LOCUS       XM_006508364            3816 bp    mRNA    linear   ROD 10-APR-2023
DEFINITION  PREDICTED: Mus musculus tripartite motif-containing 6 (Trim6),
            transcript variant X2, mRNA.
ACCESSION   XM_006508364
VERSION     XM_006508364.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006508364.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/05/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3816
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..3816
                     /gene="Trim6"
                     /gene_synonym="C430046K18Rik; D7Ertd684e"
                     /note="tripartite motif-containing 6; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 51 ESTs, 25 long SRA reads, 73 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 11 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:94088"
                     /db_xref="MGI:MGI:2137352"
     CDS             375..1841
                     /gene="Trim6"
                     /gene_synonym="C430046K18Rik; D7Ertd684e"
                     /codon_start=1
                     /product="tripartite motif-containing protein 6 isoform
                     X1"
                     /protein_id="XP_006508427.1"
                     /db_xref="GeneID:94088"
                     /db_xref="MGI:MGI:2137352"
                     /translation="

MTSTVLVDIRDEVTCPICLELLTEPLSIDCGHSFCQVCIIGNSNNSVFGQGGRSSCPVCRTSYQPGNLRPNRHLAAIVKRLREVALCPGKQLEVIFCALHGEKLQLFCKEDGKLICWLCERSQEHRGHHTFLMEEVAQEYQDMFQESLKKLRREQQEAEKLKALIQEKRESWKSQVEPEKRRIQTEFKQLRSILDREEQRELKKLEVEERKGLSIIEKAEGDLIHQSQSLKDLISDLEHRCQGSTVELLQDVGDVTKRSEFWTLRKPQALPTKLKSLFRAPDLRKMLKVFRELTDVQSYWVDVTLNPQTANLNLVLSKNRRQVRFVGAQLSEPSSLEEHYDCSVLGSQHFSSGKYYWEVDVSKKTAWILGVCSTPVDPMFSFSQYSSKQGAYSRYQPQCGYWVIGLQCKHEYRAYEDSSPSLLLSMTVPPRRIGIFLDCEAGTVSFYNVTNHGLPIYTFSKYYFPSALCPYFNPCSCIVPMTLRRPTS"

     misc_feature    393..611
                     /gene="Trim6"
                     /gene_synonym="C430046K18Rik; D7Ertd684e"
                     /note="RING finger, HC subclass, found in tripartite
                     motif-containing proteins TRIM5, TRIM6, TRIM22, TRIM34 and
                     similar proteins; Region: RING-HC_TRIM5-like_C-IV;
                     cd16591"
                     /db_xref="CDD:438253"
     misc_feature    order(420..425,429..434,543..548,552..554)
                     /gene="Trim6"
                     /gene_synonym="C430046K18Rik; D7Ertd684e"
                     /note="E2 binding site [polypeptide binding]; other site"
                     /db_xref="CDD:438253"
     misc_feature    663..776
                     /gene="Trim6"
                     /gene_synonym="C430046K18Rik; D7Ertd684e"
                     /note="B-box-type 2 zinc finger found in tripartite
                     motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34,
                     TRIM38 and similar proteins; Region: Bbox2_TRIM5-like;
                     cd19761"
                     /db_xref="CDD:380819"
     misc_feature    <810..>1088
                     /gene="Trim6"
                     /gene_synonym="C430046K18Rik; D7Ertd684e"
                     /note="DNA double-strand break repair ATPase Rad50;
                     Region: PRK03918"
                     /db_xref="CDD:235175"
     misc_feature    1269..1832
                     /gene="Trim6"
                     /gene_synonym="C430046K18Rik; D7Ertd684e"
                     /note="PRY/SPRY domain in tripartite motif-binding protein
                     6 (TRIM6), also known as RING finger protein 89 (RNF89);
                     Region: SPRY_PRY_TRIM6; cd15823"
                     /db_xref="CDD:293995"
ORIGIN      

cccaaccccctcccaagcaggcccggcttcttccaggaagagttgggagatgagctactctacctgccccgacccggtctacaccggctgcaaccagtcggagctaggagccctagggcctctccagaggaagccgaggcaagctgggcggagttaggaacagaccccagccaggatttctggccctcggaattaggcttccggacgtgctctggagaagtttgcctaccgggtactcttcatctgcggaccttctctgggggtgcctaccgccccgttactctgctgagtcacttctgacggaggcaggccgagacagtgaggattctttttctaagcaagctgggaaggtaggagacgagagagtggctacaatgacttcaacagtcttggtggacatccgagatgaagtaacctgccctatctgcttggagctcctgacagaacccctgagcattgattgtggccatagcttctgccaggtctgcatcataggaaacagtaataattcagtgttcggccaaggagggaggagcagctgtcctgtgtgccggacctcctatcagcctgggaacctccgtcctaatcggcacctggccgccatagtgaagaggctcagagaggttgcgttgtgccctggaaaacaactcgaggtcattttttgtgcgcttcatggagagaaactccagctcttttgcaaggaggatgggaagttaatttgctggctttgtgaacgatctcaggagcaccgtggtcatcacacattcctcatggaggaggtggcccaggagtaccaggacatgttccaggagtctctgaagaaattgaggagggagcagcaggaagccgagaagctaaaagctcttatccaggagaagagggaatcctggaagagtcaggtggagcctgagaaacgccggatccagacagagtttaagcagctccgaagcatcctggacagggaggagcagcgggaactgaagaaactggaagtggaagagaggaaggggctgagcatcatagaaaaggccgagggtgacctgatccaccagagccagtcactgaaggacctcatctcagacctggagcaccggtgccaggggtccaccgtagaactgctgcaggatgtgggtgatgttacaaaaaggagtgagttctggaccctgaggaagccccaagctctccccaccaagctgaaaagtttgtttcgagcaccggatctgaggaagatgctaaaagtctttagagagctgacagatgtccaaagctattgggtggacgtgacactgaatccacagacggctaatttaaatcttgtcctgtcgaaaaatcggagacaggtgaggtttgtgggtgcccagctgtccgagccatccagtctggaagaacattatgactgtagtgtcctgggctctcagcacttctcctcaggaaaatactactgggaagtggacgtgagcaagaagacggcatggatcttgggtgtatgcagtaccccggtggatcccatgttctctttcagccagtactccagcaagcagggcgcctactccaggtatcagccacagtgtggatactgggtgattggcttgcagtgtaagcacgagtacagagcctatgaggattcctccccgtccctgctcctctccatgaccgtgccacctcgacgcatagggattttcttagactgtgaggctggcacggtctccttttataatgtcacaaaccacggcttgcccatctacaccttctcgaagtattactttccttctgccctttgtccctattttaatccctgcagctgtatagtcccgatgaccctgcggcggccaacttcctgaggtctgttacccctgcccacaactaagcagattccttcaaacacatgaatctccattctctgttctcctagtaggataccttccattgctaagagtgcgcacccttaagccatctcatggaaaagcatttagtgttttggggtttttgtatttttgcttttgggttgtttatttttgttttttgttttttatttttagagatagggtttctggaactctgtaggtcaaactggccttaaacttggagagatccgcttgcctctcctgagtgctgggacaccagtctagttgtgttttggttttgggttttttgtttgtttgtttgttttttgtttgtttgtatttttgaaacaggctggccttgaactctgtgattgagaaactaactgagaactgatccagagtcccgattacaagtggacatcaccatacctggctgtgaatttgttttagtgttgtttgagatagggtctccataaatagcccaaactggccacagactcagtccatttgcctcactcccaaatactgattatagatctacctcacagtgcctgactgagctcccaaatactgattatagctctacctcacagcacctgactgagctcccaaatactgattatagatctacctcacagtgcctgactgagctcccaaatactgattatagatctacctcacagcgcctgactgagctctcaaatactgattatagctctacctcacagcgcctgactgagcacatttgacgacttttttctttactaatgtctgtggtcaaatgtaaagaacctctgaattagataggaattttttaataaatattgaattcagtaattttttttctctagttactgagatacttgtgtatcctttctattctgctcctgggtcagcctcactgagttgtctcagttgttacgtttaccactgattcctgaagcaaaactgtcatgtgttacattcagcactttatgtttgctgactctaggtttggtttttgtctctttataaacaaactacctctaagtttgcattctttgttatctgtcaaggcatatcagaaagaaattatggggaagggcttatgtatgtgtatttaggatcacaataaatcctaagtatgtatatttaggattacagtaaaaataataaaatctttggatggtttcaagaagagattgtagctttggttttaacaataaatgctaccacaaccttcagccttcagcataaaattttaagagtggtaataaaaactagaaaatgctcttgaaagggagataaagtaagataaggagaagacttcaatcaaccagtatcagttattatttaggaggaggaagaaattcagttacccattctcacagtgagttattctggtccccccagcccctcttatttcttctgtagagctaggtactgaactcggctttttacttcaagcagagacattttagcaccaagcttaaccccatttttgtgttttgtattgttattattggggtttgtttgtttgtttgttttgttttgctgacacagggttttaacacatttcccaggctggccttgagcttgctatcaagtgcaggctgactttaagctttgcctcagcatcctgagtaactaggtgtttagggtaatactgacttttcatcttagcctggaccttctctttgtgctcatattcaaattgcaaatgagtgaaccgctttggctttgctggaaaggtgcaacaaactttcatattcaactgtgaaaaaagttatagctgtgaagatggaaatgagtgtcgggggaggtgcagctggacttctgacactgcagacaagggctactcgtggcttttggtactctccaatgtactgtaacagtgaaatactgaatttccataaaagcaatgtaaaataatctattatcttacaatgatggtattttggatatattttaaataaaatgttttatttcagga

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