LOCUS       NR_184677               1798 bp    RNA     linear   ROD 08-AUG-2023
DEFINITION  Mus musculus dihydrouridine synthase 4 like (Dus4l), transcript
            variant 5, non-coding RNA.
ACCESSION   NR_184677 XM_036157618
VERSION     NR_184677.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1798)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC119950.14.
            
            On Mar 14, 2023 this sequence version replaced XM_036157618.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR17784650.1050641.1,
                                           SRR17784649.480250.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-146               AC119950.14        121960-122105       c
            147-297             AC119950.14        119561-119711       c
            298-435             AC119950.14        116036-116173       c
            436-553             AC119950.14        113891-114008       c
            554-676             AC119950.14        110034-110156       c
            677-903             AC119950.14        108772-108998       c
            904-1798            AC119950.14        107320-108214       c
FEATURES             Location/Qualifiers
     source          1..1798
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 13.68 cM"
     gene            1..1798
                     /gene="Dus4l"
                     /gene_synonym="2310069P03Rik; 2700089B10Rik; Pp35"
                     /note="dihydrouridine synthase 4 like"
                     /db_xref="GeneID:71916"
                     /db_xref="MGI:MGI:1919166"
     misc_RNA        1..1798
                     /gene="Dus4l"
                     /gene_synonym="2310069P03Rik; 2700089B10Rik; Pp35"
                     /product="dihydrouridine synthase 4 like, transcript
                     variant 5"
                     /db_xref="GeneID:71916"
                     /db_xref="MGI:MGI:1919166"
     exon            1..146
                     /gene="Dus4l"
                     /gene_synonym="2310069P03Rik; 2700089B10Rik; Pp35"
                     /inference="alignment:Splign:2.1.0"
     exon            147..297
                     /gene="Dus4l"
                     /gene_synonym="2310069P03Rik; 2700089B10Rik; Pp35"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    182..325
                     /gene="Dus4l"
                     /gene_synonym="2310069P03Rik; 2700089B10Rik; Pp35"
                     /inference="COORDINATES:
                     alignment:Blast2seq::RefSeq|NM_028002.3"
                     /note="primary ORF has stop codon >50 nucleotides from the
                     terminal splice site; nonsense-mediated decay (NMD)
                     candidate"
     exon            298..435
                     /gene="Dus4l"
                     /gene_synonym="2310069P03Rik; 2700089B10Rik; Pp35"
                     /inference="alignment:Splign:2.1.0"
     exon            436..553
                     /gene="Dus4l"
                     /gene_synonym="2310069P03Rik; 2700089B10Rik; Pp35"
                     /inference="alignment:Splign:2.1.0"
     exon            554..676
                     /gene="Dus4l"
                     /gene_synonym="2310069P03Rik; 2700089B10Rik; Pp35"
                     /inference="alignment:Splign:2.1.0"
     exon            677..903
                     /gene="Dus4l"
                     /gene_synonym="2310069P03Rik; 2700089B10Rik; Pp35"
                     /inference="alignment:Splign:2.1.0"
     exon            904..1798
                     /gene="Dus4l"
                     /gene_synonym="2310069P03Rik; 2700089B10Rik; Pp35"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcagaatcaaggcgccgccccacctgcccggcccgggttgcgtttgggaacctaagtactacaatcctacgtgcaaggaaagacaggtcgccgccggggccttctcccattccgctccggacgcagccaccgcgccgatctccaacactgtctttttcagacttgaaactaacctgtacacatgagaagtgactccttaccaaccacaatatgtcaagaaagaaaaaaagacccgatagaaatgtttcattctggacagctggtaaaagtctgtgccccgatggttcgatattcaaattttatatgcttgcaggttagcttttagaacattagtaagaaaatactcttgtgacctgtgttacacaccaatgataattgctgctgattttgtcagatctataaaagccagagacagtgaatttaccacaaaccaaggtgattgcccgttgattgttcagtttgctgctaatgatgcaagacttttatctgatgctgccctgctagtctgtccctatgcaaatggaatagatattaactgtggttgccctcagaggtgggcgatggcggacggttatggagcttgcttgatcaacaagccagagcttgttcacgatatggtgagacaagtgagaaatcgggtggaaagcccaaggttttcagtttccattaagataaggatccacgatgacctggcaagaaccatagatctttgccggaaggctgaagcaacaggagtgtcctggattacagttcatggaaggacagttgaagaaagacaccagccagtccactacgatgccattaaaatgataaaggaaaatgtgtctatacccatagttgctaatggagacataagaagcttaaaagaagcagaaaatgtgtggcagatgactgggacagatggtgtgatggttgcaagaggacttttaacaaacccagctatgtttgctggatatgaagaaaccccactgaaatgtatctgggactgggttgacatctctcttgaacttggaactccttttatgtgcttccatcagcatctgatgtacatgatggaaaagataacgtcaaggcaggagaagagagtatttaatgccttgtcaagcacatcagcagtcctggactaccttacggaccattatggtgatgagtcgctttctaaatctttgtagtaggtacttcttacctacatggaaccacatgaggttacagcctcgtatttcttttaagtctatggcttttaacatcagtacaacagcaatccctggggccagacatggcggcacatgtcttttatccagctactcagaaaactaaaggaagaggtttggaaattctaggccagcaaaactttatctgaaagaataaacggaacttttccataaccaagaactcaaacctgggactgtagagatggctcaccagttaaaacctcgctgctcttctacaggacctgagctccagttccaggggattcaacaggcttttcaggcctcctcaggcaccagctaagcacaatgtgtacagacagccatgcaagcaaaacattcatacacataaaactagcaacaatggccacaaaaatccgcccggtactccgtcctcatggattcagtagattgtgagcagacccagaagttgtaaagaactccggagttttgaccatccaataatcccagatcaaatattgaaaacctctgcttctaatctttatgggtgtgcgggatgggtggggatgggagttttactaaaggtattctgtttttaagtgttttaaataaaacttttctaatagcaa

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