LOCUS       NR_177924               3350 bp    RNA     linear   ROD 08-AUG-2023
DEFINITION  Mus musculus GC-rich sequence DNA binding factor 2 (Gcfc2),
            transcript variant 3, non-coding RNA.
ACCESSION   NR_177924 XR_003956219
VERSION     NR_177924.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3350)
  AUTHORS   Ma Y, Ren Y and Guan J.
  TITLE     Knockdown of GC binding factor 2 by RNA interference inhibits
            invasion and migration of vascular smooth muscle cells
  JOURNAL   Mol Med Rep 20 (2), 1781-1789 (2019)
   PUBMED   31257544
  REMARK    GeneRIF: The inhibition of vascular smooth muscle cells
            proliferation and migration by knockdown of GCF2 by RNA
            interference was mediated by the PI3K/AKT signaling pathway.
REFERENCE   2  (bases 1 to 3350)
  AUTHORS   Maga AM, Navarro N, Cunningham ML and Cox TC.
  TITLE     Quantitative trait loci affecting the 3D skull shape and size in
            mouse and prioritization of candidate genes in-silico
  JOURNAL   Front Physiol 6, 92 (2015)
   PUBMED   25859222
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3350)
  AUTHORS   Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S,
            Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N,
            Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y,
            Okado H, Hashimoto M and Asahara H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   4  (bases 1 to 3350)
  AUTHORS   Ballif BA, Villen J, Beausoleil SA, Schwartz D and Gygi SP.
  TITLE     Phosphoproteomic analysis of the developing mouse brain
  JOURNAL   Mol Cell Proteomics 3 (11), 1093-1101 (2004)
   PUBMED   15345747
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC129024.4.
            
            On Sep 1, 2022 this sequence version replaced XR_003956219.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK038369.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164133
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-260               AC129024.4         86410-86669         c
            261-389             AC129024.4         84454-84582         c
            390-614             AC129024.4         79456-79680         c
            615-712             AC129024.4         77437-77534         c
            713-788             AC129024.4         76545-76620         c
            789-904             AC129024.4         74327-74442         c
            905-1091            AC129024.4         70782-70968         c
            1092-1215           AC129024.4         68907-69030         c
            1216-1297           AC129024.4         67338-67419         c
            1298-1410           AC129024.4         66807-66919         c
            1411-1524           AC129024.4         65828-65941         c
            1525-1675           AC129024.4         63735-63885         c
            1676-1794           AC129024.4         61967-62085         c
            1795-1871           AC129024.4         60363-60439         c
            1872-1938           AC129024.4         58562-58628         c
            1939-2085           AC129024.4         56928-57074         c
            2086-2210           AC129024.4         53393-53517         c
            2211-3350           AC129024.4         51255-52394         c
FEATURES             Location/Qualifiers
     source          1..3350
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 35.81 cM"
     gene            1..3350
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /note="GC-rich sequence DNA binding factor 2"
                     /db_xref="GeneID:330361"
                     /db_xref="MGI:MGI:2141656"
     misc_RNA        1..3350
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /product="GC-rich sequence DNA binding factor 2,
                     transcript variant 3"
                     /db_xref="GeneID:330361"
                     /db_xref="MGI:MGI:2141656"
     exon            1..260
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    29..820
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="COORDINATES:
                     alignment:Blast2seq::RefSeq|NM_177884.4"
                     /note="primary ORF has stop codon >50 nucleotides from the
                     terminal splice site; nonsense-mediated decay (NMD)
                     candidate"
     exon            261..389
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            390..614
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            615..712
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            713..788
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            789..904
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            905..1091
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1092..1215
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1216..1297
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1298..1410
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1411..1524
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1525..1675
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1676..1794
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1795..1871
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1872..1938
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1939..2085
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            2086..2210
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            2211..3350
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

aaggagacgcgccaatcctacttggaacatggctctcaggccccagaggactttcaggcggcgccaggtcgagtccagcgatagcgatagcgatagcgacggcgcgaaggagcagagtgcggaggagccggcgtctgccggcggccgaacagagggagcggagcggccgcgcggggcccgcagcgcccggggccgaggtcgggtctgggcgagttcccgccgcagcccgggagctgctccccgcggggacggcggagcagaatgcagaacagctgagctctcaacggatgaagaggaaggaacacataccttgacaggaagtaagggtgatcggagtccgtcctctgatagctcttgctctctggaagaaagagacgtttcacccatagttgagatccccgatgcagcttttattcaggcagcccgcagaaaacgggagttggccaggaccccaggggactacatttcattggatgtaaaccactcctgctccacttctgactgtaagagaagcaatgaagaggacccagagagcgatcctgatgaccacgaaaagagaatactgtttaccccaaagcctcaaacactccggcaaagaatggctgaagaaacgtcaatcaggagtgaggaatcaagtgaagagagtcaggaagatgaaaaccaagacatctgggagcagcagcagatgaggaaagcagtcaggatcccggcgcatggcacaaacagagccaccttggaagacggaatgtcagcggggaactgcattcatccagttggactctggacaaggacaaaatacagacctttcccacagcagtaagtctcaaaccctgaagaagtttgatacttccatttcatttccaccggtaaatttggaaattataaagaaacagttaaataatagattaacattactacaggagtctcatcgctcacaccagagagaatatgaaaaatatgaacaagacatcaagagttcaaagacggctatccagaatcttgagagtgcatcagaccatgctcaaaactacagattctacaggggcatgaaaagttatgtggaaaatataattgattgtctaaatgaaaagattgtcagcattgtggaactagaatcatccatgtacacgttgcttttaaaacggtcagaagcacttttgaaacgcaggcaagatgaattaaaatgcgaatcatcatatttgcagcagttatcacgcaaagatgagacatcggcaaatggaagcttggctgtggatgaaaaggatcaacggattttagaagagattgaagctcggaggatgcagagaagacaggccagggagctctcgggcagctgtgaccatcaggaagggatgtctagtgatgatgagctgtctcctgcagagatgactaacttccacaagtgccaagcagtggcgagaaaagtttcctgattcctactatgaagccttcgttggtttctgcttaccaaagcttttaagtcccctgatacgagttcagttgcttgactggaatcctcttaagatggactccataggtctagacaagatgccctggttcacagctataacagagtttatggagagcagcatggacgatatagggaaggaagatggttctgataaaaaaatcttggctgctgtcatcaacaaaacagttgttcctcgacttacagattttgtagagaccatttgggatcccctgtcaacctcacagacaagaagtttaacagtgcactgcagagtggcttttgaacagttcgcttctgaaaatgaagttagtaaaaataaacaggatttacttaaatctattgttgcaagaatgaagaagtcaatagaagatgatatttttattcctctatacccaaagagctctgaagaaggaaaaatgtcaccacactccaagttccaagaaagacagttctggggagctctaaagctcttccgaaatattcttctttggaatggccttctcccagatgacaccttgcaagatctgggactggggaagctgctgaatcgctaccttatcatctctcttactaatgccgtccctggaccagatgtggttaaaaagtgcagccagatagcagcatgtctaccagaaagatggtttgagaactctgctatgaggacatcaattccccagctagaaaacttcattaagtttttgttgcagtctgcacagaaattatcctcaagtgaattcaggaatgaagtcagtgaaataattcttatcctggtgaaggtaaaagctctgactcaagccgaatccctcagagaagagcgtcccctggagcccctcccagcccagagtacaggtgtttgagtgcgccgtgtgggagtgcccagagtcaagatgaccgtgtcacagccgatgccgcctttgctgggtgcccacttggggtgtggccaggcctcctgatgcttcgtagctgagggaagtaatgcacagcagcagccgagctcagtgtgctgctcttttactctctcaatccggaaggaaatgaagcaatctgacacacagaagcatgcctgaatcaaaaccatcttcagcaaactccaatgtttgcagatcagctaatgaggaagctctatctctggatggtttcttttatcttattctttggtggggactcggtctcattctgaagtgtaaggaattacttattaaatagctaacacatttttatacaaactgtcctttcaaaatctgtactgacttactgtgtgaaatcagtgcaagagagtgccagtgatctccagattttgattcattgtcaatttgttaaaaaaaaaaaaactttgaaaaaagatttatttttatatgtgtggtcatgtatgtacctgggtgggtttagcactacctccatgtaggggccagagggcatcaggtcccctggaactggaatccaggaggttgtgggccatctaatgtgcttggaaccaaacccaggtcctcagaagagatcttcaccctccctgtgaagaatgaagctgtggtctgagtcatctgtaagtccttaagtgaggcttttttgctatgttttgtgtaactcatggtaggactaaaaaggccattgctcttttaaatacagaaatgtaaagtatttctctaattaaggtagtctgaggcaaggtgattaagaaattatgaacttttctcaaaatgactgtattaatgttcttaagtatatttgttaagcaactcaatgatgatcctgtatttatttttccgtgttgtcactttagacatttgctcgttacaaaagcatgtgtatatgtgtgcagaaagttttgtatataaatggcagagactttatttttgctgttaaagggcacttttggaaa

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