagtgggagagtctagtattcaggaagctctggattcaagcagtttcctactgcaatatgccatatccacactaaagtatacagatcttgaatgtgtacttctgagcatgtacacactagagtatatagatcttagatgtatacttctgaaaaagtatcctttctttcttaacaaaggaaacatatttttgtaacttccctctttttgttgtatagtactgctggtttggctttgacaatattctcattgaattccacttctaaagagcattttgggagaccagggagatggctcagagggaaaaggcacttgctgccaagcccagtgacttgaagtaatggctctcactcacttacactgtggaaggagcgagcatactctcagaacttgtcctctgaccttcacgtgcatgcacgcatgcagatgtgcacactaactagataagtggaaagaaactttttaaagcattgtgttctgtattttaccaaaattatgtttgtatcctttgttctcaaaactctttatattattgcaaatttcaagaaatcccaaaactttacttagaggaaataatgtcttttgaaacagtatttctctgtgtaacagagttctggacatcctggactccctttgtaaagcagactggcctgaaactctgtctccctgaaactcttgtgtctcctgactgctgggattcactgcatacataccctgaaggccattgtgtcatagagacatttcacttaacgtgaaagactggaagtccggcagtagtggtgtgtgcctttaatcccagcactgaggagacagagggaggcagaactctttgagttctgggccaatctgatctacagagggagttctaggacagccaaggctacacaaagagatcctgtcttaaaaaaacaaaaccaagaccaccaccaacaacaacaaaaccaaaacagaagacttttaaaatgaaaaaaagtgataagtacaaaattactaaaatgtagcatctgaaagaaggggctttttttcttcagtggcagtaagctgtgctgtggaaccagattcccctatctacatctggtacaacttaattaagctgctgctcagaggtaaatcagcagctatttctaaatgtgtcaggcctcaaaatcctagaataagtgggaagaaccttagagatggtcagccgcagatgaggaaactgcaaagatgtgtgcagagttggccctagaggcttaggaccctgatgaccgagccctgtacagaccaaatgcctctgtcctcacagaggagcctgccctttcactaaacacgcactacttcctctgagaggctggcctcacaagagatgtgaacatgagcatgcacttgttaatgggacgaaccctacgcagcctatttgtagtgtagcccttgggttacttcaggtgaatgaaggacagcatagctatgatctaaatgctgatcttcaagtacactgaactgaaatgaccttggtgatagggacagtgtggtgtgatgtggacctgtgactcttccctagggagtgaaccctggcaggagaccaagcagtgcccctggaactcagtctctaggctgtgctctcacaaggaagggaacactggtgatagcgcctgcagtatgactttggggctcgagagtcgttttaaagttgtctaatggtagttaggggaagaaagtgttcagctttctgtaagagaccagggaacattactgagtgagtattgatttctgcagtaggccctgaggactttgcacataataaaacatgtatgagctttagtctgtggatctgacagtccaaagggagatccccattgtgcaccggaagccgtgcttctgtcagtgtgctggactagaggcgctgaggagttttctcaggttggggtggtagttgagaggttaagtgtggcttagcatgagcaagccctggcatgtccttaacaccggggagggatggggtttctgcacacagaacccaagcactgatgtttgctcatctgtccatttgtgtcttgtagaaaaactgtcttctcagagcttcactgtagtgtacgtcctgggcctgatcttcagctcggctatcgaggtccagctgactctttcctactggttctagtacagtctttctcaggcaccagactgagggcttgtccaagcaccatggctgctcgtgcctcggaggttttaagtgtgccaactccattcggagcactcctccttccctgcttcccatcctctgcacagcctgccccagattgctgggctggggaggaggatggatggatcctggggatcctgcctggcgatcgtgggctgcaagattttcttactcttatttcttcatctgggaaaaatgggaataatcattgcagttggcccttagctctgctgattaaattagttcacattgctacggacctatcgggagcagtgcgtccagtcactgaggagtggctgctgctattattcttcctagtgtgtgtttaattgtagcctttcttgtgttactatctaattattttagtcatccagtctttggcccctgttgaaattatagagccttcctgtgaagaagagatttgattttgccctttagttccttttactgcttgcttatatttagaccccaagtgcatatctcttaagctggtgttattatgggctagatggagcaggcagtaaggaatggcacagtaaggtaggttttagcttacagttttcttaatgtcccttttcttgagccttgatgagctcttgtgccataccaaaagtgtgactgttacttagcaagcagtttctggaaatggatggcgatcttgtagcccatgatgagggacagtgcagtctgatctaggagagtgtcaaaaagaagagtctctggctgggttctgagtttattgctctggcaggctttacttgctaaggaagtcagcagtggggaagagacttgaatgtttagctctcctgtttttccctgctcctttatccactactcaggtagacattggggacaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]