GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-11-01 07:55:49, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_006535548            7088 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus potassium large conductance
            calcium-activated channel, subfamily M, beta member 2 (Kcnmb2),
            transcript variant X1, mRNA.
ACCESSION   XM_006535548
VERSION     XM_006535548.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006535548.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7088
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..7088
                     /gene="Kcnmb2"
                     /gene_synonym="2700049B16Rik; 3110031N04Rik"
                     /note="potassium large conductance calcium-activated
                     channel, subfamily M, beta member 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 1 EST, 49 long SRA reads, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:72413"
                     /db_xref="MGI:MGI:1919663"
     CDS             4473..5267
                     /gene="Kcnmb2"
                     /gene_synonym="2700049B16Rik; 3110031N04Rik"
                     /codon_start=1
                     /product="calcium-activated potassium channel subunit
                     beta-2 isoform X1"
                     /protein_id="XP_006535611.1"
                     /db_xref="GeneID:72413"
                     /db_xref="MGI:MGI:1919663"
                     /translation="
MANLHKRSFCHFPRTSTVRKGAAGPTSSKMFIWTSGRTSSSYRQDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIMMYFLLGITLLRSYMQSVWTEEAQCALLNVSITETFNCSFSCGPDCWKLSQYPCLQVYVNLTSSGERLLLYHTEETMKINQKCSYIPKCGNNFEESMSLVSVVMENFRRHQHFPCYSDPEGNQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRINR"
     misc_feature    4563..4655
                     /gene="Kcnmb2"
                     /gene_synonym="2700049B16Rik; 3110031N04Rik"
                     /note="KCNMB2, ball and chain domain; Region:
                     KcnmB2_inactiv; pfam09303"
                     /db_xref="CDD:401299"
     misc_feature    4671..5246
                     /gene="Kcnmb2"
                     /gene_synonym="2700049B16Rik; 3110031N04Rik"
                     /note="Calcium-activated potassium channel, beta subunit;
                     Region: CaKB; pfam03185"
                     /db_xref="CDD:460838"
ORIGIN      
gacccatatagtagacaaaattctaactagaattaatggctaagataaagttcctaaaggagataaagtttataaagtaagataaagattaggattcagatacgataaagtttataaaggagaggctagattgatggtcaaggacaaaagtgagaaatctcacctagaggaaatcagggaccacttgatggacaatggtgcagctttgataagcaaagagcaggatttacattaagatgctacaaaccatgaaatgctgttctaatgtttgattctttccaaatgcacaaaataaaatacattgcactctaagctatatgtcaataaaagtagttgaattaggtaatgtcagagttcagaacagatgtccactaagaacacagaatcaaggaaacagacattgctatcaaagaagacgcaagaccctgtagaaacagcctgaggcaaaagcttgtttggacatggagggtaccatgcaggaaactagcatcctttggttctactcccctttgctcctcataggctttcttcctcccaatgcagaaccatgttgaccttttgccccatgcatttattttctctctgcttcttgaatgtgccttccttgtatttaatttgccatcaccctaccagcctccatgtctgccttggggatcacctttacagttgttttcacttctgtagttatcatgtgatgcaaactgtctgtatactctttattccttttcccaagaaagatatcgacctggggctctcaccaccctgacgtcaggtggccagccatacttcaatcagctttgattatagaagagtggccatttgactcctcaagccccctgtttgcatgcaaaaatggatgcaacggcacatgaataacatgcttttcaaaagtctgtgacatcaacatgctttcattctaggtgggagaagcaataataaaagtttaaaaacaaacaagacaaatgcaggggtggcaaatactaaatacattttgaaagtcattagatgaagagaagggatcacgatgcagggttgaaggcatagctgagtgggttgtgtggctacattataagtaaagcatactgagtcttctctgttctcagccagtcctccccatgaaccagggtgaaaattagcattaaagtttaaaccttacagatgctcctcactgtgcagtgcagctgtgtcctgatgagctcagtatgtaaggtgagaatatggtgaagttaaaaatgcatgtattacaactggtctaccaagcatcacagtgatacagcacactgtcctgcctgtggtttgctctcagtcttgtgtctgtgtgtctggcaggcagggcaatagcacatagctactctggaaaaattgaaattgaatgtctgaaacaaaggctttattaagtatgtttaactctcacaccattgtgtagttaggaaatcctaagtcaaccaactgcatgctaagcatcatccgtacctgctgtcacaagctgtggataggcagtttctgaacacgtgggaggagtcacaaatctggggcatcaaagaaatcgtctcggagaagtaactttgccacgactcctagtctgaactattatttagtggctaaaagctaaccaggttaggggagggggtagagaatcagctacgagagatttttatataaatgttcaggacaaactagagccttgggaagcacactggttcccagacgatgcagtgcccaccagcctcccattctggaactggagcagtcttagttagtacctaggatggctgttcatgtgattgacagaaagaatcctatgcagcctgaactgctctaggggtgggggagggggcgttttatctgtagatatctgtcatcactgtttgaaacactgtttaaaatctaaatcaaagcatccattccaacatttagcctaaggatgtcacaatcctaagacctgactcttttgaagaaaaaaaccaaaaaaacaaaaaatctttaaaatcagaagtctttccgtgacttgtatgtttcctgtcacctttcccaaaccaccccaggctcctgcaaaatcagagaagagaacacaagaaatgttcccttatgtctttcatctgttctacaaatacatacggaaattgttgatccaggcttgtgggtaatgaacctggccttggagaatcatctttcattttcctgtacacactttgcatgtttctgccaagccaggaagacttggatatgattctgtttacatgcacacttataagaactagacagaaattgtatttataaagtaagattatacagaaatggtcctggttacacattatctttattgcaaaaatataaataaaaaagagtgtgatcataaagaaagtaactacctttcctgagatttcccagtagtacaactgaagaaggaaataggtgatatatgttagtttctacatacaaaagagaattcagtgacatatgtcttctttaaaaaaaaaaaaaaacagctttcttcatgtgtccagctgattatagccaatagggaaaactctgttttgaattatgaaaaatgagtgtgttaggatactaagtgactaagtcaaaggacacatttccttgaacagtaagtgggtaactccgagttaatgccccatattggatgtcttttggaaagtttagaagactattaaattgccattaagcttatggaataactggctgtttgaaatgtgatctgcttgctacctgcatttcataaagaaatgcaagcaattgcattaggctacactaatcacggccaaattttattttcttgtctaaaccagaatttaattatacagatatgaaaagggaacttaataacactgacttccaatctcttcttggctggaaatttaccaagaacattatctaattcagcaataggagattatattctctggttagaagattcagttaaaaatttaatctctttgtttccaatataactgaattactacgtgtttaaccaaggatgggtttcttttggtcggacattagaggatggaatttggagacagaatgtcttctccccacagcctcaacttcctttctgtctctgcaattctgatagctgctgaagctctccgaagtgcagaccctcccagtgtggagcgttgtctgctgtacttctcacaggatagttcttttgaaggataaatgagccacgtttttaacagcactcagaagtcagaaactggggagcagatggccagagtgcatggctccttcactgcacgtcagatactcaacagaggttatggtgttctggtgacacaatagttgggtgaaactgagttctgaactatttgccctgcctagaaaagctaggttggaaggagttatccagccagaaatgacgctgttttataagtggaatgtcttgtccaagttctctaagaggactaggaggacctacagataacacaaatcgctggccaggggactaccttccgtggtgctacattaatctgcctcaagaaggtgatgagggagataactcattggaggtgaacacagccattatatctcagtgactggcagcatcttgtgactcccaaggcatccactgctcagcatgaaatttctggttagaggcaggagaatcagaagagtttcctatttgcaaacttatgcagatgggtgaggctcgcttagtaacaatgcagagaagccctgggcagtgtttattctgcagctgaaagatactcttcccagtacttgcaccctcaccctccttcccaccccaaaaacctcacgcgcgcacatacacacacacacacacacacacacacacacacacacacacacacaccacctcccatccaaacttactctcgtgacaagaaggaaagttaattgttacacttgctctttctcattggcacagatctcaatagcccccttctacttcctgcaaatgaaacagaaactatctgaggcacagcaaggtatacatacatagttgggcctcttgtctacagtgctttcgttcctaacagggagtgtctgtccgccagtgttttcagctttagcagctgggctcctcttgacagactgagagaggggtcctcaaggggaaaacattaccatctgattaaggctctcaagcaaattaaaactctctggacaggatcatctttccctctcttagatctcagggaacagaaaggagatcatctctctgggcaattatcaactctgaaagtgcttgtggtttgagactccagcagaacttattgcacacggcatcatcgtaatgtacttgaacaaactcaaatttcagtggctcttctgttccacgtgacccaacatgacatttgtgaagctctgtttccacccctcaggtcatttcttctttgtttctgcacagccaatctgccttatttaagctcaagtcttgtcttagccaccccttttcatagactagacaacttctaattgtccatctcatggccaacctgcacaaaaggtctttctgccacttccccaggacttccacagtgaggaaaggagctgcaggaccaacatcctctaagatgtttatatggaccagtggccggacctcttcatcttacagacaggacgagaaaagaaatatctaccagaaaatcagggaccatgacctcctggacaaaaggaaaactgtgacagctctgaaggctggggaggaccgggccatcctgctcggcctggccatgatggtgtgctccatcatgatgtacttcctgctgggaatcacactgctgcgctcctacatgcagagcgtgtggacagaagaagcccagtgtgccctgctgaatgtgtcaatcacagaaacgtttaactgttccttcagctgtgggcccgactgttggaagctctctcagtacccttgcctgcaggtgtacgtgaacctgacatcttccggggagaggctcctcctctaccacacggaagagaccatgaagatcaatcaaaagtgctcctatattcctaagtgtggaaacaactttgaggagtccatgtctctcgtgagtgtcgtcatggaaaacttcaggagacaccaacacttcccctgctattctgacccagaaggaaaccagaagagtgtcatcctgaccaaactctacagctccaatgtgctgttccattctctcttctggccaacttgtatgatggctgggggtgtggcaatcgttgctatggtgaaactaactcagtacctctccctgctttgtgagaggatccaacggatcaacagataaaagaaaaaaatcatggataagatatttttctttaaagctcaaatactgttttatttcgttcttcaccaaagaaccttaagtttgtaatgtgcagtctgttatgggttccttaattattctatgtagagcaataatgcaaacgctgtcctatatgcaaacatgatgtccttattattcaggagaattaactgttcctcattggttggttgtttcattatattgttttgatgctggaactagtctgtcgtctttccaccagaatagggctcagctactcattgctaagtgttgtggggcataggggcatggaggcactatccccaagaccaggtctctgttctgagtttccagacttcctgaagacaagatttttcttcatttgttgtttactgaagctacagccaaaaacacattttttttcttatcctatattgagccctgtagcaagtgaaggagttgtttcctgactaaagggtattaaacttattattattattattattatttttaccacagcactgtaaggaagggggggaaacctagccagcaacttttctttcatcacttttcattcacaacttcagatttttgaaaataattatcaactctctaatgtcttccgatcagagtcccttttccatctatgaccctgctactgtgtgggagacaaagctggtgagatcactcccagtaaactgactgggtgttggtaggcatgccattgcaattttggaaagtctatgttacaaagatatttatgggaaatcttaattccatttccactggactattagaatcaaatattaatatactaaggactggtgaattggttgcagtgggtgagtctgtcagggccagctatcatgtcagaatattactctttgagaatttatgtttcagtaaacgaatgtatgtagggtctctctttctgaaaaaaaaaaaaaactgttgcctgttggggttttaaatctatgtgtgcagaatctttgtctcctctacatattttatttttctactcactgttcccttttggttgttatattttatatgcagaatagacctttttcctaacacatgtttgaaatgaataacaggtttgagggaagcctttcttcacattgatgtttactcattctatttggtggggggaggggaaagggggttggttttaaataaagacattctgtcttttatttaatattgatatctaagggagaagacaaacatctatctttctcatctatatttaagtacccttttgtaacatagtatcgatgttttttaggtaattgcaaaattttacaaatcatttgtggaatgaacggtgaaacttatctgaggaagcagaatattgtaattcatagtgtgacttttcataagcaaataaatccctagggtgtaatcaggacttcaaatgtgtaattaaattttttaaacccatttgatggcaagattttaatacttcttgcattcagataaacccatgactatccaaacaattctaatttgtattcaaaggtattttaagagactgtaaagaaaatccctttttctgacacttaaacaatacatgttatgttgtaaacatttggaaaacaccacagaaaatcatttatttttattccatctttaaaatgtatttgtcaagatagaagaaaatcctttggaactatagggttgaaatttgcaatcttaaatgttccctgggattcccatcaactgatgcaaggatgaagcatacatgatgacattatgacatactttatttttaacttctttaagatttttcattaaaagttcctagctaagacctggagccaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]