LOCUS       NR_186734               2570 bp    RNA     linear   ROD 05-JUL-2023
DEFINITION  Mus musculus zinc finger protein 410 (Zfp410), transcript variant
            13, non-coding RNA.
ACCESSION   NR_186734 XR_003950067
VERSION     NR_186734.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2570)
  AUTHORS   Vinjamur DS, Yao Q, Cole MA, McGuckin C, Ren C, Zeng J, Hossain M,
            Luk K, Wolfe SA, Pinello L and Bauer DE.
  TITLE     ZNF410 represses fetal globin by singular control of CHD4
  JOURNAL   Nat Genet 53 (5), 719-728 (2021)
   PUBMED   33859416
REFERENCE   2  (bases 1 to 2570)
  AUTHORS   Campbell GR, Baudhuin A, Vranizan K and Ngai J.
  TITLE     Transcription factors expressed in olfactory bulb local progenitor
            cells revealed by genome-wide transcriptome profiling
  JOURNAL   Mol Cell Neurosci 46 (2), 548-561 (2011)
   PUBMED   21194568
REFERENCE   3  (bases 1 to 2570)
  AUTHORS   Guo G, Huss M, Tong GQ, Wang C, Li Sun L, Clarke ND and Robson P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   4  (bases 1 to 2570)
  AUTHORS   Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S,
            Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N,
            Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y,
            Okado H, Hashimoto M and Asahara H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   5  (bases 1 to 2570)
  AUTHORS   Pritsker M, Doniger TT, Kramer LC, Westcot SE and Lemischka IR.
  TITLE     Diversification of stem cell molecular repertoire by alternative
            splicing
  JOURNAL   Proc Natl Acad Sci U S A 102 (40), 14290-14295 (2005)
   PUBMED   16183747
REFERENCE   6  (bases 1 to 2570)
  AUTHORS   Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng
            EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC,
            Babbitt PC and Ferrin TE.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   7  (bases 1 to 2570)
  AUTHORS   Benanti JA, Williams DK, Robinson KL, Ozer HL and Galloway DA.
  TITLE     Induction of extracellular matrix-remodeling genes by the
            senescence-associated protein APA-1
  JOURNAL   Mol Cell Biol 22 (21), 7385-7397 (2002)
   PUBMED   12370286
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC159649.3.
            
            On Jul 5, 2023 this sequence version replaced XR_003950067.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.3754530.1,
                                           ERR3363660.2958173.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-92                AC159649.3         168334-168425
            93-272              AC159649.3         173028-173207
            273-408             AC159649.3         174100-174235
            409-627             AC159649.3         176787-177005
            628-819             AC159649.3         178495-178686
            820-970             AC159649.3         181018-181168
            971-1152            AC159649.3         182851-183032
            1153-1242           AC159649.3         184151-184240
            1243-1368           AC159649.3         188832-188957
            1369-1509           AC159649.3         189858-189998
            1510-1712           AC159649.3         190267-190469
            1713-1840           AC159649.3         191318-191445
            1841-2570           AC159649.3         194211-194940
FEATURES             Location/Qualifiers
     source          1..2570
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 39.15 cM"
     gene            1..2570
                     /gene="Zfp410"
                     /gene_synonym="Apa1; D12Ertd748e; Znf410"
                     /note="zinc finger protein 410"
                     /db_xref="GeneID:52708"
                     /db_xref="MGI:MGI:1289280"
     misc_RNA        1..2570
                     /gene="Zfp410"
                     /gene_synonym="Apa1; D12Ertd748e; Znf410"
                     /product="zinc finger protein 410, transcript variant 13"
                     /db_xref="GeneID:52708"
                     /db_xref="MGI:MGI:1289280"
     exon            1..92
                     /gene="Zfp410"
                     /gene_synonym="Apa1; D12Ertd748e; Znf410"
                     /inference="alignment:Splign:2.1.0"
     exon            93..272
                     /gene="Zfp410"
                     /gene_synonym="Apa1; D12Ertd748e; Znf410"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    240..1532
                     /gene="Zfp410"
                     /gene_synonym="Apa1; D12Ertd748e; Znf410"
                     /inference="COORDINATES:
                     alignment:Blast2seq::RefSeq|NM_144833.4"
                     /note="primary ORF has stop codon >50 nucleotides from the
                     terminal splice site; nonsense-mediated decay (NMD)
                     candidate"
     exon            273..408
                     /gene="Zfp410"
                     /gene_synonym="Apa1; D12Ertd748e; Znf410"
                     /inference="alignment:Splign:2.1.0"
     exon            409..627
                     /gene="Zfp410"
                     /gene_synonym="Apa1; D12Ertd748e; Znf410"
                     /inference="alignment:Splign:2.1.0"
     exon            628..819
                     /gene="Zfp410"
                     /gene_synonym="Apa1; D12Ertd748e; Znf410"
                     /inference="alignment:Splign:2.1.0"
     exon            820..970
                     /gene="Zfp410"
                     /gene_synonym="Apa1; D12Ertd748e; Znf410"
                     /inference="alignment:Splign:2.1.0"
     exon            971..1152
                     /gene="Zfp410"
                     /gene_synonym="Apa1; D12Ertd748e; Znf410"
                     /inference="alignment:Splign:2.1.0"
     exon            1153..1242
                     /gene="Zfp410"
                     /gene_synonym="Apa1; D12Ertd748e; Znf410"
                     /inference="alignment:Splign:2.1.0"
     exon            1243..1368
                     /gene="Zfp410"
                     /gene_synonym="Apa1; D12Ertd748e; Znf410"
                     /inference="alignment:Splign:2.1.0"
     exon            1369..1509
                     /gene="Zfp410"
                     /gene_synonym="Apa1; D12Ertd748e; Znf410"
                     /inference="alignment:Splign:2.1.0"
     exon            1510..1712
                     /gene="Zfp410"
                     /gene_synonym="Apa1; D12Ertd748e; Znf410"
                     /inference="alignment:Splign:2.1.0"
     exon            1713..1840
                     /gene="Zfp410"
                     /gene_synonym="Apa1; D12Ertd748e; Znf410"
                     /inference="alignment:Splign:2.1.0"
     exon            1841..2570
                     /gene="Zfp410"
                     /gene_synonym="Apa1; D12Ertd748e; Znf410"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtgtgtggacgggattcggggctgactgacggacggacggctgcccgagactggaaggtgagctccaggctagtgtagccacccccgctcgggttaaattgattaccaacctagttcagcatcttacaggaaaagtgtaatgctttttaaagggatatgaatataacaggaaggtgtcattgactgaattagacttgaacctgtccctgatcagctacaggatttcagaagctgaatcaatgttatcagatgagttagaatccaaaccagagctcctggttcagtttgttcagaatacctccatccccctgggacaagggctagtagaatcagaagctaaagacattacttgcttatccctccttccagtgaccgaggcctcagaatgcagccgactaatgttaccagatgaaactccaaatcatgctaattcctccaaggaggtcccttcttcagctgttttgaggagccttcaggtgaatgtgggcccagacggagaagagacaagggctcagactgtacagaagtccccagagttcctgaccacaccagagtcgcctagcttgttgcaagatctacagccaagtgatagcacttccttcattcttctgaacctaacgagagcagggctgggctcttcagctgagcactttgtgtttgttcaggatgagacagaggactcaggggctgacttcctctctgctgagagcacagacagcagtatcccatggttcctccgggttcaggaactggcccatgacagtctgattgcggctactcgtgcacagctggccaagaatgcaaaaactggcagcaatggagaaaatgtccaccttggctctggtgatgggcaaccaaaagactctggtccccttcctcaagcggagaagaagctcaagtgcacagttgaaggctgtgaccggacatttgtgtggccagctcacttcaagtaccaccttaaaactcaccgaaatgagcgctccttcatctgccctgcagaaggttgtgggaaaagcttttatgtgctgcagaggctgaaggtgcacatgaggacacacaatggggagaaaccctttatgtgccacgagtctgggtgtggtaagcagttcactacagctgggaacctgaagaaccaccggcgcatccacacaggagagaagccttttctctgtgaagcccagggatgtggccgttcctttgctgagtattcaagcctccggaaacatctggtagttcactcaggtgagaagcctcatcagtgccaggtctgtgggaagaccttctctcagagtgggagtaggaatgtgcatatgagaaagcatcacttgcagctggggacaactgggagtcaagaacaggatcaaaccgccgagccactaatgggcagtagtttgcttgaagacgcttcagttcccaataaaaacctggtgtctatgaattcccagtccagccttggtggagagtccttgaatctatcaaataccaattctatccttggagttgatgatgttatggaagagcttaacttttaaaacatttaaacagagcataaccaggttttacagaggagatacaaagcaatttctccataccttcaaaagccatgtcttctggagaacagaaagggctctctaggaaacagttgctcctctggtatagaaatttcacccagcttacacaggccaggccctcttctctgaaaatcttaccagaggtgcttactgaaagagcctcacggcccctgtcttctgtgcctgatgtgacacatcacttggtgaccatgcagtcagggaggcagtcctatgaagtttctgtcttaactgcggtaaatccgcaggagttactaaaccaaggagatttaactgaaagacagacatgagtgtgctgactcctggagatgctgttgtctgatcccagagtgcatgatgggaacagatccaaaggctcataatctgccagaactaaaaggagtctgaaggaccaagaccttgccttgcctctgttgtctgagggctctcttcaacctccaccgatgcagtccaagagtgaagcagtggccgtgggctggatacctgtgccgcctctctcctcagcgcagcgtttgggagtagacttgccaagagcaggtttaattatgtgttggctgaagattttcattgtgactgtcaaggttttcctttgaagagttttcaccctaggcccagctatctttccatatggttgaattatgtcctgcttccaaccagaacactgagttttcaagatgccttgttgctttgaagaagggaggggtgccaattacactgtagcattgcactctccctttagcaacctgagtaagacttagcctttgggctgtaaaaattaaattacttgaatctctccttggcccaggctgaggtaccaacttaccctgtacactttgacttggtcatttttttgttttgtttatgggacttaaaatagcatgttatcagggggttttatttgttgttgttgtttttttttaagttaaaaaccacatgatctagagtttgttttccttttaaataaacaaaacaacctagtca

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