2024-11-01 08:37:13, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_006508364 3816 bp mRNA linear ROD 07-FEB-2024 DEFINITION PREDICTED: Mus musculus tripartite motif-containing 6 (Trim6), transcript variant X2, mRNA. ACCESSION XM_006508364 VERSION XM_006508364.3 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 21, 2020 this sequence version replaced XM_006508364.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001635.27-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/01/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3816 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="7" gene 1..3816 /gene="Trim6" /gene_synonym="C430046K18Rik; D7Ertd684e" /note="tripartite motif-containing 6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 51 ESTs, 25 long SRA reads, 73 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns" /db_xref="GeneID:94088" /db_xref="MGI:MGI:2137352" CDS 375..1841 /gene="Trim6" /gene_synonym="C430046K18Rik; D7Ertd684e" /codon_start=1 /product="tripartite motif-containing protein 6 isoform X1" /protein_id="XP_006508427.1" /db_xref="GeneID:94088" /db_xref="MGI:MGI:2137352" /translation="
MTSTVLVDIRDEVTCPICLELLTEPLSIDCGHSFCQVCIIGNSNNSVFGQGGRSSCPVCRTSYQPGNLRPNRHLAAIVKRLREVALCPGKQLEVIFCALHGEKLQLFCKEDGKLICWLCERSQEHRGHHTFLMEEVAQEYQDMFQESLKKLRREQQEAEKLKALIQEKRESWKSQVEPEKRRIQTEFKQLRSILDREEQRELKKLEVEERKGLSIIEKAEGDLIHQSQSLKDLISDLEHRCQGSTVELLQDVGDVTKRSEFWTLRKPQALPTKLKSLFRAPDLRKMLKVFRELTDVQSYWVDVTLNPQTANLNLVLSKNRRQVRFVGAQLSEPSSLEEHYDCSVLGSQHFSSGKYYWEVDVSKKTAWILGVCSTPVDPMFSFSQYSSKQGAYSRYQPQCGYWVIGLQCKHEYRAYEDSSPSLLLSMTVPPRRIGIFLDCEAGTVSFYNVTNHGLPIYTFSKYYFPSALCPYFNPCSCIVPMTLRRPTS"
misc_feature 393..611 /gene="Trim6" /gene_synonym="C430046K18Rik; D7Ertd684e" /note="RING finger, HC subclass, found in tripartite motif-containing proteins TRIM5, TRIM6, TRIM22, TRIM34 and similar proteins; Region: RING-HC_TRIM5-like_C-IV; cd16591" /db_xref="CDD:438253" misc_feature order(420..425,429..434,543..548,552..554) /gene="Trim6" /gene_synonym="C430046K18Rik; D7Ertd684e" /note="E2 binding site [polypeptide binding]; other site" /db_xref="CDD:438253" misc_feature 663..776 /gene="Trim6" /gene_synonym="C430046K18Rik; D7Ertd684e" /note="B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34, TRIM38 and similar proteins; Region: Bbox2_TRIM5-like; cd19761" /db_xref="CDD:380819" misc_feature <810..>1088 /gene="Trim6" /gene_synonym="C430046K18Rik; D7Ertd684e" /note="DNA double-strand break repair ATPase Rad50; Region: PRK03918" /db_xref="CDD:235175" misc_feature 1269..1832 /gene="Trim6" /gene_synonym="C430046K18Rik; D7Ertd684e" /note="PRY/SPRY domain in tripartite motif-binding protein 6 (TRIM6), also known as RING finger protein 89 (RNF89); Region: SPRY_PRY_TRIM6; cd15823" /db_xref="CDD:293995" ORIGIN
cccaaccccctcccaagcaggcccggcttcttccaggaagagttgggagatgagctactctacctgccccgacccggtctacaccggctgcaaccagtcggagctaggagccctagggcctctccagaggaagccgaggcaagctgggcggagttaggaacagaccccagccaggatttctggccctcggaattaggcttccggacgtgctctggagaagtttgcctaccgggtactcttcatctgcggaccttctctgggggtgcctaccgccccgttactctgctgagtcacttctgacggaggcaggccgagacagtgaggattctttttctaagcaagctgggaaggtaggagacgagagagtggctacaatgacttcaacagtcttggtggacatccgagatgaagtaacctgccctatctgcttggagctcctgacagaacccctgagcattgattgtggccatagcttctgccaggtctgcatcataggaaacagtaataattcagtgttcggccaaggagggaggagcagctgtcctgtgtgccggacctcctatcagcctgggaacctccgtcctaatcggcacctggccgccatagtgaagaggctcagagaggttgcgttgtgccctggaaaacaactcgaggtcattttttgtgcgcttcatggagagaaactccagctcttttgcaaggaggatgggaagttaatttgctggctttgtgaacgatctcaggagcaccgtggtcatcacacattcctcatggaggaggtggcccaggagtaccaggacatgttccaggagtctctgaagaaattgaggagggagcagcaggaagccgagaagctaaaagctcttatccaggagaagagggaatcctggaagagtcaggtggagcctgagaaacgccggatccagacagagtttaagcagctccgaagcatcctggacagggaggagcagcgggaactgaagaaactggaagtggaagagaggaaggggctgagcatcatagaaaaggccgagggtgacctgatccaccagagccagtcactgaaggacctcatctcagacctggagcaccggtgccaggggtccaccgtagaactgctgcaggatgtgggtgatgttacaaaaaggagtgagttctggaccctgaggaagccccaagctctccccaccaagctgaaaagtttgtttcgagcaccggatctgaggaagatgctaaaagtctttagagagctgacagatgtccaaagctattgggtggacgtgacactgaatccacagacggctaatttaaatcttgtcctgtcgaaaaatcggagacaggtgaggtttgtgggtgcccagctgtccgagccatccagtctggaagaacattatgactgtagtgtcctgggctctcagcacttctcctcaggaaaatactactgggaagtggacgtgagcaagaagacggcatggatcttgggtgtatgcagtaccccggtggatcccatgttctctttcagccagtactccagcaagcagggcgcctactccaggtatcagccacagtgtggatactgggtgattggcttgcagtgtaagcacgagtacagagcctatgaggattcctccccgtccctgctcctctccatgaccgtgccacctcgacgcatagggattttcttagactgtgaggctggcacggtctccttttataatgtcacaaaccacggcttgcccatctacaccttctcgaagtattactttccttctgccctttgtccctattttaatccctgcagctgtatagtcccgatgaccctgcggcggccaacttcctgaggtctgttacccctgcccacaactaagcagattccttcaaacacatgaatctccattctctgttctcctagtaggataccttccattgctaagagtgcgcacccttaagccatctcatggaaaagcatttagtgttttggggtttttgtatttttgcttttgggttgtttatttttgttttttgttttttatttttagagatagggtttctggaactctgtaggtcaaactggccttaaacttggagagatccgcttgcctctcctgagtgctgggacaccagtctagttgtgttttggttttgggttttttgtttgtttgtttgttttttgtttgtttgtatttttgaaacaggctggccttgaactctgtgattgagaaactaactgagaactgatccagagtcccgattacaagtggacatcaccatacctggctgtgaatttgttttagtgttgtttgagatagggtctccataaatagcccaaactggccacagactcagtccatttgcctcactcccaaatactgattatagatctacctcacagtgcctgactgagctcccaaatactgattatagctctacctcacagcacctgactgagctcccaaatactgattatagatctacctcacagtgcctgactgagctcccaaatactgattatagatctacctcacagcgcctgactgagctctcaaatactgattatagctctacctcacagcgcctgactgagcacatttgacgacttttttctttactaatgtctgtggtcaaatgtaaagaacctctgaattagataggaattttttaataaatattgaattcagtaattttttttctctagttactgagatacttgtgtatcctttctattctgctcctgggtcagcctcactgagttgtctcagttgttacgtttaccactgattcctgaagcaaaactgtcatgtgttacattcagcactttatgtttgctgactctaggtttggtttttgtctctttataaacaaactacctctaagtttgcattctttgttatctgtcaaggcatatcagaaagaaattatggggaagggcttatgtatgtgtatttaggatcacaataaatcctaagtatgtatatttaggattacagtaaaaataataaaatctttggatggtttcaagaagagattgtagctttggttttaacaataaatgctaccacaaccttcagccttcagcataaaattttaagagtggtaataaaaactagaaaatgctcttgaaagggagataaagtaagataaggagaagacttcaatcaaccagtatcagttattatttaggaggaggaagaaattcagttacccattctcacagtgagttattctggtccccccagcccctcttatttcttctgtagagctaggtactgaactcggctttttacttcaagcagagacattttagcaccaagcttaaccccatttttgtgttttgtattgttattattggggtttgtttgtttgtttgttttgttttgctgacacagggttttaacacatttcccaggctggccttgagcttgctatcaagtgcaggctgactttaagctttgcctcagcatcctgagtaactaggtgtttagggtaatactgacttttcatcttagcctggaccttctctttgtgctcatattcaaattgcaaatgagtgaaccgctttggctttgctggaaaggtgcaacaaactttcatattcaactgtgaaaaaagttatagctgtgaagatggaaatgagtgtcgggggaggtgcagctggacttctgacactgcagacaagggctactcgtggcttttggtactctccaatgtactgtaacagtgaaatactgaatttccataaaagcaatgtaaaataatctattatcttacaatgatggtattttggatatattttaaataaaatgttttatttcagga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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