2024-11-01 07:55:49, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_006535548 7088 bp mRNA linear ROD 07-FEB-2024 DEFINITION PREDICTED: Mus musculus potassium large conductance calcium-activated channel, subfamily M, beta member 2 (Kcnmb2), transcript variant X1, mRNA. ACCESSION XM_006535548 VERSION XM_006535548.5 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000069.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 21, 2020 this sequence version replaced XM_006535548.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001635.27-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/01/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7088 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="3" gene 1..7088 /gene="Kcnmb2" /gene_synonym="2700049B16Rik; 3110031N04Rik" /note="potassium large conductance calcium-activated channel, subfamily M, beta member 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 49 long SRA reads, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:72413" /db_xref="MGI:MGI:1919663" CDS 4473..5267 /gene="Kcnmb2" /gene_synonym="2700049B16Rik; 3110031N04Rik" /codon_start=1 /product="calcium-activated potassium channel subunit beta-2 isoform X1" /protein_id="XP_006535611.1" /db_xref="GeneID:72413" /db_xref="MGI:MGI:1919663" /translation="
MANLHKRSFCHFPRTSTVRKGAAGPTSSKMFIWTSGRTSSSYRQDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIMMYFLLGITLLRSYMQSVWTEEAQCALLNVSITETFNCSFSCGPDCWKLSQYPCLQVYVNLTSSGERLLLYHTEETMKINQKCSYIPKCGNNFEESMSLVSVVMENFRRHQHFPCYSDPEGNQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRINR"
misc_feature 4563..4655 /gene="Kcnmb2" /gene_synonym="2700049B16Rik; 3110031N04Rik" /note="KCNMB2, ball and chain domain; Region: KcnmB2_inactiv; pfam09303" /db_xref="CDD:401299" misc_feature 4671..5246 /gene="Kcnmb2" /gene_synonym="2700049B16Rik; 3110031N04Rik" /note="Calcium-activated potassium channel, beta subunit; Region: CaKB; pfam03185" /db_xref="CDD:460838" ORIGIN
gacccatatagtagacaaaattctaactagaattaatggctaagataaagttcctaaaggagataaagtttataaagtaagataaagattaggattcagatacgataaagtttataaaggagaggctagattgatggtcaaggacaaaagtgagaaatctcacctagaggaaatcagggaccacttgatggacaatggtgcagctttgataagcaaagagcaggatttacattaagatgctacaaaccatgaaatgctgttctaatgtttgattctttccaaatgcacaaaataaaatacattgcactctaagctatatgtcaataaaagtagttgaattaggtaatgtcagagttcagaacagatgtccactaagaacacagaatcaaggaaacagacattgctatcaaagaagacgcaagaccctgtagaaacagcctgaggcaaaagcttgtttggacatggagggtaccatgcaggaaactagcatcctttggttctactcccctttgctcctcataggctttcttcctcccaatgcagaaccatgttgaccttttgccccatgcatttattttctctctgcttcttgaatgtgccttccttgtatttaatttgccatcaccctaccagcctccatgtctgccttggggatcacctttacagttgttttcacttctgtagttatcatgtgatgcaaactgtctgtatactctttattccttttcccaagaaagatatcgacctggggctctcaccaccctgacgtcaggtggccagccatacttcaatcagctttgattatagaagagtggccatttgactcctcaagccccctgtttgcatgcaaaaatggatgcaacggcacatgaataacatgcttttcaaaagtctgtgacatcaacatgctttcattctaggtgggagaagcaataataaaagtttaaaaacaaacaagacaaatgcaggggtggcaaatactaaatacattttgaaagtcattagatgaagagaagggatcacgatgcagggttgaaggcatagctgagtgggttgtgtggctacattataagtaaagcatactgagtcttctctgttctcagccagtcctccccatgaaccagggtgaaaattagcattaaagtttaaaccttacagatgctcctcactgtgcagtgcagctgtgtcctgatgagctcagtatgtaaggtgagaatatggtgaagttaaaaatgcatgtattacaactggtctaccaagcatcacagtgatacagcacactgtcctgcctgtggtttgctctcagtcttgtgtctgtgtgtctggcaggcagggcaatagcacatagctactctggaaaaattgaaattgaatgtctgaaacaaaggctttattaagtatgtttaactctcacaccattgtgtagttaggaaatcctaagtcaaccaactgcatgctaagcatcatccgtacctgctgtcacaagctgtggataggcagtttctgaacacgtgggaggagtcacaaatctggggcatcaaagaaatcgtctcggagaagtaactttgccacgactcctagtctgaactattatttagtggctaaaagctaaccaggttaggggagggggtagagaatcagctacgagagatttttatataaatgttcaggacaaactagagccttgggaagcacactggttcccagacgatgcagtgcccaccagcctcccattctggaactggagcagtcttagttagtacctaggatggctgttcatgtgattgacagaaagaatcctatgcagcctgaactgctctaggggtgggggagggggcgttttatctgtagatatctgtcatcactgtttgaaacactgtttaaaatctaaatcaaagcatccattccaacatttagcctaaggatgtcacaatcctaagacctgactcttttgaagaaaaaaaccaaaaaaacaaaaaatctttaaaatcagaagtctttccgtgacttgtatgtttcctgtcacctttcccaaaccaccccaggctcctgcaaaatcagagaagagaacacaagaaatgttcccttatgtctttcatctgttctacaaatacatacggaaattgttgatccaggcttgtgggtaatgaacctggccttggagaatcatctttcattttcctgtacacactttgcatgtttctgccaagccaggaagacttggatatgattctgtttacatgcacacttataagaactagacagaaattgtatttataaagtaagattatacagaaatggtcctggttacacattatctttattgcaaaaatataaataaaaaagagtgtgatcataaagaaagtaactacctttcctgagatttcccagtagtacaactgaagaaggaaataggtgatatatgttagtttctacatacaaaagagaattcagtgacatatgtcttctttaaaaaaaaaaaaaaacagctttcttcatgtgtccagctgattatagccaatagggaaaactctgttttgaattatgaaaaatgagtgtgttaggatactaagtgactaagtcaaaggacacatttccttgaacagtaagtgggtaactccgagttaatgccccatattggatgtcttttggaaagtttagaagactattaaattgccattaagcttatggaataactggctgtttgaaatgtgatctgcttgctacctgcatttcataaagaaatgcaagcaattgcattaggctacactaatcacggccaaattttattttcttgtctaaaccagaatttaattatacagatatgaaaagggaacttaataacactgacttccaatctcttcttggctggaaatttaccaagaacattatctaattcagcaataggagattatattctctggttagaagattcagttaaaaatttaatctctttgtttccaatataactgaattactacgtgtttaaccaaggatgggtttcttttggtcggacattagaggatggaatttggagacagaatgtcttctccccacagcctcaacttcctttctgtctctgcaattctgatagctgctgaagctctccgaagtgcagaccctcccagtgtggagcgttgtctgctgtacttctcacaggatagttcttttgaaggataaatgagccacgtttttaacagcactcagaagtcagaaactggggagcagatggccagagtgcatggctccttcactgcacgtcagatactcaacagaggttatggtgttctggtgacacaatagttgggtgaaactgagttctgaactatttgccctgcctagaaaagctaggttggaaggagttatccagccagaaatgacgctgttttataagtggaatgtcttgtccaagttctctaagaggactaggaggacctacagataacacaaatcgctggccaggggactaccttccgtggtgctacattaatctgcctcaagaaggtgatgagggagataactcattggaggtgaacacagccattatatctcagtgactggcagcatcttgtgactcccaaggcatccactgctcagcatgaaatttctggttagaggcaggagaatcagaagagtttcctatttgcaaacttatgcagatgggtgaggctcgcttagtaacaatgcagagaagccctgggcagtgtttattctgcagctgaaagatactcttcccagtacttgcaccctcaccctccttcccaccccaaaaacctcacgcgcgcacatacacacacacacacacacacacacacacacacacacacacacacaccacctcccatccaaacttactctcgtgacaagaaggaaagttaattgttacacttgctctttctcattggcacagatctcaatagcccccttctacttcctgcaaatgaaacagaaactatctgaggcacagcaaggtatacatacatagttgggcctcttgtctacagtgctttcgttcctaacagggagtgtctgtccgccagtgttttcagctttagcagctgggctcctcttgacagactgagagaggggtcctcaaggggaaaacattaccatctgattaaggctctcaagcaaattaaaactctctggacaggatcatctttccctctcttagatctcagggaacagaaaggagatcatctctctgggcaattatcaactctgaaagtgcttgtggtttgagactccagcagaacttattgcacacggcatcatcgtaatgtacttgaacaaactcaaatttcagtggctcttctgttccacgtgacccaacatgacatttgtgaagctctgtttccacccctcaggtcatttcttctttgtttctgcacagccaatctgccttatttaagctcaagtcttgtcttagccaccccttttcatagactagacaacttctaattgtccatctcatggccaacctgcacaaaaggtctttctgccacttccccaggacttccacagtgaggaaaggagctgcaggaccaacatcctctaagatgtttatatggaccagtggccggacctcttcatcttacagacaggacgagaaaagaaatatctaccagaaaatcagggaccatgacctcctggacaaaaggaaaactgtgacagctctgaaggctggggaggaccgggccatcctgctcggcctggccatgatggtgtgctccatcatgatgtacttcctgctgggaatcacactgctgcgctcctacatgcagagcgtgtggacagaagaagcccagtgtgccctgctgaatgtgtcaatcacagaaacgtttaactgttccttcagctgtgggcccgactgttggaagctctctcagtacccttgcctgcaggtgtacgtgaacctgacatcttccggggagaggctcctcctctaccacacggaagagaccatgaagatcaatcaaaagtgctcctatattcctaag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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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